diff --git a/README.md b/README.md index 0165f666507e5446711ad5d89e0dfa196c2f2df4..77f4d02aabf256f8bfdb82753b21b2c5646a5572 100644 --- a/README.md +++ b/README.md @@ -1,15 +1 @@ -Paper_data_extraction_from_MEDMI.R: - The code extracts the environmental variable provided by the MetOffice - -Paper_Campylobacter_correction.R: -The code correct the Campylobacter data, to remove the incubation period and reporting delay. Incubation period based on log-normal, which is better. -This is not the best way to remove reporting delay as it depends on time, season etc. Contacted Nouflay but no reply. So I cannot be bother to do this. Use simple Sartwell instead. - -PAPER_campy_correction_plot: The code associates the value of the environmental variables to the Campylobacter cases at the location (diagnostic postcode) and date of occurrence with a chosen time-lag - -PAPER_Conditional_Probability.R: To find the conditional probability - -PAPER_Reconstruction_from_Conditional_probability_light_hum_max (and all other variables): To reconstruct the time-series - -PAPER_Plots_Campylobacter_Conditional_probability_quantile.r. PAPER_Reconstruction_from_Conditional_probability_light_hum_max_quantile.r paper_plot_Simulated_Reconstruct_3_var_quantile.R -The sameas above with quantiles +See information in document "Content of Codes used in Campylobacter project.pdf" \ No newline at end of file