The code extracts the environmental variable provided by the MetOffice
Paper_Campylobacter_correction.R:
The code correct the Campylobacter data, to remove the incubation period and reporting delay. Incubation period based on log-normal, which is better.
This is not the best way to remove reporting delay as it depends on time, season etc. Contacted Nouflay but no reply. So I cannot be bother to do this. Use simple Sartwell instead.
PAPER_campy_correction_plot: The code associates the value of the environmental variables to the Campylobacter cases at the location (diagnostic postcode) and date of occurrence with a chosen time-lag
PAPER_Conditional_Probability.R: To find the conditional probability
PAPER_Reconstruction_from_Conditional_probability_light_hum_max (and all other variables): To reconstruct the time-series
