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Jupyter lab to debug python code running in a docker!
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Image to train tensorflow or pytorch models using gpu
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All dependencies to run samplernn-pytorch (libexpat) https://github.com/deepsound-project/samplernn-pytorch
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this image comes with BITFAM and RStan
Please refer to the tutorial Transcription factor regulatory activity in single cell transcriptomics on YouTube. ]
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https://www.bioconductor.org/packages/release/bioc/html/Banksy.html This container is specifically for Banksy, Spatial transcriptomic clustering.
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A container for building the YingMa0107/CARD tool in R for "Spatially Informed Cell Type Deconvolution for Spatial Transcriptomics".
use podman run -it container-registry.surrey.ac.uk/shared-containers/bioinformatics-yma-card
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a smaller and cleaner version for container-registry.surrey.ac.uk/shared-containers/bioinformatics-miniconda-r441-seurat5
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Contains dependencies for https://github.com/YuliangXiu/ECON/blob/master/docs/installation-ubuntu.md
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a smaller and cleaner version for container-registry.surrey.ac.uk/shared-containers/bioinformatics-miniconda-r441-seurat5, but it uses R 4.3.3
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Seurat5 base + SingleCellExperiment
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