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current"><a class="reference internal" href="modules.html">Binarycpython code</a><ul class="current"> <li class="toctree-l2 current"><a class="current reference internal" href="#">custom_logging_functions module</a></li> <li class="toctree-l2"><a class="reference internal" href="distribution_functions.html">distribution_functions module</a></li> <li class="toctree-l2"><a class="reference internal" href="functions.html">functions module</a></li> <li class="toctree-l2"><a class="reference internal" href="grid.html">grid_class module</a></li> <li class="toctree-l2"><a class="reference internal" href="grid_options_defaults.html">Grid options and descriptions</a></li> <li class="toctree-l2"><a class="reference internal" href="hpc_functions.html">hpc_functions module</a></li> <li class="toctree-l2"><a class="reference internal" href="plot_functions.html">plot_functions module</a></li> <li class="toctree-l2"><a class="reference internal" href="run_system_wrapper.html">run_system_wrapper module</a></li> <li class="toctree-l2"><a class="reference internal" href="spacing_functions.html">spacing_functions module</a></li> <li class="toctree-l2"><a class="reference internal" href="stellar_types.html">stellar_types module</a></li> <li class="toctree-l2"><a class="reference internal" href="useful_funcs.html">useful_funcs module</a></li> </ul> </li> <li class="toctree-l1"><a class="reference internal" href="examples.html">Examples</a></li> <li class="toctree-l1"><a class="reference internal" href="binary_c_parameters.html">Binary_c parameters</a></li> <li class="toctree-l1"><a class="reference internal" href="grid_options_descriptions.html">Population grid code options</a></li> <li class="toctree-l1"><a class="reference external" href="https://gitlab.eps.surrey.ac.uk/ri0005/binary_c-python">Visit the GitLab repo</a></li> <li class="toctree-l1"><a class="reference external" href="https://gitlab.eps.surrey.ac.uk/ri0005/binary_c-python/-/issues/new">Submit an issue</a></li> </ul> </div> </div> </nav> <section data-toggle="wy-nav-shift" class="wy-nav-content-wrap"> <nav class="wy-nav-top" aria-label="top navigation"> <i data-toggle="wy-nav-top" class="fa fa-bars"></i> <a href="index.html">binary_c-python</a> </nav> <div class="wy-nav-content"> <div class="rst-content"> <div role="navigation" aria-label="breadcrumbs navigation"> <ul class="wy-breadcrumbs"> <li><a href="index.html" class="icon icon-home"></a> »</li> <li><a href="modules.html">Binarycpython code</a> »</li> <li>custom_logging_functions module</li> <li class="wy-breadcrumbs-aside"> <a href="_sources/custom_logging_functions.rst.txt" rel="nofollow"> View page source</a> </li> </ul> <hr/> </div> <div role="main" class="document" itemscope="itemscope" itemtype="http://schema.org/Article"> <div itemprop="articleBody"> <div class="section" id="module-binarycpython.utils.custom_logging_functions"> <span id="custom-logging-functions-module"></span><h1>custom_logging_functions module<a class="headerlink" href="#module-binarycpython.utils.custom_logging_functions" title="Permalink to this headline">¶</a></h1> <p>Module containing functions for the custom logging functionality. The functions here make it possible for the user to define binaryc output logs on runtime</p> <dl class="py function"> <dt id="binarycpython.utils.custom_logging_functions.autogen_C_logging_code"> <code class="sig-prename descclassname">binarycpython.utils.custom_logging_functions.</code><code class="sig-name descname">autogen_C_logging_code</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">logging_dict</span></em>, <em class="sig-param"><span class="n">verbose</span><span class="o">=</span><span class="default_value">0</span></em><span class="sig-paren">)</span><a class="reference internal" href="_modules/binarycpython/utils/custom_logging_functions.html#autogen_C_logging_code"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#binarycpython.utils.custom_logging_functions.autogen_C_logging_code" title="Permalink to this definition">¶</a></dt> <dd><p>Function that autogenerates PRINTF statements for binaryc. Input is a dictionary where the key is the header of that logging line and items which are lists of parameters that will be put in that logging line</p> <p>The list elements are all appended to ‘stardata->’ in the autogenerated code.