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Paper_data_extraction_from_MEDMI.R: The code extracts the environmental variable provided by the MetOffice

Paper_Campylobacter_correction.R: The code correct the Campylobacter data, to remove the incubation period and reporting delay. Incubation period based on log-normal, which is better. This is not the best way to remove reporting delay as it depends on time, season etc. Contacted Nouflay but no reply. So I cannot be bother to do this. Use simple Sartwell instead.

PAPER_campy_correction_plot: The code associates the value of the environmental variables to the Campylobacter cases at the location (diagnostic postcode) and date of occurrence with a chosen time-lag

PAPER_Conditional_Probability.R: To find the conditional probability

PAPER_Reconstruction_from_Conditional_probability_light_hum_max (and all other variables): To reconstruct the time-series

PAPER_Plots_Campylobacter_Conditional_probability_quantile.r. PAPER_Reconstruction_from_Conditional_probability_light_hum_max_quantile.r paper_plot_Simulated_Reconstruct_3_var_quantile.R The sameas above with quantiles