fixed functionality for fetching default args via binaryc interface. making...

fixed functionality for fetching default args via binaryc interface. making some evolution plots now

binaryc_python_utils/functions.py

@@ -7,7 +7,6 @@ def create_arg_string(arg_dict):
     """
     Function that creates the arg string
     """
-
     arg_string = '' 
     for key in arg_dict.keys():
         arg_string += "{key} {value} ".format(key=key, value=arg_dict[key])
@@ -27,17 +26,26 @@ def get_defaults():
             key, value = default.split(' = ')
 
             # Filter out NULLS (not compiled anyway)
-            if not value=='NULL':
-                default_dict[key] = value
+            if not value in ['NULL', 'Function']:
+                if not value=='':
+                    default_dict[key] = value
     return default_dict
 
+def get_arg_keys():
+    """
+    Function that return the list of possible keys to give in the arg string
+    """
+
+    return get_defaults().keys()
+
 def run_system(**kwargs):
     """
     Wrapper to run a system with settings 
     """
 
     # Load default args
-    physics_args = get_defaults()
+    args = get_defaults()
+    # args = {}
 
     # For example
     # physics_args['M_1'] = 20
@@ -46,11 +54,12 @@ def run_system(**kwargs):
 
     # Use kwarg value to override defaults and add new args
     for key in kwargs.keys():
-        physics_args[key] = kwargs[key]
+        args[key] = kwargs[key]
 
     # Construct arguments string and final execution string
-    arg_string = create_arg_string(physics_args)
+    arg_string = create_arg_string(args)
     arg_string = f'binary_c {arg_string}' 
+    # print(arg_string)
 
     # Run it and get output
     buffer = ""
@@ -58,7 +67,6 @@ def run_system(**kwargs):
 
     return output
 
-
 def parse_output(output, selected_header):
     """
     Function that parses output of binaryc when it is construction like this:
@@ -98,5 +106,4 @@ def parse_output(output, selected_header):
         for key in keys:
             final_values_dict[key].append(value_dict[key])
 
-    return final_values_dict
-
+    return final_values_dict
\ No newline at end of file

tests_david/testing_automatic_log_readout.py

@@ -9,7 +9,6 @@ import pandas as pd
 import binary_c
 
 
-from binaryc_python_utils.defaults import physics_defaults
 from binaryc_python_utils.functions import create_arg_string, parse_output, run_system
 
 """
@@ -31,13 +30,15 @@ print("The following keys are present in the results:\n{}".format(result.keys())
 
 # Cast the data into a dataframe. 
 df = pd.DataFrame.from_dict(result, dtype=np.float64)
-print(df)
 
-
-# sliced_df = df[df.t < 1000] # Cut off late parts of evolution
+sliced_df = df[df.t < 1000] # Cut off late parts of evolution
 # print(sliced_df["t"])
 
-# plt.plot(sliced_df['t'], sliced_df['radius'])
-# plt.xlabel('Time (Myr)')
-# plt.ylabel('Radius (Rsol)')
-# plt.show()
+
+
+
+
\ No newline at end of file
+plt.plot(sliced_df['omega'], sliced_df['radius'])
+plt.xlabel('Time (Myr)')
+plt.ylabel('omega (Rsol)')
+plt.show()
\ No newline at end of file