</p> <p class="rubric">Example</p> <p>Input dictionary should look like this:</p> <div class="highlight-default notranslate"><div class="highlight"><pre><span></span><span class="p">{</span><span class="s1">'MY_STELLAR_DATA'</span><span class="p">:</span> <span class="p">[</span> <span class="s1">'model.time'</span><span class="p">,</span> <span class="s1">'star[0].mass'</span><span class="p">,</span> <span class="s1">'model.probability'</span><span class="p">,</span> <span class="s1">'model.dt'</span> <span class="p">]</span> <span class="p">}</span> </pre></div> </div> <dl class="field-list simple"> <dt class="field-odd">Parameters</dt> <dd class="field-odd"><ul class="simple"> <li><p><strong>logging_dict</strong> (<code class="xref py py-class docutils literal notranslate"><span class="pre">dict</span></code>) – Dictionary containing lists of parameters that binary_c has to output. The keys are used by binary_c as start of the sentence.</p></li> <li><p><strong>verbose</strong> (<code class="xref py py-class docutils literal notranslate"><span class="pre">int</span></code>) – Level of verbosity. Defaults to zero if not set explicilty.</p></li> </ul> </dd> <dt class="field-even">Return type</dt> <dd class="field-even"><p><code class="xref py py-data docutils literal notranslate"><span class="pre">Optional</span></code>[<code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code>]</p> </dd> <dt class="field-odd">Returns</dt> <dd class="field-odd"><p>string containing C printf statement built to output the parameters given as input.</p> </dd> </dl> </dd></dl> <dl class="py function"> <dt id="binarycpython.utils.custom_logging_functions.binary_c_log_code"> <code class="sig-prename descclassname">binarycpython.utils.custom_logging_functions.</code><code class="sig-name descname">binary_c_log_code</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">code</span></em>, <em class="sig-param"><span class="n">verbose</span><span class="o">=</span><span class="default_value">0</span></em><span class="sig-paren">)</span><a class="reference internal" href="_modules/binarycpython/utils/custom_logging_functions.html#binary_c_log_code"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#binarycpython.utils.custom_logging_functions.binary_c_log_code" title="Permalink to this definition">¶</a></dt> <dd><p>Function to construct the code to construct the custom logging function</p> <p class="rubric">Example</p> <p>Code to log and terminate evolution when the primary star becomes a NS:</p> <div class="highlight-default notranslate"><div class="highlight"><pre><span></span><span class="k">if</span><span class="p">(</span><span class="n">stardata</span><span class="o">-></span><span class="n">star</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">stellar_type</span><span class="o">>=</span><span class="n">NS</span><span class="p">)</span> <span class="p">{</span> <span class="k">if</span> <span class="p">(</span><span class="n">stardata</span><span class="o">-></span><span class="n">model</span><span class="o">.</span><span class="n">time</span> <span class="o"><</span> <span class="n">stardata</span><span class="o">-></span><span class="n">model</span><span class="o">.</span><span class="n">max_evolution_time</span><span class="p">)</span> <span class="p">{</span> <span class="n">Printf</span><span class="p">(</span><span class="s2">"EXAMPLE_LOG_CO </span><span class="si">%30.12e</span><span class="s2"> </span><span class="si">%g</span><span class="s2"> </span><span class="si">%g</span><span class="s2"> </span><span class="si">%g</span><span class="s2"> </span><span class="si">%g</span><span class="s2"> </span><span class="si">%d</span><span class="s2"> </span><span class="si">%d</span><span class="se">\n</span><span class="s2">"</span><span class="p">,</span> <span class="o">//</span> <span class="n">stardata</span><span class="o">-></span><span class="n">model</span><span class="o">.