diff --git a/docs/build/doctrees/binary_c_parameters.doctree b/docs/build/doctrees/binary_c_parameters.doctree
index c459014308936f8bff24b47e72c5c4d983c4405d..f6338cfabfc2f18737da714694c03fafe5132542 100644
Binary files a/docs/build/doctrees/binary_c_parameters.doctree and b/docs/build/doctrees/binary_c_parameters.doctree differ
diff --git a/docs/build/doctrees/environment.pickle b/docs/build/doctrees/environment.pickle
index 8aa716a6daf4ce81ff15762358ef66b377771a6d..e0ed39a409e8733fee869823a5a3c54d0b789365 100644
Binary files a/docs/build/doctrees/environment.pickle and b/docs/build/doctrees/environment.pickle differ
diff --git a/docs/build/doctrees/functions.doctree b/docs/build/doctrees/functions.doctree
index 4fa1fa8595d451316bf9fb81bb73e75e959634b9..404ea6de34f4477f068902d88dfe218f3316327e 100644
Binary files a/docs/build/doctrees/functions.doctree and b/docs/build/doctrees/functions.doctree differ
diff --git a/docs/build/doctrees/grid.doctree b/docs/build/doctrees/grid.doctree
index 6954097710a726daade6683f7c30f32b46b5f6eb..36082ca3d96c82d3c7cd14d66b743fc2703a1cc2 100644
Binary files a/docs/build/doctrees/grid.doctree and b/docs/build/doctrees/grid.doctree differ
diff --git a/docs/build/doctrees/index.doctree b/docs/build/doctrees/index.doctree
index c0b1adc8cd9411e63986831be12d8da490a424fc..d7befe589c22002c2d96c3f547c3035fdae1fab4 100644
Binary files a/docs/build/doctrees/index.doctree and b/docs/build/doctrees/index.doctree differ
diff --git a/docs/build/doctrees/nbsphinx/notebook_individual_systems.ipynb b/docs/build/doctrees/nbsphinx/notebook_individual_systems.ipynb
index 19c2d29fbd316324eb39a361e897be2b835955e8..21d49016f3b2826d6f9d5ec87a1f6d8bb18df7af 100644
--- a/docs/build/doctrees/nbsphinx/notebook_individual_systems.ipynb
+++ b/docs/build/doctrees/nbsphinx/notebook_individual_systems.ipynb
@@ -28,6 +28,18 @@
{
"cell_type": "code",
"execution_count": 1,
+ "id": "e32dcdee",
+ "metadata": {},
+ "outputs": [],
+ "source": [
+ "import os\n",
+ "from binarycpython.utils.functions import temp_dir\n",
+ "TMP_DIR = temp_dir(\"notebooks\", \"notebook_individual_systems\")"
+ ]
+ },
+ {
+ "cell_type": "code",
+ "execution_count": 2,
"id": "425efed3-d8e3-432d-829e-41d8ebe05162",
"metadata": {},
"outputs": [],
@@ -38,7 +50,7 @@
},
{
"cell_type": "code",
- "execution_count": 2,
+ "execution_count": 3,
"id": "b2abab48-433d-4936-8434-14804c52c9f6",
"metadata": {},
"outputs": [
@@ -46,7 +58,7 @@
"name": "stdout",
"output_type": "stream",
"text": [
- "SINGLE_STAR_LIFETIME 1 12462\n",
+ "SINGLE_STAR_LIFETIME 1 12461.9\n",
"\n"
]
}
@@ -66,7 +78,7 @@
},
{
"cell_type": "code",
- "execution_count": 3,
+ "execution_count": 4,
"id": "029fc3f2-f09a-49af-a32b-248505738f2e",
"metadata": {},
"outputs": [
@@ -74,24 +86,25 @@
"name": "stdout",
"output_type": "stream",
"text": [
- " TIME M1 M2 K1 K2 SEP ECC R1/ROL1 R2/ROL2 TYPE RANDOM_SEED=67365 RANDOM_COUNT=0\n",
- " 0.0000 1.000 0.000 1 15 -1 -1.00 0.000 0.000 \"INITIAL \"\n",
- " 11003.1302 1.000 0.000 2 15 -1 -1.00 0.000 0.000 \"OFF_MS\"\n",
- " 11003.1302 1.000 0.000 2 15 -1 -1.00 0.000 0.000 \"TYPE_CHNGE\"\n",
- " 11582.2424 1.000 0.000 3 15 -1 -1.00 0.000 0.000 \"TYPE_CHNGE\"\n",
- " 12325.1085 0.817 0.000 4 15 -1 -1.00 0.000 0.000 \"TYPE_CHNGE\"\n",
- " 12457.1300 0.783 0.000 5 15 -1 -1.00 0.000 0.000 \"TYPE_CHNGE\"\n",
- " 12460.8955 0.774 0.000 6 15 -1 -1.00 0.000 0.000 \"TYPE_CHNGE\"\n",
- " 12460.8955 0.774 0.000 6 15 -1 -1.00 0.000 0.000 \"shrinkAGB\"\n",
- " 12461.9514 0.523 0.000 11 15 -1 -1.00 0.000 0.000 \"TYPE_CHNGE\"\n",
- " 15000.0000 0.523 0.000 11 15 -1 -1.00 0.000 0.000 \"MAX_TIME\"\n",
+ " TIME M1 M2 K1 K2 SEP PER ECC R1/ROL1 R2/ROL2 TYPE RANDOM_SEED=17089 RANDOM_COUNT=0\n",
+ " 0.0000 1.000 0.000 1 15 -1 -1 -1.00 0.000 0.000 \"INITIAL \"\n",
+ " 11003.1302 1.000 0.000 2 15 -1 -1 -1.00 0.000 0.000 \"OFF_MS\"\n",
+ " 11003.1302 1.000 0.000 2 15 -1 -1 -1.00 0.000 0.000 \"TYPE_CHNGE\"\n",
+ " 11582.2424 1.000 0.000 3 15 -1 -1 -1.00 0.000 0.000 \"TYPE_CHNGE\"\n",
+ " 12325.1085 0.817 0.000 4 15 -1 -1 -1.00 0.000 0.000 \"TYPE_CHNGE\"\n",
+ " 12457.1301 0.783 0.000 5 15 -1 -1 -1.00 0.000 0.000 \"TYPE_CHNGE\"\n",
+ " 12460.9983 0.716 0.000 6 15 -1 -1 -1.00 0.000 0.000 \"TYPE_CHNGE\"\n",
+ " 12460.9983 0.716 0.000 6 15 -1 -1 -1.00 0.000 0.000 \"shrinkAGB\"\n",
+ " 12461.9458 0.518 0.000 11 15 -1 -1 -1.00 0.000 0.000 \"TYPE_CHNGE\"\n",
+ " 15000.0000 0.518 0.000 11 15 -1 -1 -1.00 0.000 0.000 \"MAX_TIME\"\n",
"\n"
]
}
],
"source": [
- "output = run_system(M_1=1, log_filename='/tmp/test_logfile.txt')\n",
- "with open('/tmp/test_logfile.txt', 'r') as f:\n",
+ "log_filename = os.path.join(TMP_DIR, 'test_logfile.txt')\n",
+ "output = run_system(M_1=1, log_filename=log_filename, api_log_filename_prefix=TMP_DIR)\n",
+ "with open(log_filename, 'r') as f:\n",
" print(f.read())"
]
},
@@ -105,7 +118,7 @@
},
{
"cell_type": "code",
- "execution_count": 6,
+ "execution_count": 5,
"id": "e6a23b55-ca42-440d-83ac-e76a24a83a67",
"metadata": {
"tags": []
@@ -115,7 +128,10 @@
"name": "stdout",
"output_type": "stream",
"text": [
- "['EXAMPLE_MASSLOSS 0.000000000000e+00 1 1 1', 'EXAMPLE_MASSLOSS 0.000000000000e+00 1 1 1', 'EXAMPLE_MASSLOSS 1.000000000000e-06 1 1 1', 'EXAMPLE_MASSLOSS 2.000000000000e-06 1 1 1']\n"
+ "EXAMPLE_MASSLOSS 0.000000000000e+00 1 1 1\n",
+ "EXAMPLE_MASSLOSS 0.000000000000e+00 1 1 1\n",
+ "EXAMPLE_MASSLOSS 1.000000000000e-06 1 1 1\n",
+ "EXAMPLE_MASSLOSS 2.000000000000e-06 1 1 1\n"
]
}
],
@@ -137,8 +153,8 @@
"# Generate entire shared lib code around logging lines\n",
"custom_logging_code = binary_c_log_code(custom_logging_print_statement)\n",
"\n",
- "output = run_system(M_1=1, custom_logging_code=custom_logging_code)\n",
- "print(output.splitlines()[:4])"
+ "output = run_system(M_1=1, custom_logging_code=custom_logging_code, api_log_filename_prefix=TMP_DIR)\n",
+ "print('\\n'.join(output.splitlines()[:4]))"
]
},
{
@@ -151,7 +167,7 @@
},
{
"cell_type": "code",
- "execution_count": 7,
+ "execution_count": 6,
"id": "3822721f-217a-495b-962e-d57137b9e290",
"metadata": {},
"outputs": [
@@ -201,7 +217,7 @@
},
{
"cell_type": "code",
- "execution_count": 8,
+ "execution_count": 7,
"id": "654a07ed-2a88-46ff-9da0-b7759580f9f3",
"metadata": {},
"outputs": [
@@ -216,13 +232,13 @@
"4 2e-06 1 1 1\n",
"5 3e-06 1 1 1\n",
"... ... ... ... ...\n",
- "1612 12461.8 0.577754 1 6\n",
- "1613 12462 0.522806 1 11\n",
- "1614 13462 0.522806 1 11\n",
- "1615 14462 0.522806 1 11\n",
- "1616 15000 0.522806 1 11\n",
+ "1617 12461.8 0.546683 1 6\n",
+ "1618 12461.9 0.517749 1 11\n",
+ "1619 13461.9 0.517749 1 11\n",
+ "1620 14461.9 0.517749 1 11\n",
+ "1621 15000 0.517749 1 11\n",
"\n",
- "[1616 rows x 4 columns]\n"
+ "[1621 rows x 4 columns]\n"
]
}
],
@@ -252,7 +268,7 @@
},
{
"cell_type": "code",
- "execution_count": 9,
+ "execution_count": 8,
"id": "4a98ffca-1b72-4bb8-8df1-3bf3187d882f",
"metadata": {},
"outputs": [],
@@ -271,7 +287,7 @@
},
{
"cell_type": "code",
- "execution_count": 10,
+ "execution_count": 9,
"id": "bff1cc2e-6b32-4ba0-879f-879ffbabd223",
"metadata": {},
"outputs": [
@@ -279,11 +295,12 @@
"name": "stdout",
"output_type": "stream",
"text": [
+ "adding: api_log_filename_prefix=/tmp/binary_c_python/notebooks/notebook_individual_systems to BSE_options\n",
"adding: M_1=10 to BSE_options\n",
"Creating and loading custom logging functionality\n",
- "Running binary_c M_1 10\n",
+ "Running binary_c M_1 10 api_log_filename_prefix /tmp/binary_c_python/notebooks/notebook_individual_systems\n",
"Cleaning up the custom logging stuff. type: single\n",
- "SINGLE_STAR_LIFETIME 10 27.7358\n",
+ "SINGLE_STAR_LIFETIME 10 28.4838\n",
"\n"
]
}
@@ -294,7 +311,8 @@
"\n",
"# Set some parameters\n",
"example_pop.set(\n",
- " verbosity=1\n",
+ " verbosity=1,\n",
+ " api_log_filename_prefix=TMP_DIR\n",
")\n",
"example_pop.set(\n",
" M_1=10\n",
@@ -315,7 +333,7 @@
},
{
"cell_type": "code",
- "execution_count": 13,
+ "execution_count": 10,
"id": "dd748bab-b57e-4129-8350-9ea11fa179d0",
"metadata": {
"scrolled": true,
@@ -338,10 +356,13 @@
");\n",
" to grid_options\n",
"Creating and loading custom logging functionality\n",
- "Running binary_c M_1 10\n",
+ "Running binary_c M_1 10 api_log_filename_prefix /tmp/binary_c_python/notebooks/notebook_individual_systems\n",
"Cleaning up the custom logging stuff. type: single\n",
- "Removed /tmp/binary_c_python/custom_logging/libcustom_logging_eac2dfc438a14e5a9f5be98b1b6b4294.so\n",
- "['EXAMPLE_MASSLOSS 0.000000000000e+00 10 0 10 1', 'EXAMPLE_MASSLOSS 0.000000000000e+00 10 10 10 1', 'EXAMPLE_MASSLOSS 1.000000000000e-06 10 10 10 1', 'EXAMPLE_MASSLOSS 2.000000000000e-06 10 10 10 1']\n"
+ "Removed /tmp/binary_c_python/custom_logging/libcustom_logging_8967553693ac4e11a49c42d4eef773e8.so\n",
+ "EXAMPLE_MASSLOSS 0.000000000000e+00 10 0 10 1\n",
+ "EXAMPLE_MASSLOSS 0.000000000000e+00 10 10 10 1\n",
+ "EXAMPLE_MASSLOSS 1.000000000000e-06 10 10 10 1\n",
+ "EXAMPLE_MASSLOSS 2.000000000000e-06 10 10 10 1\n"
]
}
],
@@ -362,7 +383,7 @@
"\n",
"# get output and print\n",
"output = example_pop.evolve_single()\n",
- "print(output.splitlines()[:4])"
+ "print('\\n'.join(output.splitlines()[:4]))"
]
},
{
@@ -377,7 +398,7 @@
},
{
"cell_type": "code",
- "execution_count": 14,
+ "execution_count": 11,
"id": "fec39154-cce6-438c-8c2c-509d76b00f34",
"metadata": {},
"outputs": [],
@@ -428,7 +449,7 @@
},
{
"cell_type": "code",
- "execution_count": 15,
+ "execution_count": 12,
"id": "57347512-fd4a-434b-b13c-5e6dbd3ac415",
"metadata": {
"scrolled": true,
@@ -439,12 +460,13 @@
"name": "stdout",
"output_type": "stream",
"text": [
- "adding: parse_function=<function object_parse_function at 0x7f9265091598> to grid_options\n",
- "<<<< Warning: Key does not match previously known parameter: adding: output_dir=/tmp/ to custom_options >>>>\n",
+ "adding: parse_function=<function object_parse_function at 0x7fb4d41ebbf8> to grid_options\n",
+ "<<<< Warning: Key does not match previously known parameter: adding: output_dir=/tmp/binary_c_python/notebooks/notebook_individual_systems to custom_options >>>>\n",
+ "adding: api_log_filename_prefix=/tmp/binary_c_python/notebooks/notebook_individual_systems to BSE_options\n",
"Creating and loading custom logging functionality\n",
- "Running binary_c M_1 10\n",
+ "Running binary_c M_1 10 api_log_filename_prefix /tmp/binary_c_python/notebooks/notebook_individual_systems\n",
"Cleaning up the custom logging stuff. type: single\n",
- "Removed /tmp/binary_c_python/custom_logging/libcustom_logging_e9c2bec7f15541eb847fc6013e48e7ed.so\n",
+ "Removed /tmp/binary_c_python/custom_logging/libcustom_logging_5d7779e8190e4b79b10c7e6a44cb0e7e.so\n",
"[['time', 'mass', 'initial_mass', 'stellar_type'], [0.0, 10.0, 0.0, 10.0, 1.0], [0.0, 10.0, 10.0, 10.0, 1.0], [1e-06, 10.0, 10.0, 10.0, 1.0]]\n",
"dict_keys(['time', 'mass', 'initial_mass', 'stellar_type'])\n"
]
@@ -453,7 +475,8 @@
"source": [
"example_pop.set(\n",
" parse_function=object_parse_function,\n",
- " output_dir='/tmp/'\n",
+ " output_dir=TMP_DIR,\n",
+ " api_log_filename_prefix=TMP_DIR\n",
")\n",
"output = example_pop.evolve_single()\n",
"print(output[:4])\n",
@@ -488,7 +511,7 @@
},
{
"cell_type": "code",
- "execution_count": 16,
+ "execution_count": 13,
"id": "ec48125c-6bf5-48f4-9357-8261800b5d8b",
"metadata": {},
"outputs": [
@@ -496,7 +519,7 @@
"name": "stdout",
"output_type": "stream",
"text": [
- "SINGLE_STAR_LIFETIME 15 14.2383\n",
+ "SINGLE_STAR_LIFETIME 15 14.9947\n",
"\n"
]
}
@@ -510,10 +533,11 @@
"eccentricity = 0.0\n",
"metallicity = 0.02\n",
"max_evolution_time = 15000 # Myr. You need to include this argument.\n",
+ "api_log_filename_prefix = TMP_DIR\n",
"\n",
"# Here we set up the argument string that is passed to the bindings\n",
"argstring = \"\"\"\n",
- "binary_c M_1 {M_1} M_2 {M_2} separation {separation} orbital_period {orbital_period} eccentricity {eccentricity} metallicity {metallicity} max_evolution_time {max_evolution_time}\n",
+ "binary_c M_1 {M_1} M_2 {M_2} separation {separation} orbital_period {orbital_period} eccentricity {eccentricity} metallicity {metallicity} max_evolution_time {max_evolution_time} api_log_filename_prefix {api_log_filename_prefix}\n",
"\"\"\".format(\n",
" M_1=M_1,\n",
" M_2=M_2,\n",
@@ -522,6 +546,7 @@
" eccentricity=eccentricity,\n",
" metallicity=metallicity,\n",
" max_evolution_time=max_evolution_time,\n",
+ " api_log_filename_prefix=TMP_DIR\n",
").strip()\n",
"\n",
"from binarycpython import _binary_c_bindings\n",
diff --git a/docs/build/doctrees/nbsphinx/notebook_population.ipynb b/docs/build/doctrees/nbsphinx/notebook_population.ipynb
index 56f3b153c23064e82863f188906d50243e795715..b6a37baa8d90a2f36c0fd19311548ed49e77f173 100644
--- a/docs/build/doctrees/nbsphinx/notebook_population.ipynb
+++ b/docs/build/doctrees/nbsphinx/notebook_population.ipynb
@@ -3,7 +3,9 @@
{
"cell_type": "markdown",
"id": "bbbaafbb-fd7d-4b73-a970-93506ba35d71",
- "metadata": {},
+ "metadata": {
+ "tags": []
+ },
"source": [
"# Running populations with binarycpython\n",
"This notebook will show you how to evolve a population of stars\n",
@@ -27,15 +29,6 @@
"# help(Population) # Uncomment to see the public functions of this object"
]
},
- {
- "cell_type": "markdown",
- "id": "a081ab23-7822-4971-aa82-991548534714",
- "metadata": {},
- "source": [
- "- running ensemble\n",
- "- using M&S grid"
- ]
- },
{
"cell_type": "markdown",
"id": "f268eff3-4e08-4f6b-8b59-f22dba4d2074",
@@ -329,7 +322,7 @@
],
"source": [
"# Add grid variables\n",
- "resolution = {\"M_1\": 20, \"q\": 20, \"per\": 40}\n",
+ "resolution = {\"M_1\": 20}\n",
"\n",
"# Mass\n",
"example_pop.add_grid_variable(\n",
@@ -1125,7 +1118,7 @@
")\n",
"\n",
"# Add grid variables\n",
- "resolution = {\"M_1\": 5, \"q\": 5, \"per\": 5}\n",
+ "resolution = {\"M_1\": 3, \"q\": 3, \"per\": 3}\n",
"\n",
"# Mass\n",
"example_pop.add_grid_variable(\n",
diff --git a/docs/build/doctrees/notebook_individual_systems.doctree b/docs/build/doctrees/notebook_individual_systems.doctree
index 9d602efb727073bda11972d674aef97623b4bce7..5b53131af30bfd3e41de3be0cd1877012043cac3 100644
Binary files a/docs/build/doctrees/notebook_individual_systems.doctree and b/docs/build/doctrees/notebook_individual_systems.doctree differ
diff --git a/docs/build/doctrees/notebook_population.doctree b/docs/build/doctrees/notebook_population.doctree
index 2fe6b3d2cc9149c8f3a8350e8ae7e16a7bbf1060..8dc7f0c81bcae8dba9df8e55481ed6ade245f1cd 100644
Binary files a/docs/build/doctrees/notebook_population.doctree and b/docs/build/doctrees/notebook_population.doctree differ
