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Commit a281a579 authored by Huang, Huan (PG/R - Comp Sci & Elec Eng)'s avatar Huang, Huan (PG/R - Comp Sci & Elec Eng)
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- /container.def
- /README.md
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README.md
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This is the Apptainer version of `docker://container-registry.surrey.ac.uk/shared-containers/bioinformatics-r-seurat-5-with-banksy`
This is the Apptainer version of `docker://container-registry.surrey.ac.uk/shared-containers/bioinformatics-yingma-card`
Use
```bash
apptainer pull ./docker_imgs/R_seurat5_with_banksy.sif oras://container-registry.surrey.ac.uk/shared-containers/apptainer-bioinformatics-r-seurat5-with-banksy:latest
apptainer pull ./docker_imgs/R_YMa_CARD.sif oras://container-registry.surrey.ac.uk/shared-containers/apptainer-bioinformatics-yingma-card:latest
# Run
apptainer exec --bind /usr/lib/locale:/usr/lib/locale --env R_LIBS_USER="" --env R_ENVIRON_USER="" ./docker_imgs/R_seurat5_with_banksy.sif R
apptainer exec --bind /usr/lib/locale:/usr/lib/locale --env R_LIBS_USER="" --env R_ENVIRON_USER="" ./docker_imgs/R_YMa_CARD.sif R
```
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container.def
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Bootstrap: docker
From: container-registry.surrey.ac.uk/shared-containers/bioinformatics-r-seurat-5-with-banksy:latest
From: container-registry.surrey.ac.uk/shared-containers/bioinformatics-yingma-card:latest
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