</span><span class="n">time</span><span class="p">,</span> <span class="o">//</span> <span class="mi">1</span> <span class="n">stardata</span><span class="o">-></span><span class="n">star</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">mass</span><span class="p">,</span> <span class="o">//</span><span class="mi">2</span> <span class="n">stardata</span><span class="o">-></span><span class="n">previous_stardata</span><span class="o">-></span><span class="n">star</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">mass</span><span class="p">,</span> <span class="o">//</span><span class="mi">3</span> <span class="n">stardata</span><span class="o">-></span><span class="n">star</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">radius</span><span class="p">,</span> <span class="o">//</span><span class="mi">4</span> <span class="n">stardata</span><span class="o">-></span><span class="n">previous_stardata</span><span class="o">-></span><span class="n">star</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">radius</span><span class="p">,</span> <span class="o">//</span><span class="mi">5</span> <span class="n">stardata</span><span class="o">-></span><span class="n">star</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">stellar_type</span><span class="p">,</span> <span class="o">//</span><span class="mi">6</span> <span class="n">stardata</span><span class="o">-></span><span class="n">previous_stardata</span><span class="o">-></span><span class="n">star</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">stellar_type</span> <span class="o">//</span><span class="mi">7</span> <span class="p">);</span> <span class="p">};</span> <span class="o">/*</span> <span class="n">Kill</span> <span class="n">the</span> <span class="n">simulation</span> <span class="n">to</span> <span class="n">save</span> <span class="n">time</span> <span class="o">*/</span> <span class="n">stardata</span><span class="o">-></span><span class="n">model</span><span class="o">.</span><span class="n">max_evolution_time</span> <span class="o">=</span> <span class="n">stardata</span><span class="o">-></span><span class="n">model</span><span class="o">.</span><span class="n">time</span> <span class="o">-</span> <span class="n">stardata</span><span class="o">-></span><span class="n">model</span><span class="o">.</span><span class="n">dtm</span><span class="p">;</span> <span class="p">};</span> </pre></div> </div> <dl class="field-list simple"> <dt class="field-odd">Parameters</dt> <dd class="field-odd"><ul class="simple"> <li><p><strong>code</strong> (<code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code>) – Exact c-statement to output information in binary_c. Can be wrapped in logical statements.</p></li> <li><p><strong>verbose</strong> (<code class="xref py py-class docutils literal notranslate"><span class="pre">int</span></code>) – Level of verbosity. Defaults to zero if not set explicilty.</p></li> </ul> </dd> <dt class="field-even">Return type</dt> <dd class="field-even"><p><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></p> </dd> <dt class="field-odd">Returns</dt> <dd class="field-odd"><p>string containing the custom logging code. This includes all the includes and other definitions. This code will be used as the shared library</p> </dd> </dl> </dd></dl> <dl class="py function"> <dt id="binarycpython.utils.custom_logging_functions.binary_c_write_log_code"> <code class="sig-prename descclassname">binarycpython.utils.custom_logging_functions.</code><code class="sig-name descname">binary_c_write_log_code</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">code</span></em>, <em class="sig-param"><span class="n">filename</span></em>, <em class="sig-param"><span class="n">verbose</span><span class="o">=</span><span class="default_value">0</span></em><span class="sig-paren">)</span><a class="reference internal" href="_modules/binarycpython/utils/custom_logging_functions.html#binary_c_write_log_code"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#binarycpython.utils.custom_logging_functions.binary_c_write_log_code" title="Permalink to this definition">¶</a></dt> <dd><p>Function to write the generated logging code to a file</p> <dl class="field-list simple"> <dt class="field-odd">Parameters</dt> <dd class="field-odd"><ul class="simple"> <li><p><strong>code</strong> (<code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code>) – string containing the custom logging code to write to a file.</p></li> <li><p><strong>filename</strong> (<code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code>) – target filename.</p></li> <li><p><strong>verbose</strong> (<code class="xref py py-class docutils literal notranslate"><span class="pre">int</span></code>) – Level of verbosity. Defaults to zero if not set explicilty.</p></li> </ul> </dd> <dt class="field-even">Return type</dt> <dd class="field-even"><p><code class="xref py py-obj docutils literal notranslate"><span class="pre">None</span></code></p> </dd> </dl> </dd></dl> <dl class="py function"> <dt id="binarycpython.utils.custom_logging_functions.compile_shared_lib"> <code class="sig-prename descclassname">binarycpython.utils.custom_logging_functions.