diff --git a/docs/build/doctrees/readme_link.doctree b/docs/build/doctrees/readme_link.doctree
index e9622f33a0658d2e097976d6d9c3fe3e5368c872..fd66cbc8cbd1f29cc2332d668bdbc6c429422a30 100644
Binary files a/docs/build/doctrees/readme_link.doctree and b/docs/build/doctrees/readme_link.doctree differ
diff --git a/docs/build/doctrees/spacing_functions.doctree b/docs/build/doctrees/spacing_functions.doctree
index 70fd3a19e4682e01551414730b3227beb3555677..8a6ae9a3e6438a8ba8d372d68f765dd1114cded6 100644
Binary files a/docs/build/doctrees/spacing_functions.doctree and b/docs/build/doctrees/spacing_functions.doctree differ
diff --git a/docs/build/html/_modules/binarycpython/utils/custom_logging_functions.html b/docs/build/html/_modules/binarycpython/utils/custom_logging_functions.html
index f99e7c8e62cab92f943fb06b5dd5c9e6bec981be..de6d5f80aa620972a7bfd2adc6f3148ab69e4525 100644
--- a/docs/build/html/_modules/binarycpython/utils/custom_logging_functions.html
+++ b/docs/build/html/_modules/binarycpython/utils/custom_logging_functions.html
@@ -644,9 +644,9 @@
provided by <a href="https://readthedocs.org">Read the Docs</a>.
<br><br>
-Generated on binarycpython git branch: development_version/2.1.7 git revision b3e29831acaa0f53ec69dc9f97f9d49b48d0c6c9 url: <a href="https://gitlab.eps.surrey.ac.uk/ri0005/binary_c-python/-/tree/development_version/2.1.7">git url</a>.
+Generated on binarycpython git branch: master git revision cac51a6dc71daeeb943b70d5598350ab43901299 url: <a href="https://gitlab.eps.surrey.ac.uk/ri0005/binary_c-python/-/tree/master">git url</a>.
<br><br>
-Using binary_c with bit branch branch_david: git revision: "6101:20210807:c5232be5c" url: <a href="https://gitlab.eps.surrey.ac.uk/ri0005/binary_c/-/tree/branch_david">git url</a>.
+Using binary_c with bit branch branch_david: git revision: "6162:20210825:093caf0e9" url: <a href="https://gitlab.eps.surrey.ac.uk/ri0005/binary_c/-/tree/branch_david">git url</a>.
diff --git a/docs/build/html/_modules/binarycpython/utils/distribution_functions.html b/docs/build/html/_modules/binarycpython/utils/distribution_functions.html
index 98d9afd43278a345e1ab8cf6b353bde8e454446b..1cddf50cc54dc1cbc277437ad1bac7f22229235b 100644
--- a/docs/build/html/_modules/binarycpython/utils/distribution_functions.html
+++ b/docs/build/html/_modules/binarycpython/utils/distribution_functions.html
@@ -2482,9 +2482,9 @@
provided by <a href="https://readthedocs.org">Read the Docs</a>.
<br><br>
-Generated on binarycpython git branch: development_version/2.1.7 git revision b3e29831acaa0f53ec69dc9f97f9d49b48d0c6c9 url: <a href="https://gitlab.eps.surrey.ac.uk/ri0005/binary_c-python/-/tree/development_version/2.1.7">git url</a>.
+Generated on binarycpython git branch: master git revision cac51a6dc71daeeb943b70d5598350ab43901299 url: <a href="https://gitlab.eps.surrey.ac.uk/ri0005/binary_c-python/-/tree/master">git url</a>.
<br><br>
-Using binary_c with bit branch branch_david: git revision: "6101:20210807:c5232be5c" url: <a href="https://gitlab.eps.surrey.ac.uk/ri0005/binary_c/-/tree/branch_david">git url</a>.
+Using binary_c with bit branch branch_david: git revision: "6162:20210825:093caf0e9" url: <a href="https://gitlab.eps.surrey.ac.uk/ri0005/binary_c/-/tree/branch_david">git url</a>.
diff --git a/docs/build/html/_modules/binarycpython/utils/functions.html b/docs/build/html/_modules/binarycpython/utils/functions.html
index a4fb372e394c7d29246b26ac7d88c730075c6b91..4e1bbc15df334fcc4d699503ff7fcb1cdca18db2 100644
--- a/docs/build/html/_modules/binarycpython/utils/functions.html
+++ b/docs/build/html/_modules/binarycpython/utils/functions.html
@@ -168,6 +168,7 @@
<span class="kn">import</span> <span class="nn">json</span>
<span class="kn">import</span> <span class="nn">os</span>
+<span class="kn">import</span> <span class="nn">gc</span>
<span class="kn">import</span> <span class="nn">tempfile</span>
<span class="kn">import</span> <span class="nn">copy</span>
<span class="kn">import</span> <span class="nn">inspect</span>
@@ -231,6 +232,35 @@
<span class="n">size</span> <span class="o">+=</span> <span class="nb">sum</span><span class="p">([</span><span class="n">get_size</span><span class="p">(</span><span class="n">i</span><span class="p">,</span> <span class="n">seen</span><span class="p">)</span> <span class="k">for</span> <span class="n">i</span> <span class="ow">in</span> <span class="n">obj</span><span class="p">])</span>
<span class="k">return</span> <span class="n">size</span></div>
+
+<div class="viewcode-block" id="format_ensemble_results"><a class="viewcode-back" href="../../../functions.html#binarycpython.utils.functions.format_ensemble_results">[docs]</a><span class="k">def</span> <span class="nf">format_ensemble_results</span><span class="p">(</span><span class="n">ensemble_dictionary</span><span class="p">):</span>
+ <span class="sd">"""</span>
+<span class="sd"> Function to handle all the steps of formatting the ensemble output again.</span>
+
+<span class="sd"> Input:</span>
+<span class="sd"> ensemble_dictionary: dictionary containing all the ensemble results</span>
+<span class="sd"> """</span>
+
+ <span class="n">original_ensemble_results</span> <span class="o">=</span> <span class="n">ensemble_dictionary</span>
+
+ <span class="n">float_format_ensemble_results</span> <span class="o">=</span> <span class="n">recursive_change_key_to_float</span><span class="p">(</span><span class="n">original_ensemble_results</span><span class="p">)</span>
+ <span class="k">del</span> <span class="n">original_ensemble_results</span>
+ <span class="n">gc</span><span class="o">.</span><span class="n">collect</span><span class="p">()</span>
+
+ <span class="c1"># Then sort the dictionary</span>
+ <span class="n">sorted_ensemble_results</span> <span class="o">=</span> <span class="n">custom_sort_dict</span><span class="p">(</span><span class="n">float_format_ensemble_results</span><span class="p">)</span>
+ <span class="k">del</span> <span class="n">float_format_ensemble_results</span>
+ <span class="n">gc</span><span class="o">.</span><span class="n">collect</span><span class="p">()</span>
+
+ <span class="c1"># Then Change the keys back to a string but with a %g format.</span>
+ <span class="n">reformatted_ensemble_results</span> <span class="o">=</span> <span class="n">recursive_change_key_to_string</span><span class="p">(</span><span class="n">sorted_ensemble_results</span><span class="p">)</span>
+ <span class="k">del</span> <span class="n">sorted_ensemble_results</span>
+ <span class="n">gc</span><span class="o">.</span><span class="n">collect</span><span class="p">()</span>
+
+ <span class="c1"># Put back in the dictionary</span>
+ <span class="k">return</span> <span class="n">reformatted_ensemble_results</span></div>
+
+
<div class="viewcode-block" id="subtract_dicts"><a class="viewcode-back" href="../../../functions.html#binarycpython.utils.functions.subtract_dicts">[docs]</a><span class="k">def</span> <span class="nf">subtract_dicts</span><span class="p">(</span><span class="n">dict_1</span><span class="p">:</span> <span class="nb">dict</span><span class="p">,</span> <span class="n">dict_2</span><span class="p">:</span> <span class="nb">dict</span><span class="p">)</span> <span class="o">-></span> <span class="nb">dict</span><span class="p">:</span>
<span class="sd">"""</span>
<span class="sd"> Function to subtract two dictionaries.</span>
@@ -650,7 +680,7 @@
<span class="c1">########################################################</span>
-<div class="viewcode-block" id="return_binary_c_version_info"><a class="viewcode-back" href="../../../functions.html#binarycpython.utils.functions.return_binary_c_version_info">[docs]</a><span class="k">def</span> <span class="nf">return_binary_c_version_info</span><span class="p">(</span><span class="n">parsed</span><span class="p">:</span> <span class="nb">bool</span> <span class="o">=</span> <span class="kc">False</span><span class="p">)</span> <span class="o">-></span> <span class="n">Union</span><span class="p">[</span><span class="nb">str</span><span class="p">,</span> <span class="nb">dict</span><span class="p">]:</span>
+<div class="viewcode-block" id="return_binary_c_version_info"><a class="viewcode-back" href="../../../functions.html#binarycpython.utils.functions.return_binary_c_version_info">[docs]</a><span class="k">def</span> <span class="nf">return_binary_c_version_info</span><span class="p">(</span><span class="n">parsed</span><span class="p">:</span> <span class="nb">bool</span> <span class="o">=</span> <span class="kc">True</span><span class="p">)</span> <span class="o">-></span> <span class="n">Union</span><span class="p">[</span><span class="nb">str</span><span class="p">,</span> <span class="nb">dict</span><span class="p">]:</span>
<span class="sd">"""</span>
<span class="sd"> Function that returns the version information of binary_c. This function calls the function</span>
<span class="sd"> _binary_c_bindings.return_version_info()</span>
@@ -804,11 +834,19 @@
<span class="n">cleaned</span> <span class="o">=</span> <span class="n">cleaned</span> <span class="o">-</span> <span class="n">ensembles</span>
<span class="n">ensemble_dict</span> <span class="o">=</span> <span class="p">{}</span>
+ <span class="n">ensemble_filter_dict</span> <span class="o">=</span> <span class="p">{}</span>
<span class="k">for</span> <span class="n">el</span> <span class="ow">in</span> <span class="n">ensembles</span><span class="p">:</span>
<span class="n">split_info</span> <span class="o">=</span> <span class="n">el</span><span class="o">.</span><span class="n">split</span><span class="p">(</span><span class="s2">"Ensemble "</span><span class="p">)[</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span><span class="o">.</span><span class="n">split</span><span class="p">(</span><span class="s2">" is "</span><span class="p">)</span>
+
<span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">split_info</span><span class="p">)</span> <span class="o">></span> <span class="mi">1</span><span class="p">:</span>
- <span class="n">ensemble_dict</span><span class="p">[</span><span class="nb">int</span><span class="p">(</span><span class="n">split_info</span><span class="p">[</span><span class="mi">0</span><span class="p">])]</span> <span class="o">=</span> <span class="n">split_info</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span>
+ <span class="k">if</span> <span class="ow">not</span> <span class="n">split_info</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">startswith</span><span class="p">(</span><span class="s1">'filter'</span><span class="p">):</span>
+ <span class="n">ensemble_dict</span><span class="p">[</span><span class="nb">int</span><span class="p">(</span><span class="n">split_info</span><span class="p">[</span><span class="mi">0</span><span class="p">])]</span> <span class="o">=</span> <span class="n">split_info</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span>
+ <span class="k">else</span><span class="p">:</span>
+ <span class="n">filter_no</span> <span class="o">=</span> <span class="nb">int</span><span class="p">(</span><span class="n">split_info</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">replace</span><span class="p">(</span><span class="s1">'filter '</span><span class="p">,</span> <span class="s1">''</span><span class="p">))</span>
+ <span class="n">ensemble_filter_dict</span><span class="p">[</span><span class="n">filter_no</span><span class="p">]</span> <span class="o">=</span> <span class="n">split_info</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span>
+
<span class="n">version_info_dict</span><span class="p">[</span><span class="s2">"ensembles"</span><span class="p">]</span> <span class="o">=</span> <span class="n">ensemble_dict</span> <span class="k">if</span> <span class="n">ensemble_dict</span> <span class="k">else</span> <span class="kc">None</span>
+ <span class="n">version_info_dict</span><span class="p">[</span><span class="s2">"ensemble_filters"</span><span class="p">]</span> <span class="o">=</span> <span class="n">ensemble_filter_dict</span> <span class="k">if</span> <span class="n">ensemble_filter_dict</span> <span class="k">else</span> <span class="kc">None</span>
<span class="c1">##########################</span>
<span class="c1"># macros:</span>
@@ -1636,6 +1674,19 @@
<span class="k">return</span> <span class="n">structure_dict</span></div>
+<div class="viewcode-block" id="count_keys_recursive"><a class="viewcode-back" href="../../../functions.html#binarycpython.utils.functions.count_keys_recursive">[docs]</a><span class="k">def</span> <span class="nf">count_keys_recursive</span><span class="p">(</span><span class="n">input_dict</span><span class="p">):</span>
+ <span class="sd">"""</span>
+<span class="sd"> Function to count the total amount of keys in a dictionary</span>
+<span class="sd"> """</span>
+
+ <span class="n">local_count</span> <span class="o">=</span> <span class="mi">0</span>
+ <span class="k">for</span> <span class="n">key</span> <span class="ow">in</span> <span class="n">input_dict</span><span class="o">.</span><span class="n">keys</span><span class="p">():</span>
+ <span class="n">local_count</span> <span class="o">+=</span> <span class="mi">1</span>
+ <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">input_dict</span><span class="p">[</span><span class="n">key</span><span class="p">],</span> <span class="p">(</span><span class="nb">dict</span><span class="p">,</span> <span class="n">OrderedDict</span><span class="p">)):</span>
+ <span class="n">local_count</span> <span class="o">+=</span> <span class="n">count_keys_recursive</span><span class="p">(</span><span class="n">input_dict</span><span class="p">[</span><span class="n">key</span><span class="p">])</span>
+ <span class="k">return</span> <span class="n">local_count</span></div>
+
+
<div class="viewcode-block" id="merge_dicts"><a class="viewcode-back" href="../../../functions.html#binarycpython.utils.functions.merge_dicts">[docs]</a><span class="k">def</span> <span class="nf">merge_dicts</span><span class="p">(</span><span class="n">dict_1</span><span class="p">:</span> <span class="nb">dict</span><span class="p">,</span> <span class="n">dict_2</span><span class="p">:</span> <span class="nb">dict</span><span class="p">)</span> <span class="o">-></span> <span class="nb">dict</span><span class="p">:</span>
