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A template for creating Docker image file projects. Includes an example Dockerfile and the required gitlab-ci.yml to build the image.

customize for docker://google/cloud-sdk:latest, plus gspread pandas google-auth PyYAML notebook

Apptainer for https://gitlab.surrey.ac.uk/surrey-shared-containers/google-cloud-sdk

A template for creating Docker image file projects. Includes an example Dockerfile and the required gitlab-ci.yml to build the image.

a Singular container of https://github.com/BayraktarLab/cell2location/ to achieve the lastest cell2location

Apptainer for https://gitlab.surrey.ac.uk/surrey-shared-containers/bioinformatics-yingma-card

Apptainer for https://gitlab.surrey.ac.uk/surrey-shared-containers/bioinformatics-r-seurat-5-with-banksy

https://www.bioconductor.org/packages/release/bioc/html/Banksy.html This container is specifically for Banksy, Spatial transcriptomic clustering.

this image comes with BITFAM and RStan

Please refer to the tutorial Transcription factor regulatory activity in single cell transcriptomics on YouTube. ]

Apptainer for https://gitlab.surrey.ac.uk/surrey-shared-containers/bioinformatics-r-seurat5-with-recommended-pkgs

An apptainer container running ROS2 to support the teaching of EEE3043

Apptainer for https://gitlab.surrey.ac.uk/surrey-shared-containers/biodynamo-minimal

A Docker image attempts to install a Runner Service for Gitpod, including a cloud hypervisor for VM isolation; thus, it may not work.