</code><code class="sig-name descname">compile_shared_lib</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">code</span></em>, <em class="sig-param"><span class="n">sourcefile_name</span></em>, <em class="sig-param"><span class="n">outfile_name</span></em>, <em class="sig-param"><span class="n">verbose</span><span class="o">=</span><span class="default_value">0</span></em><span class="sig-paren">)</span><a class="reference internal" href="_modules/binarycpython/utils/custom_logging_functions.html#compile_shared_lib"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#binarycpython.utils.custom_logging_functions.compile_shared_lib" title="Permalink to this definition">¶</a></dt> <dd><p>Function to write the custom logging code to a file and then compile it.</p> <p>TODO: nicely put in the -fPIC TODO: consider returning a status</p> <dl class="field-list simple"> <dt class="field-odd">Parameters</dt> <dd class="field-odd"><ul class="simple"> <li><p><strong>code</strong> (<code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code>) – string containing the custom logging code</p></li> <li><p><strong>sourcefile_name</strong> (<code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code>) – name of the file that will contain the code</p></li> <li><p><strong>outfile_name</strong> (<code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code>) – name of the file that will be the shared library</p></li> <li><p><strong>verbose</strong> (<code class="xref py py-class docutils literal notranslate"><span class="pre">int</span></code>) – Level of verbosity. Defaults to zero if not set explicilty.</p></li> </ul> </dd> <dt class="field-even">Return type</dt> <dd class="field-even"><p><code class="xref py py-obj docutils literal notranslate"><span class="pre">None</span></code></p> </dd> </dl> </dd></dl> <dl class="py function"> <dt id="binarycpython.utils.custom_logging_functions.create_and_load_logging_function"> <code class="sig-prename descclassname">binarycpython.utils.custom_logging_functions.</code><code class="sig-name descname">create_and_load_logging_function</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">custom_logging_code</span></em>, <em class="sig-param"><span class="n">verbose</span><span class="o">=</span><span class="default_value">0</span></em>, <em class="sig-param"><span class="n">custom_tmp_dir</span><span class="o">=</span><span class="default_value">None</span></em><span class="sig-paren">)</span><a class="reference internal" href="_modules/binarycpython/utils/custom_logging_functions.html#create_and_load_logging_function"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#binarycpython.utils.custom_logging_functions.create_and_load_logging_function" title="Permalink to this definition">¶</a></dt> <dd><p>Function to automatically compile the shared library with the given custom logging code and load it with ctypes.</p> <p>This function is more or less the main function of this module and unless you know what you’re doing with the other functions I recommend using this in function in combination with a function that generates the exact code (like <code class="xref py py-meth docutils literal notranslate"><span class="pre">binary_c_log_code()</span></code>)</p> <dl class="field-list simple"> <dt class="field-odd">Parameters</dt> <dd class="field-odd"><ul class="simple"> <li><p><strong>custom_logging_code</strong> (<code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code>) – string containing the custom logging code</p></li> <li><p><strong>verbose</strong> (<code class="xref py py-class docutils literal notranslate"><span class="pre">int</span></code>) – Level of verbosity. Defaults to zero if not set explicilty.</p></li> </ul> </dd> <dt class="field-even">Return type</dt> <dd class="field-even"><p><code class="xref py py-data docutils literal notranslate"><span class="pre">Tuple</span></code>[<code class="xref py py-class docutils literal notranslate"><span class="pre">int</span></code>, <code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code>]</p> </dd> <dt class="field-odd">Returns</dt> <dd class="field-odd"><p>memory adress of the custom logging function in a int type.</p> </dd> </dl> </dd></dl> <dl class="py function"> <dt id="binarycpython.utils.custom_logging_functions.from_binary_c_config"> <code class="sig-prename descclassname">binarycpython.utils.custom_logging_functions.