<span class="sd">"""</span>
<span class="sd"> Function to merge two dictionaries in a custom way.</span>
@@ -1761,6 +1812,7 @@
<span class="c1">#</span>
<span class="k">return</span> <span class="n">new_dict</span></div>
+
<div class="viewcode-block" id="update_dicts"><a class="viewcode-back" href="../../../functions.html#binarycpython.utils.functions.update_dicts">[docs]</a><span class="k">def</span> <span class="nf">update_dicts</span><span class="p">(</span><span class="n">dict_1</span><span class="p">:</span> <span class="nb">dict</span><span class="p">,</span> <span class="n">dict_2</span><span class="p">:</span> <span class="nb">dict</span><span class="p">)</span> <span class="o">-></span> <span class="nb">dict</span><span class="p">:</span>
<span class="sd">"""</span>
<span class="sd"> Function to update dict_1 with values of dict_2 in a recursive way.</span>
@@ -1853,70 +1905,23 @@
<span class="k">return</span> <span class="n">new_dict</span></div>
-<div class="viewcode-block" id="count_keys_recursive"><a class="viewcode-back" href="../../../functions.html#binarycpython.utils.functions.count_keys_recursive">[docs]</a><span class="k">def</span> <span class="nf">count_keys_recursive</span><span class="p">(</span><span class="n">input_dict</span><span class="p">):</span>
- <span class="sd">"""</span>
-<span class="sd"> Function to count the total amount of keys in a dictionary</span>
-<span class="sd"> """</span>
-
- <span class="n">local_count</span> <span class="o">=</span> <span class="mi">0</span>
- <span class="k">for</span> <span class="n">key</span> <span class="ow">in</span> <span class="n">input_dict</span><span class="o">.</span><span class="n">keys</span><span class="p">():</span>
- <span class="n">local_count</span> <span class="o">+=</span> <span class="mi">1</span>
- <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">input_dict</span><span class="p">[</span><span class="n">key</span><span class="p">],</span> <span class="p">(</span><span class="nb">dict</span><span class="p">,</span> <span class="n">OrderedDict</span><span class="p">)):</span>
- <span class="n">local_count</span> <span class="o">+=</span> <span class="n">count_keys_recursive</span><span class="p">(</span><span class="n">input_dict</span><span class="p">[</span><span class="n">key</span><span class="p">])</span>
- <span class="k">return</span> <span class="n">local_count</span></div>
-
-
-<div class="viewcode-block" id="recursive_change_key_to_float"><a class="viewcode-back" href="../../../functions.html#binarycpython.utils.functions.recursive_change_key_to_float">[docs]</a><span class="k">def</span> <span class="nf">recursive_change_key_to_float</span><span class="p">(</span><span class="n">input_dict</span><span class="p">):</span>
+<div class="viewcode-block" id="multiply_values_dict"><a class="viewcode-back" href="../../../functions.html#binarycpython.utils.functions.multiply_values_dict">[docs]</a><span class="k">def</span> <span class="nf">multiply_values_dict</span><span class="p">(</span><span class="n">input_dict</span><span class="p">,</span> <span class="n">factor</span><span class="p">):</span>
<span class="sd">"""</span>
-<span class="sd"> Function to recursively change the key to float</span>
-
-<span class="sd"> This only works if the dict contains just sub-dicts or numbers/strings.</span>
-<span class="sd"> Does not work with lists as values</span>
-<span class="sd"> """</span>
-
- <span class="n">new_dict</span> <span class="o">=</span> <span class="n">OrderedDict</span><span class="p">()</span> <span class="c1"># TODO: check if this still works</span>
-
- <span class="k">for</span> <span class="n">key</span> <span class="ow">in</span> <span class="n">input_dict</span><span class="p">:</span>
- <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">input_dict</span><span class="p">[</span><span class="n">key</span><span class="p">],</span> <span class="p">(</span><span class="nb">dict</span><span class="p">,</span> <span class="n">OrderedDict</span><span class="p">)):</span>
- <span class="k">try</span><span class="p">:</span>
- <span class="n">num_key</span> <span class="o">=</span> <span class="nb">float</span><span class="p">(</span><span class="n">key</span><span class="p">)</span>
- <span class="n">new_dict</span><span class="p">[</span><span class="n">num_key</span><span class="p">]</span> <span class="o">=</span> <span class="n">recursive_change_key_to_float</span><span class="p">(</span><span class="n">copy</span><span class="o">.</span><span class="n">deepcopy</span><span class="p">(</span><span class="n">input_dict</span><span class="p">[</span><span class="n">key</span><span class="p">]))</span>
- <span class="k">except</span> <span class="ne">ValueError</span><span class="p">:</span>
- <span class="n">new_dict</span><span class="p">[</span><span class="n">key</span><span class="p">]</span> <span class="o">=</span> <span class="n">recursive_change_key_to_float</span><span class="p">(</span><span class="n">copy</span><span class="o">.</span><span class="n">deepcopy</span><span class="p">(</span><span class="n">input_dict</span><span class="p">[</span><span class="n">key</span><span class="p">]))</span>
- <span class="k">else</span><span class="p">:</span>
- <span class="k">try</span><span class="p">:</span>
- <span class="n">num_key</span> <span class="o">=</span> <span class="nb">float</span><span class="p">(</span><span class="n">key</span><span class="p">)</span>
- <span class="n">new_dict</span><span class="p">[</span><span class="n">num_key</span><span class="p">]</span> <span class="o">=</span> <span class="n">input_dict</span><span class="p">[</span><span class="n">key</span><span class="p">]</span>
- <span class="k">except</span> <span class="ne">ValueError</span><span class="p">:</span>
- <span class="n">new_dict</span><span class="p">[</span><span class="n">key</span><span class="p">]</span> <span class="o">=</span> <span class="n">input_dict</span><span class="p">[</span><span class="n">key</span><span class="p">]</span>
-
- <span class="k">return</span> <span class="n">new_dict</span></div>
+<span class="sd"> Function that goes over dictionary recursively and multiplies the value if possible by a factor</span>
-<div class="viewcode-block" id="recursive_change_key_to_string"><a class="viewcode-back" href="../../../functions.html#binarycpython.utils.functions.recursive_change_key_to_string">[docs]</a><span class="k">def</span> <span class="nf">recursive_change_key_to_string</span><span class="p">(</span><span class="n">input_dict</span><span class="p">):</span>
- <span class="sd">"""</span>
-<span class="sd"> Function to recursively change the key back to a string but this time in a format that we decide</span>
+<span class="sd"> If the key equals "general_info", the multiplication gets skipped</span>
<span class="sd"> """</span>
- <span class="n">new_dict</span> <span class="o">=</span> <span class="n">OrderedDict</span><span class="p">()</span> <span class="c1"># TODO: check if this still works</span>
-
<span class="k">for</span> <span class="n">key</span> <span class="ow">in</span> <span class="n">input_dict</span><span class="p">:</span>
- <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">input_dict</span><span class="p">[</span><span class="n">key</span><span class="p">],</span> <span class="p">(</span><span class="nb">dict</span><span class="p">,</span> <span class="n">OrderedDict</span><span class="p">)):</span>
- <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">key</span><span class="p">,</span> <span class="p">(</span><span class="nb">int</span><span class="p">,</span> <span class="nb">float</span><span class="p">)):</span>
- <span class="n">string_key</span> <span class="o">=</span> <span class="s2">"</span><span class="si">{:g}</span><span class="s2">"</span><span class="o">.</span><span class="n">format</span><span class="p">(</span><span class="n">key</span><span class="p">)</span>
- <span class="n">new_dict</span><span class="p">[</span><span class="n">string_key</span><span class="p">]</span> <span class="o">=</span> <span class="n">recursive_change_key_to_string</span><span class="p">(</span><span class="n">copy</span><span class="o">.</span><span class="n">deepcopy</span><span class="p">(</span><span class="n">input_dict</span><span class="p">[</span><span class="n">key</span><span class="p">]))</span>
- <span class="k">else</span><span class="p">:</span>
- <span class="n">new_dict</span><span class="p">[</span><span class="n">key</span><span class="p">]</span> <span class="o">=</span> <span class="n">recursive_change_key_to_string</span><span class="p">(</span><span class="n">copy</span><span class="o">.</span><span class="n">deepcopy</span><span class="p">(</span><span class="n">input_dict</span><span class="p">[</span><span class="n">key</span><span class="p">]))</span>
- <span class="k">else</span><span class="p">:</span>
- <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">key</span><span class="p">,</span> <span class="p">(</span><span class="nb">int</span><span class="p">,</span> <span class="nb">float</span><span class="p">)):</span>
- <span class="n">string_key</span> <span class="o">=</span> <span class="s2">"</span><span class="si">{:g}</span><span class="s2">"</span><span class="o">.</span><span class="n">format</span><span class="p">(</span><span class="n">key</span><span class="p">)</span>
- <span class="n">new_dict</span><span class="p">[</span><span class="n">string_key</span><span class="p">]</span> <span class="o">=</span> <span class="n">input_dict</span><span class="p">[</span><span class="n">key</span><span class="p">]</span>
+ <span class="k">if</span> <span class="ow">not</span> <span class="n">key</span> <span class="o">==</span> <span class="s1">'general_info'</span><span class="p">:</span>
+ <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">input_dict</span><span class="p">[</span><span class="n">key</span><span class="p">],</span> <span class="p">(</span><span class="nb">dict</span><span class="p">,</span> <span class="n">OrderedDict</span><span class="p">)):</span>
+ <span class="n">input_dict</span><span class="p">[</span><span class="n">key</span><span class="p">]</span> <span class="o">=</span> <span class="n">multiply_values_dict</span><span class="p">(</span><span class="n">input_dict</span><span class="p">[</span><span class="n">key</span><span class="p">],</span> <span class="n">factor</span><span class="p">)</span>
<span class="k">else</span><span class="p">:</span>
- <span class="n">new_dict</span><span class="p">[</span><span class="n">key</span><span class="p">]</span> <span class="o">=</span> <span class="n">input_dict</span><span class="p">[</span><span class="n">key</span><span class="p">]</span>
-
- <span class="k">return</span> <span class="n">new_dict</span></div>
+ <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">input_dict</span><span class="p">[</span><span class="n">key</span><span class="p">],</span> <span class="p">(</span><span class="nb">int</span><span class="p">,</span> <span class="nb">float</span><span class="p">)):</span>
+ <span class="n">input_dict</span><span class="p">[</span><span class="n">key</span><span class="p">]</span> <span class="o">=</span> <span class="n">input_dict</span><span class="p">[</span><span class="n">key</span><span class="p">]</span> <span class="o">*</span> <span class="n">factor</span>
+ <span class="k">return</span> <span class="n">input_dict</span></div>
-<span class="c1"># New method to create a ordered dictionary</span>
<div class="viewcode-block" id="custom_sort_dict"><a class="viewcode-back" href="../../../functions.html#binarycpython.utils.functions.custom_sort_dict">[docs]</a><span class="k">def</span> <span class="nf">custom_sort_dict</span><span class="p">(</span><span class="n">input_dict</span><span class="p">):</span>
<span class="sd">"""</span>
<span class="sd"> Returns a dictionary that is ordered, but can handle numbers better than normal OrderedDict</span>
@@ -1968,26 +1973,58 @@
<span class="k">return</span> <span class="n">input_dict</span></div>
-<div class="viewcode-block" id="multiply_values_dict"><a class="viewcode-back" href="../../../functions.html#binarycpython.utils.functions.multiply_values_dict">[docs]</a><span class="k">def</span> <span class="nf">multiply_values_dict</span><span class="p">(</span><span class="n">input_dict</span><span class="p">,</span> <span class="n">factor</span><span class="p">):</span>
+<div class="viewcode-block" id="recursive_change_key_to_float"><a class="viewcode-back" href="../../../functions.html#binarycpython.utils.functions.recursive_change_key_to_float">[docs]</a><span class="k">def</span> <span class="nf">recursive_change_key_to_float</span><span class="p">(</span><span class="n">input_dict</span><span class="p">):</span>
<span class="sd">"""</span>
-<span class="sd"> Function that goes over dictionary recursively and multiplies the value if possible by a factor</span>
+<span class="sd"> Function to recursively change the key to float</span>
-<span class="sd"> If the key equals "general_info", the multiplication gets skipped</span>
+<span class="sd"> This only works if the dict contains just sub-dicts or numbers/strings.</span>
+<span class="sd"> Does not work with lists as values</span>
<span class="sd"> """</span>
+ <span class="n">new_dict</span> <span class="o">=</span> <span class="n">OrderedDict</span><span class="p">()</span> <span class="c1"># TODO: check if this still works</span>
+
<span class="k">for</span> <span class="n">key</span> <span class="ow">in</span> <span class="n">input_dict</span><span class="p">:</span>
- <span class="k">if</span> <span class="ow">not</span> <span class="n">key</span> <span class="o">==</span> <span class="s1">'general_info'</span><span class="p">:</span>
- <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">input_dict</span><span class="p">[</span><span class="n">key</span><span class="p">],</span> <span class="p">(</span><span class="nb">dict</span><span class="p">,</span> <span class="n">OrderedDict</span><span class="p">)):</span>
- <span class="n">input_dict</span><span class="p">[</span><span class="n">key</span><span class="p">]</span> <span class="o">=</span> <span class="n">multiply_values_dict</span><span class="p">(</span><span class="n">input_dict</span><span class="p">[</span><span class="n">key</span><span class="p">],</span> <span class="n">factor</span><span class="p">)</span>
