fix typos in new dataIO open()

binarycpython/utils/dataIO.py

@@ -119,7 +119,7 @@ class dataIO():
             object.persistent_data_memory_dict = persistent_data_memory_dict
 
             self.NFS_flush_hack(filename)
-            
+
             # touch 'saved' file
             saved = filename + '.saved'
             self.HPC_touch(saved)
@@ -227,7 +227,7 @@ class dataIO():
             size=os.path.getsize(filename),
             modtime=modtime,
         ))
-        
+
         newpop = self.load_population_object(filename)
 
         try:
@@ -365,7 +365,7 @@ class dataIO():
                 file_type=file_type,
             )
         )
-        
+
     def write_binary_c_calls_to_file(
             self,
             output_dir: Union[str, None] = None,
@@ -495,7 +495,7 @@ class dataIO():
                 f.write(string)
                 f.close()
                 self.NFS_flush_hack(path)
-                           
+
         # custom logging functions for HPC jobs
         if self.HPC_job():
             self.HPC_set_status(string)
@@ -529,7 +529,7 @@ class dataIO():
             time.sleep(0.25)
         while os.path.isfile(filename + lock_suffix):
             time.sleep(0.25)
-            
+
     def locked_open_for_write(self,
                               filename,
                               encoding="utf-8",
@@ -541,7 +541,7 @@ class dataIO():
                               vb=False,
                               **kwargs):
         """
-        Wrapper for Python's open(filename) which opens a file at 
+        Wrapper for Python's open(filename) which opens a file at
         filename for writing (mode "w") and locks it.
 
         We check whether the file's lockfile already exists, in which
@@ -560,7 +560,7 @@ class dataIO():
             fatal_open_errors: if open() fails and fatal_open_errors is True, exit.
             exists_ok: if False and the file at filename exists, return (None,None) (default False)
             vb: verbose logging if True, defaults to False
- 
+
         Returns:
             (file_object, lock_object) tuple.
             If the file was not opened, returns (None,None).
@@ -619,7 +619,7 @@ class dataIO():
                             print("File at {} already exists (2): cannot write to it, unlocking and returning (None,None)".format(filename))
                         lock.unlock()
                         return (None,None)
-                    
+
                     # All is apparently ok: file is locked
                     try:
                         if vb:
@@ -660,7 +660,7 @@ class dataIO():
         os.sync()
         dir = os.path.dirname(filename)
         os.scandir(dir)
-        
+
 
     def compression_type(self,filename):
         """
@@ -673,12 +673,12 @@ class dataIO():
         else:
             return None
 
-    def open(self,file, mode='r', buffering=- 1, encoding=None, errors=None, newline=None, closefd=True, opener=None, compression=None, compresslevel=None)
+    def open(self,file, mode='r', buffering=- 1, encoding=None, errors=None, newline=None, closefd=True, opener=None, compression=None, compresslevel=None):
         """
         Wrapper for open() with automatic compression based on the file extension.
         """
         if compression is None:
-            compression = compression_type(file)
+            compression = self.compression_type(file)
         if compression:
             if compresslevel is None:
                 compresslevel = 9
@@ -704,5 +704,5 @@ class dataIO():
                                errors=errors,
                                newline=newline,
                                closefd=closefd,
-                               opener=opener)                               
+                               opener=opener)
         return file_object