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Surrey Shared Containers / Apptainer bioinformatics R seurat5 with banksy
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README.md 565 B
This is the Apptainer version of docker://container-registry.surrey.ac.uk/shared-containers/apptainer-bioinformatics-cell2location
Use
apptainer pull ./docker_imgs/cell2location.sif oras://container-registry.surrey.ac.uk/shared-containers/apptainer-bioinformatics-cell2location:latest
# Run with NVIDIA GPU enabled
apptainer run --nv --bind /usr/lib/locale:/usr/lib/locale ./docker_imgs/cell2location.sif
# you can also check it by
apptainer exec --nv --bind /usr/lib/locale:/usr/lib/locale ../docker_imgs/cell2location.sif nvidia-smi