+ <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">input_dict</span><span class="p">[</span><span class="n">key</span><span class="p">],</span> <span class="p">(</span><span class="nb">dict</span><span class="p">,</span> <span class="n">OrderedDict</span><span class="p">)):</span>
+ <span class="k">try</span><span class="p">:</span>
+ <span class="n">num_key</span> <span class="o">=</span> <span class="nb">float</span><span class="p">(</span><span class="n">key</span><span class="p">)</span>
+ <span class="n">new_dict</span><span class="p">[</span><span class="n">num_key</span><span class="p">]</span> <span class="o">=</span> <span class="n">recursive_change_key_to_float</span><span class="p">(</span><span class="n">copy</span><span class="o">.</span><span class="n">deepcopy</span><span class="p">(</span><span class="n">input_dict</span><span class="p">[</span><span class="n">key</span><span class="p">]))</span>
+ <span class="k">except</span> <span class="ne">ValueError</span><span class="p">:</span>
+ <span class="n">new_dict</span><span class="p">[</span><span class="n">key</span><span class="p">]</span> <span class="o">=</span> <span class="n">recursive_change_key_to_float</span><span class="p">(</span><span class="n">copy</span><span class="o">.</span><span class="n">deepcopy</span><span class="p">(</span><span class="n">input_dict</span><span class="p">[</span><span class="n">key</span><span class="p">]))</span>
+ <span class="k">else</span><span class="p">:</span>
+ <span class="k">try</span><span class="p">:</span>
+ <span class="n">num_key</span> <span class="o">=</span> <span class="nb">float</span><span class="p">(</span><span class="n">key</span><span class="p">)</span>
+ <span class="n">new_dict</span><span class="p">[</span><span class="n">num_key</span><span class="p">]</span> <span class="o">=</span> <span class="n">input_dict</span><span class="p">[</span><span class="n">key</span><span class="p">]</span>
+ <span class="k">except</span> <span class="ne">ValueError</span><span class="p">:</span>
+ <span class="n">new_dict</span><span class="p">[</span><span class="n">key</span><span class="p">]</span> <span class="o">=</span> <span class="n">input_dict</span><span class="p">[</span><span class="n">key</span><span class="p">]</span>
+
+ <span class="k">return</span> <span class="n">new_dict</span></div>
+
+
+<div class="viewcode-block" id="recursive_change_key_to_string"><a class="viewcode-back" href="../../../functions.html#binarycpython.utils.functions.recursive_change_key_to_string">[docs]</a><span class="k">def</span> <span class="nf">recursive_change_key_to_string</span><span class="p">(</span><span class="n">input_dict</span><span class="p">):</span>
+ <span class="sd">"""</span>
+<span class="sd"> Function to recursively change the key back to a string but this time in a format that we decide</span>
+<span class="sd"> """</span>
+
+ <span class="n">new_dict</span> <span class="o">=</span> <span class="n">OrderedDict</span><span class="p">()</span> <span class="c1"># TODO: check if this still works</span>
+
+ <span class="k">for</span> <span class="n">key</span> <span class="ow">in</span> <span class="n">input_dict</span><span class="p">:</span>
+ <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">input_dict</span><span class="p">[</span><span class="n">key</span><span class="p">],</span> <span class="p">(</span><span class="nb">dict</span><span class="p">,</span> <span class="n">OrderedDict</span><span class="p">)):</span>
+ <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">key</span><span class="p">,</span> <span class="p">(</span><span class="nb">int</span><span class="p">,</span> <span class="nb">float</span><span class="p">)):</span>
+ <span class="n">string_key</span> <span class="o">=</span> <span class="s2">"</span><span class="si">{:g}</span><span class="s2">"</span><span class="o">.</span><span class="n">format</span><span class="p">(</span><span class="n">key</span><span class="p">)</span>
+ <span class="n">new_dict</span><span class="p">[</span><span class="n">string_key</span><span class="p">]</span> <span class="o">=</span> <span class="n">recursive_change_key_to_string</span><span class="p">(</span><span class="n">copy</span><span class="o">.</span><span class="n">deepcopy</span><span class="p">(</span><span class="n">input_dict</span><span class="p">[</span><span class="n">key</span><span class="p">]))</span>
<span class="k">else</span><span class="p">:</span>
- <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">input_dict</span><span class="p">[</span><span class="n">key</span><span class="p">],</span> <span class="p">(</span><span class="nb">int</span><span class="p">,</span> <span class="nb">float</span><span class="p">)):</span>
- <span class="n">input_dict</span><span class="p">[</span><span class="n">key</span><span class="p">]</span> <span class="o">=</span> <span class="n">input_dict</span><span class="p">[</span><span class="n">key</span><span class="p">]</span> <span class="o">*</span> <span class="n">factor</span>
+ <span class="n">new_dict</span><span class="p">[</span><span class="n">key</span><span class="p">]</span> <span class="o">=</span> <span class="n">recursive_change_key_to_string</span><span class="p">(</span><span class="n">copy</span><span class="o">.</span><span class="n">deepcopy</span><span class="p">(</span><span class="n">input_dict</span><span class="p">[</span><span class="n">key</span><span class="p">]))</span>
+ <span class="k">else</span><span class="p">:</span>
+ <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">key</span><span class="p">,</span> <span class="p">(</span><span class="nb">int</span><span class="p">,</span> <span class="nb">float</span><span class="p">)):</span>
+ <span class="n">string_key</span> <span class="o">=</span> <span class="s2">"</span><span class="si">{:g}</span><span class="s2">"</span><span class="o">.</span><span class="n">format</span><span class="p">(</span><span class="n">key</span><span class="p">)</span>
+ <span class="n">new_dict</span><span class="p">[</span><span class="n">string_key</span><span class="p">]</span> <span class="o">=</span> <span class="n">input_dict</span><span class="p">[</span><span class="n">key</span><span class="p">]</span>
+ <span class="k">else</span><span class="p">:</span>
+ <span class="n">new_dict</span><span class="p">[</span><span class="n">key</span><span class="p">]</span> <span class="o">=</span> <span class="n">input_dict</span><span class="p">[</span><span class="n">key</span><span class="p">]</span>
- <span class="k">return</span> <span class="n">input_dict</span></div>
+ <span class="k">return</span> <span class="n">new_dict</span></div>
<span class="c1">#####</span>
-
<div class="viewcode-block" id="extract_ensemble_json_from_string"><a class="viewcode-back" href="../../../functions.html#binarycpython.utils.functions.extract_ensemble_json_from_string">[docs]</a><span class="k">def</span> <span class="nf">extract_ensemble_json_from_string</span><span class="p">(</span><span class="n">binary_c_output</span><span class="p">:</span> <span class="nb">str</span><span class="p">)</span> <span class="o">-></span> <span class="nb">dict</span><span class="p">:</span>
<span class="sd">"""</span>
<span class="sd"> Function to extract the ensemble_json information from a raw binary_c output string</span>
@@ -2033,6 +2070,44 @@
<span class="k">return</span> <span class="n">json_dict</span></div>
+<div class="viewcode-block" id="handle_ensemble_string_to_json"><a class="viewcode-back" href="../../../functions.html#binarycpython.utils.functions.handle_ensemble_string_to_json">[docs]</a><span class="k">def</span> <span class="nf">handle_ensemble_string_to_json</span><span class="p">(</span><span class="n">raw_output</span><span class="p">):</span>
+ <span class="sd">"""</span>
+<span class="sd"> Function that deals with the raw output of the ensemble and</span>
+<span class="sd"> creates a working JSON dictionary out of it.</span>
+
+<span class="sd"> Having this wrapper makes it easy to</span>
+
+<span class="sd"> Args:</span>
+<span class="sd"> raw_output: raw output of the ensemble dump by binary_c</span>
+
+<span class="sd"> Returns:</span>
+<span class="sd"> json.loads(raw_output, cls=binarycDecoder)</span>
+
+<span class="sd"> """</span>
+
+ <span class="c1"># return json.loads(json.dumps(ast.literal_eval(raw_output)), cls=binarycDecoder)</span>
+ <span class="k">return</span> <span class="n">json</span><span class="o">.</span><span class="n">loads</span><span class="p">(</span><span class="n">raw_output</span><span class="p">,</span> <span class="bp">cls</span><span class="o">=</span><span class="n">binarycDecoder</span><span class="p">)</span></div>
+
+
+<div class="viewcode-block" id="binaryc_json_serializer"><a class="viewcode-back" href="../../../functions.html#binarycpython.utils.functions.binaryc_json_serializer">[docs]</a><span class="k">def</span> <span class="nf">binaryc_json_serializer</span><span class="p">(</span><span class="n">obj</span><span class="p">:</span> <span class="n">Any</span><span class="p">)</span> <span class="o">-></span> <span class="n">Any</span><span class="p">:</span>
+ <span class="sd">"""</span>
+<span class="sd"> Custom serialiser for binary_c to use when functions are present in the dictionary</span>
+<span class="sd"> that we want to export.</span>
+
+<span class="sd"> Function objects will be turned into str representations of themselves</span>
+
+<span class="sd"> Args:</span>
+<span class="sd"> obj: The object that might not be serialisable</span>
+
+<span class="sd"> Returns:</span>
+<span class="sd"> Either string representation of object if the object is a function, or the object itself</span>
+<span class="sd"> """</span>
+
+ <span class="k">if</span> <span class="n">inspect</span><span class="o">.</span><span class="n">isfunction</span><span class="p">(</span><span class="n">obj</span><span class="p">)</span> <span class="ow">or</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">obj</span><span class="p">,</span> <span class="n">py_rinterpolate</span><span class="o">.</span><span class="n">Rinterpolate</span><span class="p">):</span>
+ <span class="k">return</span> <span class="nb">str</span><span class="p">(</span><span class="n">obj</span><span class="p">)</span>
+ <span class="k">return</span> <span class="n">obj</span></div>
+
+
<div class="viewcode-block" id="binarycDecoder"><a class="viewcode-back" href="../../../functions.html#binarycpython.utils.functions.binarycDecoder">[docs]</a><span class="k">class</span> <span class="nc">binarycDecoder</span><span class="p">(</span><span class="n">json</span><span class="o">.</span><span class="n">JSONDecoder</span><span class="p">):</span>
<span class="sd">"""</span>
<span class="sd"> Custom decoder to transform the numbers that are strings to actual floats</span>
@@ -2089,44 +2164,6 @@
<span class="c1"># Let the base class default method raise the TypeError</span>
<span class="k">return</span> <span class="n">json</span><span class="o">.</span><span class="n">JSONEncoder</span><span class="o">.</span><span class="n">default</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">o</span><span class="p">)</span></div></div>
-
-
-<div class="viewcode-block" id="binaryc_json_serializer"><a class="viewcode-back" href="../../../functions.html#binarycpython.utils.functions.binaryc_json_serializer">[docs]</a><span class="k">def</span> <span class="nf">binaryc_json_serializer</span><span class="p">(</span><span class="n">obj</span><span class="p">:</span> <span class="n">Any</span><span class="p">)</span> <span class="o">-></span> <span class="n">Any</span><span class="p">:</span>
- <span class="sd">"""</span>
-<span class="sd"> Custom serialiser for binary_c to use when functions are present in the dictionary</span>
-<span class="sd"> that we want to export.</span>
-
-<span class="sd"> Function objects will be turned into str representations of themselves</span>
-
-<span class="sd"> Args:</span>
-<span class="sd"> obj: The object that might not be serialisable</span>
-
-<span class="sd"> Returns:</span>
-<span class="sd"> Either string representation of object if the object is a function, or the object itself</span>
-<span class="sd"> """</span>
-
- <span class="k">if</span> <span class="n">inspect</span><span class="o">.</span><span class="n">isfunction</span><span class="p">(</span><span class="n">obj</span><span class="p">)</span> <span class="ow">or</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">obj</span><span class="p">,</span> <span class="n">py_rinterpolate</span><span class="o">.</span><span class="n">Rinterpolate</span><span class="p">):</span>
- <span class="k">return</span> <span class="nb">str</span><span class="p">(</span><span class="n">obj</span><span class="p">)</span>
- <span class="k">return</span> <span class="n">obj</span></div>
-
-
-<div class="viewcode-block" id="handle_ensemble_string_to_json"><a class="viewcode-back" href="../../../functions.html#binarycpython.utils.functions.handle_ensemble_string_to_json">[docs]</a><span class="k">def</span> <span class="nf">handle_ensemble_string_to_json</span><span class="p">(</span><span class="n">raw_output</span><span class="p">):</span>
- <span class="sd">"""</span>
-<span class="sd"> Function that deals with the raw output of the ensemble and</span>
-<span class="sd"> creates a working JSON dictionary out of it.</span>
-
-<span class="sd"> Having this wrapper makes it easy to</span>
-
-<span class="sd"> Args:</span>
-<span class="sd"> raw_output: raw output of the ensemble dump by binary_c</span>
-
-<span class="sd"> Returns:</span>
-<span class="sd"> json.loads(raw_output, cls=binarycDecoder)</span>
-
-<span class="sd"> """</span>
-
- <span class="c1"># return json.loads(json.dumps(ast.literal_eval(raw_output)), cls=binarycDecoder)</span>
- <span class="k">return</span> <span class="n">json</span><span class="o">.</span><span class="n">loads</span><span class="p">(</span><span class="n">raw_output</span><span class="p">,</span> <span class="bp">cls</span><span class="o">=</span><span class="n">binarycDecoder</span><span class="p">)</span></div>
</pre></div>
</div>
@@ -2153,9 +2190,9 @@
provided by <a href="https://readthedocs.org">Read the Docs</a>.