</code><code class="sig-name descname">from_binary_c_config</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">config_file</span></em>, <em class="sig-param"><span class="n">flag</span></em><span class="sig-paren">)</span><a class="reference internal" href="_modules/binarycpython/utils/custom_logging_functions.html#from_binary_c_config"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#binarycpython.utils.custom_logging_functions.from_binary_c_config" title="Permalink to this definition">¶</a></dt> <dd><p>Function to run the binaryc_config command with flags</p> <dl class="field-list simple"> <dt class="field-odd">Parameters</dt> <dd class="field-odd"><ul class="simple"> <li><p><strong>config_file</strong> (<code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code>) – binary_c-config filepath TODO: change the name of this</p></li> <li><p><strong>flag</strong> (<code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code>) – flag used in the binary_c-config call.</p></li> </ul> </dd> <dt class="field-even">Return type</dt> <dd class="field-even"><p><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></p> </dd> <dt class="field-odd">Returns</dt> <dd class="field-odd"><p>returns the result of <binary_c-config> <flag></p> </dd> </dl> </dd></dl> <dl class="py function"> <dt id="binarycpython.utils.custom_logging_functions.return_compilation_dict"> <code class="sig-prename descclassname">binarycpython.utils.custom_logging_functions.</code><code class="sig-name descname">return_compilation_dict</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">verbose</span><span class="o">=</span><span class="default_value">0</span></em><span class="sig-paren">)</span><a class="reference internal" href="_modules/binarycpython/utils/custom_logging_functions.html#return_compilation_dict"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#binarycpython.utils.custom_logging_functions.return_compilation_dict" title="Permalink to this definition">¶</a></dt> <dd><p>Function to build the compile command for the shared library</p> <p>Inspired by binary_c_inline_config command in perl</p> <p>TODO: this function still has some cleaning up to do wrt default values for the compile command # <a class="reference external" href="https://developers.redhat.com/blog/2018/03/21/compiler-and-linker-flags-gcc/">https://developers.redhat.com/blog/2018/03/21/compiler-and-linker-flags-gcc/</a></p> <dl class="field-list simple"> <dt class="field-odd">Parameters</dt> <dd class="field-odd"><p><strong>verbose</strong> (<code class="xref py py-class docutils literal notranslate"><span class="pre">int</span></code>) – Level of verbosity. Defaults to zero if not set explicilty.</p> </dd> <dt class="field-even">Return type</dt> <dd class="field-even"><p><code class="xref py py-class docutils literal notranslate"><span class="pre">dict</span></code></p> </dd> <dt class="field-odd">Returns</dt> <dd class="field-odd"><p>string containing the command to build the shared library</p> </dd> </dl> </dd></dl> </div> </div> </div> <footer> <div class="rst-footer-buttons" role="navigation" aria-label="footer navigation"> <a href="distribution_functions.html" class="btn btn-neutral float-right" title="distribution_functions module" accesskey="n" rel="next">Next <span class="fa fa-arrow-circle-right"></span></a> <a href="modules.html" class="btn btn-neutral float-left" title="Binarycpython code" accesskey="p" rel="prev"><span class="fa fa-arrow-circle-left"></span> Previous</a> </div> <hr/> <div role="contentinfo"> <p> © Copyright 2021, David Hendriks, Robert Izzard </p> </div> Built with <a href="http://sphinx-doc.org/">Sphinx</a> using a <a href="https://github.com/rtfd/sphinx_rtd_theme">theme</a> provided by <a href="https://readthedocs.org">Read the Docs</a>. <br><br> Generated on binarycpython git branch: development_version/2.1.7 git revision 1b4c6f9cc7be3ad0a2d3770500d30d610bf35d8f url: <a href="https://gitlab.eps.surrey.ac.uk/ri0005/binary_c-python/-/tree/development_version/2.1.7">git url</a>. <br><br> Using binary_c with bit branch branch_david: git revision: "6044:20210720:d1ed5b6c1" url: <a href="https://gitlab.eps.surrey.ac.uk/ri0005/binary_c/-/tree/branch_david">git url</a>. </footer> </div> </div> </section> </div> <script type="text/javascript"> jQuery(function () { SphinxRtdTheme.Navigation.enable(true); }); </script> </body> </html>