<br><br>
-Generated on binarycpython git branch: development_version/2.1.7 git revision b3e29831acaa0f53ec69dc9f97f9d49b48d0c6c9 url: <a href="https://gitlab.eps.surrey.ac.uk/ri0005/binary_c-python/-/tree/development_version/2.1.7">git url</a>.
+Generated on binarycpython git branch: master git revision cac51a6dc71daeeb943b70d5598350ab43901299 url: <a href="https://gitlab.eps.surrey.ac.uk/ri0005/binary_c-python/-/tree/master">git url</a>.
<br><br>
-Using binary_c with bit branch branch_david: git revision: "6101:20210807:c5232be5c" url: <a href="https://gitlab.eps.surrey.ac.uk/ri0005/binary_c/-/tree/branch_david">git url</a>.
+Using binary_c with bit branch branch_david: git revision: "6162:20210825:093caf0e9" url: <a href="https://gitlab.eps.surrey.ac.uk/ri0005/binary_c/-/tree/branch_david">git url</a>.
diff --git a/docs/build/html/_modules/binarycpython/utils/grid.html b/docs/build/html/_modules/binarycpython/utils/grid.html
index 12f8809189ff82f4ab10c4281f398cc2243e2ef5..12c1a2512766f481cb452be0ac338af30d0a7a11 100644
--- a/docs/build/html/_modules/binarycpython/utils/grid.html
+++ b/docs/build/html/_modules/binarycpython/utils/grid.html
@@ -230,6 +230,7 @@
<span class="n">custom_sort_dict</span><span class="p">,</span>
<span class="n">recursive_change_key_to_string</span><span class="p">,</span>
<span class="n">multiply_values_dict</span><span class="p">,</span>
+ <span class="n">format_ensemble_results</span><span class="p">,</span>
<span class="p">)</span>
@@ -532,7 +533,7 @@
<span class="n">probdist</span><span class="p">:</span> <span class="nb">str</span><span class="p">,</span>
<span class="n">dphasevol</span><span class="p">:</span> <span class="n">Union</span><span class="p">[</span><span class="nb">str</span><span class="p">,</span> <span class="nb">int</span><span class="p">],</span>
<span class="n">parameter_name</span><span class="p">:</span> <span class="nb">str</span><span class="p">,</span>
- <span class="n">gridtype</span><span class="p">:</span> <span class="nb">str</span> <span class="o">=</span> <span class="s2">"edge"</span><span class="p">,</span>
+ <span class="n">gridtype</span><span class="p">:</span> <span class="nb">str</span> <span class="o">=</span> <span class="s2">"centred"</span><span class="p">,</span>
<span class="n">branchpoint</span><span class="p">:</span> <span class="nb">int</span> <span class="o">=</span> <span class="mi">0</span><span class="p">,</span>
<span class="n">precode</span><span class="p">:</span> <span class="n">Union</span><span class="p">[</span><span class="nb">str</span><span class="p">,</span> <span class="kc">None</span><span class="p">]</span> <span class="o">=</span> <span class="kc">None</span><span class="p">,</span>
<span class="n">condition</span><span class="p">:</span> <span class="n">Union</span><span class="p">[</span><span class="nb">str</span><span class="p">,</span> <span class="kc">None</span><span class="p">]</span> <span class="o">=</span> <span class="kc">None</span><span class="p">,</span>
@@ -555,25 +556,25 @@
<span class="sd"> name:</span>
<span class="sd"> name of parameter. This is evaluated as a parameter and you can use it throughout</span>
<span class="sd"> the rest of the function</span>
-<span class="sd"> </span>
+
<span class="sd"> Examples:</span>
<span class="sd"> name = 'lnm1'</span>
<span class="sd"> longname:</span>
<span class="sd"> Long name of parameter</span>
-<span class="sd"> </span>
+
<span class="sd"> Examples:</span>
<span class="sd"> longname = 'Primary mass'</span>
<span class="sd"> range:</span>
<span class="sd"> Range of values to take. Does not get used really, the spacingfunction is used to</span>
<span class="sd"> get the values from</span>
-<span class="sd"> </span>
+
<span class="sd"> Examples:</span>
<span class="sd"> range = [math.log(m_min), math.log(m_max)]</span>
<span class="sd"> resolution:</span>
<span class="sd"> Resolution of the sampled range (amount of samples).</span>
<span class="sd"> TODO: check if this is used anywhere</span>
-<span class="sd"> Examples: </span>
+<span class="sd"> Examples:</span>
<span class="sd"> resolution = resolution["M_1"]</span>
<span class="sd"> spacingfunction:</span>
<span class="sd"> Function determining how the range is sampled. You can either use a real function,</span>
@@ -586,12 +587,12 @@
<span class="sd"> precode:</span>
<span class="sd"> Extra room for some code. This code will be evaluated within the loop of the</span>
<span class="sd"> sampling function (i.e. a value for lnm1 is chosen already)</span>
-<span class="sd"> </span>
+
<span class="sd"> Examples:</span>
<span class="sd"> precode = 'M_1=math.exp(lnm1);'</span>
<span class="sd"> probdist:</span>
<span class="sd"> Function determining the probability that gets assigned to the sampled parameter</span>
-<span class="sd"> </span>
+
<span class="sd"> Examples:</span>
<span class="sd"> probdist = 'Kroupa2001(M_1)*M_1'</span>
<span class="sd"> dphasevol:</span>
@@ -605,7 +606,7 @@
<span class="sd"> condition = 'self.grid_options['binary']==1'</span>
<span class="sd"> gridtype:</span>
<span class="sd"> Method on how the value range is sampled. Can be either 'edge' (steps starting at</span>
-<span class="sd"> the lower edge of the value range) or 'center'</span>
+<span class="sd"> the lower edge of the value range) or 'centred'</span>
<span class="sd"> (steps starting at lower edge + 0.5 * stepsize).</span>
<span class="sd"> """</span>
@@ -628,6 +629,11 @@
<span class="s2">"grid_variable_number"</span><span class="p">:</span> <span class="nb">len</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">grid_options</span><span class="p">[</span><span class="s2">"_grid_variables"</span><span class="p">]),</span>
<span class="p">}</span>
+ <span class="c1"># Check for gridtype input</span>
+ <span class="k">if</span> <span class="ow">not</span> <span class="n">gridtype</span> <span class="ow">in</span> <span class="p">[</span><span class="s1">'edge'</span><span class="p">,</span> <span class="s1">'centred'</span><span class="p">]:</span>
+ <span class="n">msg</span> <span class="o">=</span> <span class="s2">"Unknown gridtype value. Please start another one"</span>
+ <span class="k">raise</span> <span class="ne">ValueError</span><span class="p">(</span><span class="n">msg</span><span class="p">)</span>
+
<span class="c1"># Load it into the grid_options</span>
<span class="bp">self</span><span class="o">.</span><span class="n">grid_options</span><span class="p">[</span><span class="s2">"_grid_variables"</span><span class="p">][</span><span class="n">grid_variable</span><span class="p">[</span><span class="s2">"name"</span><span class="p">]]</span> <span class="o">=</span> <span class="n">grid_variable</span>
<span class="n">verbose_print</span><span class="p">(</span>
@@ -949,6 +955,9 @@
<span class="s2">"zero_prob_stars_skipped"</span><span class="p">:</span> <span class="bp">self</span><span class="o">.</span><span class="n">grid_options</span><span class="p">[</span><span class="s1">'_zero_prob_stars_skipped'</span><span class="p">]</span>
<span class="p">}</span>
+ <span class="c1"># Add analytics dict to the metadata too:</span>
+ <span class="bp">self</span><span class="o">.</span><span class="n">grid_ensemble_results</span><span class="p">[</span><span class="s1">'metadata'</span><span class="p">]</span><span class="o">.</span><span class="n">update</span><span class="p">(</span><span class="n">analytics_dict</span><span class="p">)</span>
+
<span class="c1">##</span>
<span class="c1"># Clean up code: remove files, unset values, unload interpolators etc. This is placed in the general evolve function,</span>
<span class="c1"># because that makes for easier control</span>
@@ -1114,33 +1123,6 @@
<span class="k">for</span> <span class="n">_</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">amt_cores</span><span class="p">):</span>
<span class="n">job_queue</span><span class="o">.</span><span class="n">put</span><span class="p">(</span><span class="s2">"STOP"</span><span class="p">)</span>
-<div class="viewcode-block" id="Population.format_ensemble_results"><a class="viewcode-back" href="../../../grid.html#binarycpython.utils.grid.Population.format_ensemble_results">[docs]</a> <span class="k">def</span> <span class="nf">format_ensemble_results</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">ensemble_dictionary</span><span class="p">):</span>
- <span class="sd">"""</span>
-<span class="sd"> Function to handle all the steps of formatting the ensemble output again.</span>
-
-<span class="sd"> Input:</span>
-<span class="sd"> ensemble_dictionary: dictionary containing all the ensemble results</span>
-<span class="sd"> """</span>
-
- <span class="n">original_ensemble_results</span> <span class="o">=</span> <span class="n">ensemble_dictionary</span>
-
- <span class="n">float_format_ensemble_results</span> <span class="o">=</span> <span class="n">recursive_change_key_to_float</span><span class="p">(</span><span class="n">original_ensemble_results</span><span class="p">)</span>
- <span class="k">del</span> <span class="n">original_ensemble_results</span>
- <span class="n">gc</span><span class="o">.</span><span class="n">collect</span><span class="p">()</span>
-
- <span class="c1"># Then sort the dictionary</span>
- <span class="n">sorted_ensemble_results</span> <span class="o">=</span> <span class="n">custom_sort_dict</span><span class="p">(</span><span class="n">float_format_ensemble_results</span><span class="p">)</span>
- <span class="k">del</span> <span class="n">float_format_ensemble_results</span>
- <span class="n">gc</span><span class="o">.</span><span class="n">collect</span><span class="p">()</span>
-
- <span class="c1"># Then Change the keys back to a string but with a %g format.</span>
- <span class="n">reformatted_ensemble_results</span> <span class="o">=</span> <span class="n">recursive_change_key_to_string</span><span class="p">(</span><span class="n">sorted_ensemble_results</span><span class="p">)</span>
- <span class="k">del</span> <span class="n">sorted_ensemble_results</span>
- <span class="n">gc</span><span class="o">.</span><span class="n">collect</span><span class="p">()</span>
-
- <span class="c1"># Put back in the dictionary</span>
- <span class="k">return</span> <span class="n">reformatted_ensemble_results</span></div>
-
<span class="k">def</span> <span class="nf">_evolve_population_grid</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
<span class="sd">"""</span>
<span class="sd"> Function that handles running the population using multiprocessing.</span>
@@ -1202,7 +1184,7 @@
<span class="k">break</span>
<span class="c1"># Extra ensemble result manipulation:</span>
- <span class="n">combined_output_dict</span><span class="p">[</span><span class="s1">'ensemble_results'</span><span class="p">][</span><span class="s1">'ensemble'</span><span class="p">]</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">format_ensemble_results</span><span class="p">(</span><span class="n">combined_output_dict</span><span class="p">[</span><span class="s1">'ensemble_results'</span><span class="p">]</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s1">'ensemble'</span><span class="p">,</span> <span class="p">{}))</span>
+ <span class="n">combined_output_dict</span><span class="p">[</span><span class="s1">'ensemble_results'</span><span class="p">][</span><span class="s1">'ensemble'</span><span class="p">]</span> <span class="o">=</span> <span class="n">format_ensemble_results</span><span class="p">(</span><span class="n">combined_output_dict</span><span class="p">[</span><span class="s1">'ensemble_results'</span><span class="p">]</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s1">'ensemble'</span><span class="p">,</span> <span class="p">{}))</span>
<span class="n">gc</span><span class="o">.</span><span class="n">collect</span><span class="p">()</span>
<span class="c1"># Take into account that we run this on multiple cores</span>
@@ -1271,6 +1253,7 @@
<span class="c1"># print("thread {}: persistent_data_memaddr: ".format(self.process_ID), persistent_data_memaddr)</span>
<span class="c1"># Get results binary_c</span>
+ <span class="c1"># print("running: {}".format(binary_cmdline_string))</span>
<span class="n">out</span> <span class="o">=</span> <span class="n">_binary_c_bindings</span><span class="o">.</span><span class="n">run_system</span><span class="p">(</span>
<span class="n">argstring</span><span class="o">=</span><span class="n">binary_cmdline_string</span><span class="p">,</span>
<span class="n">custom_logging_func_memaddr</span><span class="o">=</span><span class="bp">self</span><span class="o">.</span><span class="n">grid_options</span><span class="p">[</span>
@@ -1563,11 +1546,6 @@
<span class="n">ensemble_json</span><span class="p">[</span><span class="s2">"ensemble"</span><span class="p">]</span> <span class="o">=</span> <span class="n">extract_ensemble_json_from_string</span><span class="p">(</span>
<span class="n">ensemble_raw_output</span>
<span class="p">)</span> <span class="c1"># Load this into a dict so that we can combine it later</span>
-
- <span class="c1"># Extra ensemble result manipulation:</span>
- <span class="c1"># We need to reformat and multiply by a factor</span>
- <span class="n">ensemble_json</span><span class="p">[</span><span class="s2">"ensemble"</span><span class="p">]</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">format_ensemble_results</span><span class="p">(</span><span class="n">ensemble_json</span><span class="p">[</span><span class="s2">"ensemble"</span><span class="p">])</span>
- <span class="n">gc</span><span class="o">.</span><span class="n">collect</span><span class="p">()</span>
<span class="k">else</span><span class="p">:</span>
<span class="c1"># If we do not allow this, automatically we will export this to the data_dir, in</span>
<span class="c1"># some formatted way</span>
@@ -1578,9 +1556,11 @@
<span class="p">),</span>
<span class="p">)</span>
+ <span class="c1"># TODO: consider writing this in a formatted structure</span>
<span class="c1"># Write to file</span>
<span class="k">with</span> <span class="nb">open</span><span class="p">(</span><span class="n">output_file</span><span class="p">,</span> <span class="s2">"w"</span><span class="p">)</span> <span class="k">as</span> <span class="n">f</span><span class="p">:</span>
<span class="n">f</span><span class="o">.</span><span class="n">write</span><span class="p">(</span><span class="n">ensemble_raw_output</span><span class="p">)</span>
+ <span class="c1"># f.write(json.dumps(self.format_ensemble_results(ensemble_output)))</span>
<span class="nb">print</span><span class="p">(</span>
<span class="s2">"Thread </span><span class="si">{}</span><span class="s2">: Wrote ensemble results directly to file: </span><span class="si">{}</span><span class="s2">"</span><span class="o">.</span><span class="n">format</span><span class="p">(</span>
@@ -2094,34 +2074,40 @@
<span class="c1"># TODO: make sure this works</span>
<span class="c1"># Adding for loop structure</span>
- <span class="n">code_string</span> <span class="o">+=</span> <span class="p">(</span>
- <span class="n">indent</span> <span class="o">*</span> <span class="n">depth</span>
- <span class="o">+</span> <span class="s2">"for </span><span class="si">{}</span><span class="s2"> in sampled_values_</span><span class="si">{}</span><span class="s2">:"</span><span class="o">.</span><span class="n">format</span><span class="p">(</span>
- <span class="n">grid_variable</span><span class="p">[</span><span class="s2">"name"</span><span class="p">],</span> <span class="n">grid_variable</span><span class="p">[</span><span class="s2">"name"</span><span class="p">]</span>
- <span class="p">)</span>
- <span class="o">+</span> <span class="s2">"</span><span class="se">\n</span><span class="s2">"</span>
- <span class="p">)</span>
-
<span class="c1"># code_string += (</span>
<span class="c1"># indent * depth</span>
- <span class="c1"># + "for {}_sample_number in range({}):".format(</span>
- <span class="c1"># grid_variable["name"], grid_variable["resolution"]</span>
+ <span class="c1"># + "for {} in sampled_values_{}:".format(</span>
+ <span class="c1"># grid_variable["name"], grid_variable["name"]</span>
<span class="c1"># )</span>
<span class="c1"># + "\n"</span>
<span class="c1"># )</span>
- <span class="c1"># code_string += (</span>
- <span class="c1"># indent * (depth+1)</span>
- <span class="c1"># + "{} = sampled_values_{}[0] + ((sampled_values_{}[-1]-sampled_values_{}[0])/{}) * {}_sample_number".format(</span>
- <span class="c1"># grid_variable["name"], grid_variable["name"], grid_variable["name"], grid_variable["name"], grid_variable["resolution"], grid_variable["name"]</span>
- <span class="c1"># )</span>
- <span class="c1"># + "\n"</span>
- <span class="c1"># )</span>
-
-
-
-
-
+ <span class="n">code_string</span> <span class="o">+=</span> <span class="p">(</span>
+ <span class="n">indent</span> <span class="o">*</span> <span class="n">depth</span>
+ <span class="o">+</span> <span class="s2">"for </span><span class="si">{}</span><span class="s2">_sample_number in range(</span><span class="si">{}</span><span class="s2">):"</span><span class="o">.</span><span class="n">format</span><span class="p">(</span>
+ <span class="n">grid_variable</span><span class="p">[</span><span class="s2">"name"</span><span class="p">],</span> <span class="n">grid_variable</span><span class="p">[</span><span class="s2">"resolution"</span><span class="p">]</span>
+ <span class="p">)</span>
+ <span class="o">+</span> <span class="s2">"</span><span class="se">\n</span><span class="s2">"</span>
+ <span class="p">)</span>
+ <span class="k">if</span> <span class="n">grid_variable</span><span class="p">[</span><span class="s1">'gridtype'</span><span class="p">]</span> <span class="o">==</span> <span class="s1">'edge'</span><span class="p">:</span>
+ <span class="n">code_string</span> <span class="o">+=</span> <span class="p">(</span>
+ <span class="n">indent</span> <span class="o">*</span> <span class="p">(</span><span class="n">depth</span><span class="o">+</span><span class="mi">1</span><span class="p">)</span>
+ <span class="o">+</span> <span class="s2">"</span><span class="si">{}</span><span class="s2"> = sampled_values_</span><span class="si">{}</span><span class="s2">[0] + (sampled_values_</span><span class="si">{}</span><span class="s2">[1]-sampled_values_</span><span class="si">{}</span><span class="s2">[0]) * </span><span class="si">{}</span><span class="s2">_sample_number"</span><span class="o">.</span><span class="n">format</span><span class="p">(</span>
+ <span class="n">grid_variable</span><span class="p">[</span><span class="s2">"name"</span><span class="p">],</span> <span class="n">grid_variable</span><span class="p">[</span><span class="s2">"name"</span><span class="p">],</span> <span class="n">grid_variable</span><span class="p">[</span><span class="s2">"name"</span><span class="p">],</span> <span class="n">grid_variable</span><span class="p">[</span><span class="s2">"name"</span><span class="p">],</span> <span class="n">grid_variable</span><span class="p">[</span><span class="s2">"name"</span><span class="p">]</span>
+ <span class="p">)</span>
+ <span class="o">+</span> <span class="s2">"</span><span class="se">\n</span><span class="s2">"</span>
+ <span class="p">)</span>
+ <span class="k">elif</span> <span class="n">grid_variable</span><span class="p">[</span><span class="s1">'gridtype'</span><span class="p">]</span> <span class="o">==</span> <span class="s1">'centred'</span><span class="p">:</span>
+ <span class="n">code_string</span> <span class="o">+=</span> <span class="p">(</span>
+ <span class="n">indent</span> <span class="o">*</span> <span class="p">(</span><span class="n">depth</span><span class="o">+</span><span class="mi">1</span><span class="p">)</span>
+ <span class="o">+</span> <span class="s2">"</span><span class="si">{}</span><span class="s2"> = sampled_values_</span><span class="si">{}</span><span class="s2">[0] + 0.5 * (sampled_values_</span><span class="si">{}</span><span class="s2">[1]-sampled_values_</span><span class="si">{}</span><span class="s2">[0]) + (sampled_values_</span><span class="si">{}</span><span class="s2">[1]-sampled_values_</span><span class="si">{}</span><span class="s2">[0]) * </span><span class="si">{}</span><span class="s2">_sample_number"</span><span class="o">.</span><span class="n">format</span><span class="p">(</span>
+ <span class="n">grid_variable</span><span class="p">[</span><span class="s2">"name"</span><span class="p">],</span> <span class="n">grid_variable</span><span class="p">[</span><span class="s2">"name"</span><span class="p">],</span> <span class="n">grid_variable</span><span class="p">[</span><span class="s2">"name"</span><span class="p">],</span> <span class="n">grid_variable</span><span class="p">[</span><span class="s2">"name"</span><span class="p">],</span> <span class="n">grid_variable</span><span class="p">[</span><span class="s2">"name"</span><span class="p">],</span> <span class="n">grid_variable</span><span class="p">[</span><span class="s2">"name"</span><span class="p">],</span> <span class="n">grid_variable</span><span class="p">[</span><span class="s2">"name"</span><span class="p">]</span>
+ <span class="p">)</span>
+ <span class="o">+</span> <span class="s2">"</span><span class="se">\n</span><span class="s2">"</span>
+ <span class="p">)</span>
+ <span class="k">else</span><span class="p">:</span>
+ <span class="n">msg</span> <span class="o">=</span> <span class="s2">"Unknown gridtype value. PLease choose a different one"</span>
+ <span class="k">raise</span> <span class="ne">ValueError</span><span class="p">(</span><span class="n">msg</span><span class="p">)</span>
<span class="c1">#################################################################################</span>
<span class="c1"># Check condition and generate for loop</span>
@@ -3746,7 +3732,7 @@
<span class="n">parameter_name</span><span class="o">=</span><span class="s2">"multiplicity"</span><span class="p">,</span>
<span class="n">longname</span><span class="o">=</span><span class="s2">"multiplicity"</span><span class="p">,</span>
<span class="n">valuerange</span><span class="o">=</span><span class="p">[</span><span class="mi">1</span><span class="p">,</span> <span class="n">max_multiplicity</span><span class="p">],</span>
- <span class="n">resolution</span><span class="o">=</span><span class="mi">1</span><span class="p">,</span>
+ <span class="n">resolution</span><span class="o">=</span><span class="mi">4</span><span class="p">,</span>
<span class="n">spacingfunc</span><span class="o">=</span><span class="s2">"range(1, 5)"</span><span class="p">,</span>
<span class="n">precode</span><span class="o">=</span><span class="s1">'self.grid_options["multiplicity"] = multiplicity; self.bse_options["multiplicity"] = multiplicity; options=</span><span class="si">{}</span><span class="s1">'</span><span class="o">.</span><span class="n">format</span><span class="p">(</span>
<span class="bp">self</span><span class="o">.</span><span class="n">grid_options</span><span class="p">[</span><span class="s1">'m&s_options'</span><span class="p">]</span>
@@ -4239,9 +4225,9 @@
provided by <a href="https://readthedocs.org">Read the Docs</a>.
<br><br>
-Generated on binarycpython git branch: development_version/2.1.7 git revision b3e29831acaa0f53ec69dc9f97f9d49b48d0c6c9 url: <a href="https://gitlab.eps.surrey.ac.uk/ri0005/binary_c-python/-/tree/development_version/2.1.7">git url</a>.
+Generated on binarycpython git branch: master git revision cac51a6dc71daeeb943b70d5598350ab43901299 url: <a href="https://gitlab.eps.surrey.ac.uk/ri0005/binary_c-python/-/tree/master">git url</a>.
<br><br>
-Using binary_c with bit branch branch_david: git revision: "6101:20210807:c5232be5c" url: <a href="https://gitlab.eps.surrey.ac.uk/ri0005/binary_c/-/tree/branch_david">git url</a>.
+Using binary_c with bit branch branch_david: git revision: "6162:20210825:093caf0e9" url: <a href="https://gitlab.eps.surrey.ac.uk/ri0005/binary_c/-/tree/branch_david">git url</a>.
diff --git a/docs/build/html/_modules/binarycpython/utils/grid_options_defaults.html b/docs/build/html/_modules/binarycpython/utils/grid_options_defaults.html
index 035bea23dffa0909ec265193cb819165e0c0a4fc..e0fdf688e80d830f14294c861ce8584003245c68 100644
--- a/docs/build/html/_modules/binarycpython/utils/grid_options_defaults.html
+++ b/docs/build/html/_modules/binarycpython/utils/grid_options_defaults.html
@@ -1007,9 +1007,9 @@
provided by <a href="https://readthedocs.org">Read the Docs</a>.
<br><br>
-Generated on binarycpython git branch: development_version/2.1.7 git revision b3e29831acaa0f53ec69dc9f97f9d49b48d0c6c9 url: <a href="https://gitlab.eps.surrey.ac.uk/ri0005/binary_c-python/-/tree/development_version/2.1.7">git url</a>.
+Generated on binarycpython git branch: master git revision cac51a6dc71daeeb943b70d5598350ab43901299 url: <a href="https://gitlab.eps.surrey.ac.uk/ri0005/binary_c-python/-/tree/master">git url</a>.
<br><br>
-Using binary_c with bit branch branch_david: git revision: "6101:20210807:c5232be5c" url: <a href="https://gitlab.eps.surrey.ac.uk/ri0005/binary_c/-/tree/branch_david">git url</a>.
+Using binary_c with bit branch branch_david: git revision: "6162:20210825:093caf0e9" url: <a href="https://gitlab.eps.surrey.ac.uk/ri0005/binary_c/-/tree/branch_david">git url</a>.
diff --git a/docs/build/html/_modules/binarycpython/utils/plot_functions.html b/docs/build/html/_modules/binarycpython/utils/plot_functions.html
index ba2301c60c962ec6cb16ae1d27371f0e0f2b7ab2..64e1f27cc49100aeb8899ec46a0683297a049887 100644
--- a/docs/build/html/_modules/binarycpython/utils/plot_functions.html
+++ b/docs/build/html/_modules/binarycpython/utils/plot_functions.html
@@ -829,9 +829,9 @@
provided by <a href="https://readthedocs.org">Read the Docs</a>.
<br><br>
-Generated on binarycpython git branch: development_version/2.1.7 git revision b3e29831acaa0f53ec69dc9f97f9d49b48d0c6c9 url: <a href="https://gitlab.eps.surrey.ac.uk/ri0005/binary_c-python/-/tree/development_version/2.1.7">git url</a>.
+Generated on binarycpython git branch: master git revision cac51a6dc71daeeb943b70d5598350ab43901299 url: <a href="https://gitlab.eps.surrey.ac.uk/ri0005/binary_c-python/-/tree/master">git url</a>.
<br><br>
-Using binary_c with bit branch branch_david: git revision: "6101:20210807:c5232be5c" url: <a href="https://gitlab.eps.surrey.ac.uk/ri0005/binary_c/-/tree/branch_david">git url</a>.
+Using binary_c with bit branch branch_david: git revision: "6162:20210825:093caf0e9" url: <a href="https://gitlab.eps.surrey.ac.uk/ri0005/binary_c/-/tree/branch_david">git url</a>.
diff --git a/docs/build/html/_modules/binarycpython/utils/run_system_wrapper.html b/docs/build/html/_modules/binarycpython/utils/run_system_wrapper.html
index 535ffdf429c3e87e70d05355b37c237e01393c70..70d649d6a6419e761f7ef63b8254d2dd9cb7f4ff 100644
--- a/docs/build/html/_modules/binarycpython/utils/run_system_wrapper.html
+++ b/docs/build/html/_modules/binarycpython/utils/run_system_wrapper.html
@@ -209,6 +209,7 @@
<span class="c1"># Load available arg keywords</span>
<span class="n">available_binary_c_arg_keywords</span> <span class="o">=</span> <span class="n">get_arg_keys</span><span class="p">()</span>
+ <span class="n">special_keywords</span> <span class="o">=</span> <span class="p">[</span><span class="n">el</span> <span class="k">for</span> <span class="n">el</span> <span class="ow">in</span> <span class="nb">list</span><span class="p">(</span><span class="n">available_binary_c_arg_keywords</span><span class="p">)</span> <span class="k">if</span> <span class="n">el</span><span class="o">.</span><span class="n">endswith</span><span class="p">(</span><span class="s2">"</span><span class="si">%d</span><span class="s2">"</span><span class="p">)]</span>
<span class="n">other_keywords</span> <span class="o">=</span> <span class="p">[</span><span class="s2">"custom_logging_code"</span><span class="p">,</span> <span class="s2">"log_filename"</span><span class="p">,</span> <span class="s2">"parse_function"</span><span class="p">]</span>
@@ -224,6 +225,16 @@
<span class="k">if</span> <span class="n">key</span> <span class="ow">in</span> <span class="n">available_binary_c_arg_keywords</span><span class="p">:</span>
<span class="n">binary_c_args</span><span class="p">[</span><span class="n">key</span><span class="p">]</span> <span class="o">=</span> <span class="n">kwargs</span><span class="p">[</span><span class="n">key</span><span class="p">]</span>
+ <span class="k">elif</span> <span class="nb">any</span><span class="p">(</span>
+ <span class="p">[</span>
+ <span class="kc">True</span>
+ <span class="k">if</span> <span class="p">(</span><span class="n">key</span><span class="o">.</span><span class="n">startswith</span><span class="p">(</span><span class="n">param</span><span class="p">[:</span><span class="o">-</span><span class="mi">2</span><span class="p">])</span> <span class="ow">and</span> <span class="nb">len</span><span class="p">(</span><span class="n">param</span><span class="p">[:</span><span class="o">-</span><span class="mi">2</span><span class="p">])</span> <span class="o"><</span> <span class="nb">len</span><span class="p">(</span><span class="n">key</span><span class="p">))</span>
+ <span class="k">else</span> <span class="kc">False</span>
+ <span class="k">for</span> <span class="n">param</span> <span class="ow">in</span> <span class="n">special_keywords</span>
+ <span class="p">]</span>
+ <span class="p">):</span>
+ <span class="n">binary_c_args</span><span class="p">[</span><span class="n">key</span><span class="p">]</span> <span class="o">=</span> <span class="n">kwargs</span><span class="p">[</span><span class="n">key</span><span class="p">]</span>
+
<span class="c1"># Notify user when this key wont be used</span>
<span class="k">else</span><span class="p">:</span>
<span class="k">if</span> <span class="ow">not</span> <span class="n">key</span> <span class="ow">in</span> <span class="n">other_keywords</span><span class="p">:</span>
@@ -287,9 +298,9 @@
provided by <a href="https://readthedocs.org">Read the Docs</a>.
<br><br>
-Generated on binarycpython git branch: development_version/2.1.7 git revision b3e29831acaa0f53ec69dc9f97f9d49b48d0c6c9 url: <a href="https://gitlab.eps.surrey.ac.uk/ri0005/binary_c-python/-/tree/development_version/2.1.7">git url</a>.
+Generated on binarycpython git branch: master git revision cac51a6dc71daeeb943b70d5598350ab43901299 url: <a href="https://gitlab.eps.surrey.ac.uk/ri0005/binary_c-python/-/tree/master">git url</a>.
<br><br>
-Using binary_c with bit branch branch_david: git revision: "6101:20210807:c5232be5c" url: <a href="https://gitlab.eps.surrey.ac.uk/ri0005/binary_c/-/tree/branch_david">git url</a>.
+Using binary_c with bit branch branch_david: git revision: "6162:20210825:093caf0e9" url: <a href="https://gitlab.eps.surrey.ac.uk/ri0005/binary_c/-/tree/branch_david">git url</a>.
diff --git a/docs/build/html/_modules/binarycpython/utils/spacing_functions.html b/docs/build/html/_modules/binarycpython/utils/spacing_functions.html
index f24e0dd9410dc8ca169867b4f1c36bcd396c3346..6fa1aeaec36172e82be9aed794f34c5662439dbf 100644
--- a/docs/build/html/_modules/binarycpython/utils/spacing_functions.html
+++ b/docs/build/html/_modules/binarycpython/utils/spacing_functions.html
@@ -179,10 +179,10 @@
<span class="sd"> steps: amount of segments between min_bound and max_bound</span>
<span class="sd"> Returns:</span>
-<span class="sd"> np.linspace(min_bound, max_bound, steps)</span>
+<span class="sd"> np.linspace(min_bound, max_bound, steps+1)</span>
<span class="sd"> """</span>
- <span class="k">return</span> <span class="n">np</span><span class="o">.</span><span class="n">linspace</span><span class="p">(</span><span class="n">min_bound</span><span class="p">,</span> <span class="n">max_bound</span><span class="p">,</span> <span class="n">steps</span><span class="p">)</span></div>
+ <span class="k">return</span> <span class="n">np</span><span class="o">.</span><span class="n">linspace</span><span class="p">(</span><span class="n">min_bound</span><span class="p">,</span> <span class="n">max_bound</span><span class="p">,</span> <span class="n">steps</span><span class="o">+</span><span class="mi">1</span><span class="p">)</span></div>
</pre></div>
</div>
@@ -209,9 +209,9 @@
provided by <a href="https://readthedocs.org">Read the Docs</a>.
<br><br>
-Generated on binarycpython git branch: development_version/2.1.7 git revision b3e29831acaa0f53ec69dc9f97f9d49b48d0c6c9 url: <a href="https://gitlab.eps.surrey.ac.uk/ri0005/binary_c-python/-/tree/development_version/2.1.7">git url</a>.
+Generated on binarycpython git branch: master git revision cac51a6dc71daeeb943b70d5598350ab43901299 url: <a href="https://gitlab.eps.surrey.ac.uk/ri0005/binary_c-python/-/tree/master">git url</a>.
<br><br>
-Using binary_c with bit branch branch_david: git revision: "6101:20210807:c5232be5c" url: <a href="https://gitlab.eps.surrey.ac.uk/ri0005/binary_c/-/tree/branch_david">git url</a>.
+Using binary_c with bit branch branch_david: git revision: "6162:20210825:093caf0e9" url: <a href="https://gitlab.eps.surrey.ac.uk/ri0005/binary_c/-/tree/branch_david">git url</a>.
diff --git a/docs/build/html/_modules/binarycpython/utils/useful_funcs.html b/docs/build/html/_modules/binarycpython/utils/useful_funcs.html
index 4257a86e64ac7024e36012998907a176e7abda12..8a34e232604ac478da7309fb5479c4ed50d77459 100644
--- a/docs/build/html/_modules/binarycpython/utils/useful_funcs.html
+++ b/docs/build/html/_modules/binarycpython/utils/useful_funcs.html
@@ -566,9 +566,9 @@
provided by <a href="https://readthedocs.org">Read the Docs</a>.
<br><br>
-Generated on binarycpython git branch: development_version/2.1.7 git revision b3e29831acaa0f53ec69dc9f97f9d49b48d0c6c9 url: <a href="https://gitlab.eps.surrey.ac.uk/ri0005/binary_c-python/-/tree/development_version/2.1.7">git url</a>.
+Generated on binarycpython git branch: master git revision cac51a6dc71daeeb943b70d5598350ab43901299 url: <a href="https://gitlab.eps.surrey.ac.uk/ri0005/binary_c-python/-/tree/master">git url</a>.
<br><br>
-Using binary_c with bit branch branch_david: git revision: "6101:20210807:c5232be5c" url: <a href="https://gitlab.eps.surrey.ac.uk/ri0005/binary_c/-/tree/branch_david">git url</a>.
+Using binary_c with bit branch branch_david: git revision: "6162:20210825:093caf0e9" url: <a href="https://gitlab.eps.surrey.ac.uk/ri0005/binary_c/-/tree/branch_david">git url</a>.
diff --git a/docs/build/html/_modules/index.html b/docs/build/html/_modules/index.html
index 2ce40dd7fe1f5d07e03bfc32bc86ddc22a764481..5306f95eff8b15b92a9493147f00b5237bbb31cb 100644
--- a/docs/build/html/_modules/index.html
+++ b/docs/build/html/_modules/index.html
@@ -189,9 +189,9 @@
provided by <a href="https://readthedocs.org">Read the Docs</a>.
<br><br>
-Generated on binarycpython git branch: development_version/2.1.7 git revision b3e29831acaa0f53ec69dc9f97f9d49b48d0c6c9 url: <a href="https://gitlab.eps.surrey.ac.uk/ri0005/binary_c-python/-/tree/development_version/2.1.7">git url</a>.
+Generated on binarycpython git branch: master git revision cac51a6dc71daeeb943b70d5598350ab43901299 url: <a href="https://gitlab.eps.surrey.ac.uk/ri0005/binary_c-python/-/tree/master">git url</a>.
<br><br>
-Using binary_c with bit branch branch_david: git revision: "6101:20210807:c5232be5c" url: <a href="https://gitlab.eps.surrey.ac.uk/ri0005/binary_c/-/tree/branch_david">git url</a>.
+Using binary_c with bit branch branch_david: git revision: "6162:20210825:093caf0e9" url: <a href="https://gitlab.eps.surrey.ac.uk/ri0005/binary_c/-/tree/branch_david">git url</a>.
diff --git a/docs/build/html/_sources/binary_c_parameters.rst.txt b/docs/build/html/_sources/binary_c_parameters.rst.txt
index 96a16995f44edbe0c9af9b78993e06515eaadf1b..9d05193ac3eee376842356a9aea21ccba0d96899 100644
--- a/docs/build/html/_sources/binary_c_parameters.rst.txt
+++ b/docs/build/html/_sources/binary_c_parameters.rst.txt
@@ -4,7 +4,7 @@ The following chapter contains all the parameters that the current version of bi
This information was obtained by the following binary_c build:
- **binary_c git branch**: branch_david **binary_c git revision**: 6101:20210807:c5232be5c **Built on**: Aug 7 2021 17:32:06
+ **binary_c git branch**: branch_david **binary_c git revision**: 6162:20210825:093caf0e9 **Built on**: Aug 25 2021 18:02:39
Section: stars
@@ -300,6 +300,22 @@ Section: stars
| **Default value**: 0
| **Macros**: ['GB_WIND_REIMERS = 0', 'GB_WIND_SCHROEDER_CUNTZ_2005 = 1', 'GB_WIND_GOLDMAN_ETAL_2017 = 2', 'GB_WIND_BEASOR_ETAL_2020 = 3']
+| **Parameter**: postagbwind
+| **Description**: Apply special post-(A)GB prescription. Default is POSTAGB_WIND_USE_GIANT which means we just use whatever is prescribed on the giant branch. Other options include: POSTAGB_WIND_NONE = 1 (no wind on the post (A)GB), POSTAGB_WIND_KRTICKA2020 = 2 which uses Krticka, Kubát and Krticková (2020, A&A 635, A173).
+| **Parameter input type**: Integer
+| **Default value**: 0
+| **Macros**: ['POSTAGB_WIND_GIANT = 0', 'POSTAGB_WIND_NONE = 1', 'POSTAGB_WIND_KRTICKA2020 = 2']
+
+| **Parameter**: Teff_postAGB_min
+| **Description**: The minimum temperature for which we apply post-(A)GB winds. See also Teff_postAGB_max. (6000 K)
+| **Parameter input type**: Float
+| **Default value**: 6000
+
+| **Parameter**: Teff_postAGB_max
+| **Description**: The maximum temperature for which we apply post-(A)GB winds. See also Teff_postAGB_min. (120000 K)
+| **Parameter input type**: Float
+| **Default value**: 120000
+
| **Parameter**: mattsson_Orich_tpagbwind
| **Description**: Experimental: turns on Mattsson's TPAGB wind when the star is oxygen rich. Requires MATTSSON_MASS_LOSS.
| **Parameter input type**: Integer
@@ -398,6 +414,11 @@ Section: stars
| **Parameter input type**: Float
| **Default value**: 1
+| **Parameter**: Tout_Pringle_1992_multiplier
+| **Description**: Multiplier for the Tout & Pringle (1992) magnetic wind. (0.0)
+| **Parameter input type**: Float
+| **Default value**: 0
+
| **Parameter**: artificial_mass_accretion_rate%d
| **Description**: Constant mass accretion rate for star <n>.
| **Parameter input type**: Float(scanf)
@@ -442,10 +463,10 @@ Section: stars
| **Default value**: 1
| **Parameter**: BH_prescription
-| **Description**: Black hole mass prescrition: relates the mass of a newly formed black hole to its progenitor's (CO) core mass. 0=Hurley et al 2000/2002, 1=Belczynski (early 2000s).
+| **Description**: Black hole mass prescrition: relates the mass of a newly formed black hole to its progenitor's (CO) core mass. BH_HURLEY2002 = 0 = Hurley et al 2000/2002, BH_BELCZYNSKI = 1 = Belczynski (early 2000s), BH_SPERA2015 = Spera+ 2015, BH_FRYER12_DELAYED = 3 = Fryer et al. (2012) delayed prescription, BH_FRYER12_RAPID = 4 = Fryer et al. (2012) rapid prescription, BH_FRYER12_STARTRACK = 5 = Fryer et al. (2012) startrack prescription.
| **Parameter input type**: Integer
| **Default value**: 0
-| **Macros**: ['BH_HURLEY2002 = 0', 'BH_BELCZYNSKI = 1', 'BH_SPERA2015 = 2', 'BH_FRYER12_DELAYED = 3', 'BH_FRYER12_RAPID = 4']
+| **Macros**: ['BH_HURLEY2002 = 0', 'BH_BELCZYNSKI = 1', 'BH_SPERA2015 = 2', 'BH_FRYER12_DELAYED = 3', 'BH_FRYER12_RAPID = 4', 'BH_FRYER12_STARTRACK = 5']
| **Parameter**: PPISN_prescription
| **Description**: (Pulsational) Pair-Instability Supernova prescription: Relates initial helium core mass of star to whether the star undergoes PPISN or PISN. Requires PPISN flag to be True (see binary_c_parameters.h). 0=no ppisn, 1=Farmer et al 2019.
@@ -1105,6 +1126,16 @@ Section: stars
| **Parameter input type**: Float
| **Default value**: 600000
+| **Parameter**: colour%d
+| **Description**: Sets colour %d (0 to NUM_ANSI_COLOURS-1) to the extended ANSI set colour you choose (1-255, 0 means ignore). The colour numbers are defined in src/logging/ansi_colours.h
+| **Parameter input type**: Int(scanf)
+| **Default value**: NULL
+
+| **Parameter**: apply_Darwin_Radau_correction
+| **Description**: Apply Darwin-Radau correction to the moment of inertia to take rotation into account?
+| **Parameter input type**: True|False
+| **Default value**: False
+
Section: binary
---------------
@@ -2459,6 +2490,12 @@ Section: output
| **Default value**: /tmp/c_log.dat
| **Extra**:
+| **Parameter**: log_arrows
+| **Description**: Add arrows to the output log to show whether values are increasing or decreasing.
+| **Parameter input type**: True|False
+| **Default value**: False
+| **Extra**:
+
| **Parameter**: stopfile
| **Description**: File which, when it exists, will stop the current binary_c repeat run.
| **Parameter input type**: String
@@ -2572,6 +2609,12 @@ Section: input
| **Default value**: NULL
| **Extra**:
+| **Parameter**: MINT_fallback_to_test_data
+| **Description**: If TRUE, use the MINT test_data directory as a fallback when data is unavailable. (FALSE)
+| **Parameter input type**: True|False
+| **Default value**: NULL
+| **Extra**:
+
| **Parameter**: MINT_disable_grid_load_warnings
| **Description**: Use this to explicitly disable MINT's warnings when loading a grid with, e.g., missing or too much data.
| **Parameter input type**: True|False
@@ -2584,6 +2627,24 @@ Section: input
| **Default value**: NULL
| **Extra**:
+| **Parameter**: MINT_nshells
+| **Description**: Set the initial number of shells MINT uses in each star when doing nuclear burning. Note: remeshing can change this. If MINT_nshells is 0, shellular burning and other routines that require shells will not be available. (200)
+| **Parameter input type**: Integer
+| **Default value**: NULL
+| **Extra**:
+
+| **Parameter**: MINT_maximum_nshells
+| **Description**: Set the maximum number of shells MINT uses in each star when doing nuclear burning. Note that this will be limited to MINT_HARD_MAX_NSHELLS. (1000)
+| **Parameter input type**: Integer
+| **Default value**: NULL
+| **Extra**:
+
+| **Parameter**: MINT_minimum_nshells
+| **Description**: Set the minimum number of shells MINT uses in each star when doing nuclear burning. Note that this will be greater than or equal to MINT_HARD_MIN_NSHELLS, which is 0 by default. (0)
+| **Parameter input type**: Integer
+| **Default value**: NULL
+| **Extra**:
+
| **Parameter**: MINT_Kippenhahn_stellar_type
| **Description**: Stellar type selector for Kippenhahn plots. Set to -1 to ignore, otherwise the stellar type number for which Kippenhahn plot data should be output.
| **Parameter input type**: Integer
diff --git a/docs/build/html/_sources/notebook_individual_systems.ipynb.txt b/docs/build/html/_sources/notebook_individual_systems.ipynb.txt
index 19c2d29fbd316324eb39a361e897be2b835955e8..21d49016f3b2826d6f9d5ec87a1f6d8bb18df7af 100644
--- a/docs/build/html/_sources/notebook_individual_systems.ipynb.txt
+++ b/docs/build/html/_sources/notebook_individual_systems.ipynb.txt
@@ -28,6 +28,18 @@
{
"cell_type": "code",
"execution_count": 1,
+ "id": "e32dcdee",
+ "metadata": {},
+ "outputs": [],
+ "source": [
+ "import os\n",
+ "from binarycpython.utils.functions import temp_dir\n",
+ "TMP_DIR = temp_dir(\"notebooks\", \"notebook_individual_systems\")"
+ ]
+ },
+ {
+ "cell_type": "code",
+ "execution_count": 2,
"id": "425efed3-d8e3-432d-829e-41d8ebe05162",
"metadata": {},
"outputs": [],
@@ -38,7 +50,7 @@
},
{
"cell_type": "code",
- "execution_count": 2,
+ "execution_count": 3,
"id": "b2abab48-433d-4936-8434-14804c52c9f6",
"metadata": {},
"outputs": [
@@ -46,7 +58,7 @@
"name": "stdout",
"output_type": "stream",
"text": [
- "SINGLE_STAR_LIFETIME 1 12462\n",
+ "SINGLE_STAR_LIFETIME 1 12461.9\n",
"\n"
]
}
@@ -66,7 +78,7 @@
},
{
"cell_type": "code",
- "execution_count": 3,
+ "execution_count": 4,
"id": "029fc3f2-f09a-49af-a32b-248505738f2e",
"metadata": {},
"outputs": [
@@ -74,24 +86,25 @@
"name": "stdout",
"output_type": "stream",
"text": [
- " TIME M1 M2 K1 K2 SEP ECC R1/ROL1 R2/ROL2 TYPE RANDOM_SEED=67365 RANDOM_COUNT=0\n",
- " 0.0000 1.000 0.000 1 15 -1 -1.00 0.000 0.000 \"INITIAL \"\n",
- " 11003.1302 1.000 0.000 2 15 -1 -1.00 0.000 0.000 \"OFF_MS\"\n",
- " 11003.1302 1.000 0.000 2 15 -1 -1.00 0.000 0.000 \"TYPE_CHNGE\"\n",
- " 11582.2424 1.000 0.000 3 15 -1 -1.00 0.000 0.000 \"TYPE_CHNGE\"\n",
- " 12325.1085 0.817 0.000 4 15 -1 -1.00 0.000 0.000 \"TYPE_CHNGE\"\n",
- " 12457.1300 0.783 0.000 5 15 -1 -1.00 0.000 0.000 \"TYPE_CHNGE\"\n",
- " 12460.8955 0.774 0.000 6 15 -1 -1.00 0.000 0.000 \"TYPE_CHNGE\"\n",
- " 12460.8955 0.774 0.000 6 15 -1 -1.00 0.000 0.000 \"shrinkAGB\"\n",
- " 12461.9514 0.523 0.000 11 15 -1 -1.00 0.000 0.000 \"TYPE_CHNGE\"\n",
- " 15000.0000 0.523 0.000 11 15 -1 -1.00 0.000 0.000 \"MAX_TIME\"\n",
+ " TIME M1 M2 K1 K2 SEP PER ECC R1/ROL1 R2/ROL2 TYPE RANDOM_SEED=17089 RANDOM_COUNT=0\n",
+ " 0.0000 1.000 0.000 1 15 -1 -1 -1.00 0.000 0.000 \"INITIAL \"\n",
+ " 11003.1302 1.000 0.000 2 15 -1 -1 -1.00 0.000 0.000 \"OFF_MS\"\n",
+ " 11003.1302 1.000 0.000 2 15 -1 -1 -1.00 0.000 0.000 \"TYPE_CHNGE\"\n",
+ " 11582.2424 1.000 0.000 3 15 -1 -1 -1.00 0.000 0.000 \"TYPE_CHNGE\"\n",
+ " 12325.1085 0.817 0.000 4 15 -1 -1 -1.00 0.000 0.000 \"TYPE_CHNGE\"\n",
+ " 12457.1301 0.783 0.000 5 15 -1 -1 -1.00 0.000 0.000 \"TYPE_CHNGE\"\n",
+ " 12460.9983 0.716 0.000 6 15 -1 -1 -1.00 0.000 0.000 \"TYPE_CHNGE\"\n",
+ " 12460.9983 0.716 0.000 6 15 -1 -1 -1.00 0.000 0.000 \"shrinkAGB\"\n",
+ " 12461.9458 0.518 0.000 11 15 -1 -1 -1.00 0.000 0.000 \"TYPE_CHNGE\"\n",
+ " 15000.0000 0.518 0.000 11 15 -1 -1 -1.00 0.000 0.000 \"MAX_TIME\"\n",
"\n"
]
}
],
"source": [
- "output = run_system(M_1=1, log_filename='/tmp/test_logfile.txt')\n",
- "with open('/tmp/test_logfile.txt', 'r') as f:\n",
+ "log_filename = os.path.join(TMP_DIR, 'test_logfile.txt')\n",
+ "output = run_system(M_1=1, log_filename=log_filename, api_log_filename_prefix=TMP_DIR)\n",
+ "with open(log_filename, 'r') as f:\n",
" print(f.read())"
]
},
@@ -105,7 +118,7 @@
},
{
"cell_type": "code",
- "execution_count": 6,
+ "execution_count": 5,
"id": "e6a23b55-ca42-440d-83ac-e76a24a83a67",
"metadata": {
"tags": []
@@ -115,7 +128,10 @@
"name": "stdout",
"output_type": "stream",
"text": [
- "['EXAMPLE_MASSLOSS 0.000000000000e+00 1 1 1', 'EXAMPLE_MASSLOSS 0.000000000000e+00 1 1 1', 'EXAMPLE_MASSLOSS 1.000000000000e-06 1 1 1', 'EXAMPLE_MASSLOSS 2.000000000000e-06 1 1 1']\n"
+ "EXAMPLE_MASSLOSS 0.000000000000e+00 1 1 1\n",
+ "EXAMPLE_MASSLOSS 0.000000000000e+00 1 1 1\n",
+ "EXAMPLE_MASSLOSS 1.000000000000e-06 1 1 1\n",
+ "EXAMPLE_MASSLOSS 2.000000000000e-06 1 1 1\n"
]
}
],
@@ -137,8 +153,8 @@
"# Generate entire shared lib code around logging lines\n",
"custom_logging_code = binary_c_log_code(custom_logging_print_statement)\n",
"\n",
- "output = run_system(M_1=1, custom_logging_code=custom_logging_code)\n",
- "print(output.splitlines()[:4])"
+ "output = run_system(M_1=1, custom_logging_code=custom_logging_code, api_log_filename_prefix=TMP_DIR)\n",
+ "print('\\n'.join(output.splitlines()[:4]))"
]
},
{
@@ -151,7 +167,7 @@
},
{
"cell_type": "code",
- "execution_count": 7,
+ "execution_count": 6,
"id": "3822721f-217a-495b-962e-d57137b9e290",
"metadata": {},
"outputs": [
@@ -201,7 +217,7 @@
},
{
"cell_type": "code",
- "execution_count": 8,
+ "execution_count": 7,
"id": "654a07ed-2a88-46ff-9da0-b7759580f9f3",
"metadata": {},
"outputs": [
@@ -216,13 +232,13 @@
"4 2e-06 1 1 1\n",
"5 3e-06 1 1 1\n",
"... ... ... ... ...\n",
- "1612 12461.8 0.577754 1 6\n",
- "1613 12462 0.522806 1 11\n",
- "1614 13462 0.522806 1 11\n",
- "1615 14462 0.522806 1 11\n",
- "1616 15000 0.522806 1 11\n",
+ "1617 12461.8 0.546683 1 6\n",
+ "1618 12461.9 0.517749 1 11\n",
+ "1619 13461.9 0.517749 1 11\n",
+ "1620 14461.9 0.517749 1 11\n",
+ "1621 15000 0.517749 1 11\n",
"\n",
- "[1616 rows x 4 columns]\n"
+ "[1621 rows x 4 columns]\n"
]
}
],
@@ -252,7 +268,7 @@
},
{
"cell_type": "code",
- "execution_count": 9,
+ "execution_count": 8,
"id": "4a98ffca-1b72-4bb8-8df1-3bf3187d882f",
"metadata": {},
"outputs": [],
@@ -271,7 +287,7 @@
},
{
"cell_type": "code",
- "execution_count": 10,
+ "execution_count": 9,
"id": "bff1cc2e-6b32-4ba0-879f-879ffbabd223",
"metadata": {},
"outputs": [
@@ -279,11 +295,12 @@
"name": "stdout",
"output_type": "stream",
"text": [
+ "adding: api_log_filename_prefix=/tmp/binary_c_python/notebooks/notebook_individual_systems to BSE_options\n",
"adding: M_1=10 to BSE_options\n",
"Creating and loading custom logging functionality\n",
- "Running binary_c M_1 10\n",
+ "Running binary_c M_1 10 api_log_filename_prefix /tmp/binary_c_python/notebooks/notebook_individual_systems\n",
"Cleaning up the custom logging stuff. type: single\n",
- "SINGLE_STAR_LIFETIME 10 27.7358\n",
+ "SINGLE_STAR_LIFETIME 10 28.4838\n",
"\n"
]
}
@@ -294,7 +311,8 @@
"\n",
"# Set some parameters\n",
"example_pop.set(\n",
- " verbosity=1\n",
+ " verbosity=1,\n",
+ " api_log_filename_prefix=TMP_DIR\n",
")\n",
"example_pop.set(\n",
" M_1=10\n",
@@ -315,7 +333,7 @@
},
{
"cell_type": "code",
- "execution_count": 13,
+ "execution_count": 10,
"id": "dd748bab-b57e-4129-8350-9ea11fa179d0",
"metadata": {
"scrolled": true,
@@ -338,10 +356,13 @@
");\n",
" to grid_options\n",
"Creating and loading custom logging functionality\n",
- "Running binary_c M_1 10\n",
+ "Running binary_c M_1 10 api_log_filename_prefix /tmp/binary_c_python/notebooks/notebook_individual_systems\n",
"Cleaning up the custom logging stuff. type: single\n",
- "Removed /tmp/binary_c_python/custom_logging/libcustom_logging_eac2dfc438a14e5a9f5be98b1b6b4294.so\n",
- "['EXAMPLE_MASSLOSS 0.000000000000e+00 10 0 10 1', 'EXAMPLE_MASSLOSS 0.000000000000e+00 10 10 10 1', 'EXAMPLE_MASSLOSS 1.000000000000e-06 10 10 10 1', 'EXAMPLE_MASSLOSS 2.000000000000e-06 10 10 10 1']\n"
+ "Removed /tmp/binary_c_python/custom_logging/libcustom_logging_8967553693ac4e11a49c42d4eef773e8.so\n",
+ "EXAMPLE_MASSLOSS 0.000000000000e+00 10 0 10 1\n",
+ "EXAMPLE_MASSLOSS 0.000000000000e+00 10 10 10 1\n",
+ "EXAMPLE_MASSLOSS 1.000000000000e-06 10 10 10 1\n",
+ "EXAMPLE_MASSLOSS 2.000000000000e-06 10 10 10 1\n"
]
}
],
@@ -362,7 +383,7 @@
"\n",
"# get output and print\n",
"output = example_pop.evolve_single()\n",
- "print(output.splitlines()[:4])"
+ "print('\\n'.join(output.splitlines()[:4]))"
]
},
{
@@ -377,7 +398,7 @@
},
{
"cell_type": "code",
- "execution_count": 14,
+ "execution_count": 11,
"id": "fec39154-cce6-438c-8c2c-509d76b00f34",
"metadata": {},
"outputs": [],
@@ -428,7 +449,7 @@
},
{
"cell_type": "code",
- "execution_count": 15,
+ "execution_count": 12,
"id": "57347512-fd4a-434b-b13c-5e6dbd3ac415",
"metadata": {
"scrolled": true,
@@ -439,12 +460,13 @@
"name": "stdout",
"output_type": "stream",
"text": [
- "adding: parse_function=<function object_parse_function at 0x7f9265091598> to grid_options\n",
- "<<<< Warning: Key does not match previously known parameter: adding: output_dir=/tmp/ to custom_options >>>>\n",
+ "adding: parse_function=<function object_parse_function at 0x7fb4d41ebbf8> to grid_options\n",
+ "<<<< Warning: Key does not match previously known parameter: adding: output_dir=/tmp/binary_c_python/notebooks/notebook_individual_systems to custom_options >>>>\n",
+ "adding: api_log_filename_prefix=/tmp/binary_c_python/notebooks/notebook_individual_systems to BSE_options\n",
"Creating and loading custom logging functionality\n",
- "Running binary_c M_1 10\n",
+ "Running binary_c M_1 10 api_log_filename_prefix /tmp/binary_c_python/notebooks/notebook_individual_systems\n",
"Cleaning up the custom logging stuff. type: single\n",
- "Removed /tmp/binary_c_python/custom_logging/libcustom_logging_e9c2bec7f15541eb847fc6013e48e7ed.so\n",
+ "Removed /tmp/binary_c_python/custom_logging/libcustom_logging_5d7779e8190e4b79b10c7e6a44cb0e7e.so\n",
"[['time', 'mass', 'initial_mass', 'stellar_type'], [0.0, 10.0, 0.0, 10.0, 1.0], [0.0, 10.0, 10.0, 10.0, 1.0], [1e-06, 10.0, 10.0, 10.0, 1.0]]\n",
"dict_keys(['time', 'mass', 'initial_mass', 'stellar_type'])\n"
]
@@ -453,7 +475,8 @@
"source": [
"example_pop.set(\n",
" parse_function=object_parse_function,\n",
- " output_dir='/tmp/'\n",
+ " output_dir=TMP_DIR,\n",
+ " api_log_filename_prefix=TMP_DIR\n",
")\n",
"output = example_pop.evolve_single()\n",
"print(output[:4])\n",
@@ -488,7 +511,7 @@
},
{
"cell_type": "code",
- "execution_count": 16,
+ "execution_count": 13,
"id": "ec48125c-6bf5-48f4-9357-8261800b5d8b",
"metadata": {},
"outputs": [
@@ -496,7 +519,7 @@
"name": "stdout",
"output_type": "stream",
"text": [
- "SINGLE_STAR_LIFETIME 15 14.2383\n",
+ "SINGLE_STAR_LIFETIME 15 14.9947\n",
"\n"
]
}
@@ -510,10 +533,11 @@
"eccentricity = 0.0\n",
"metallicity = 0.02\n",
"max_evolution_time = 15000 # Myr. You need to include this argument.\n",
+ "api_log_filename_prefix = TMP_DIR\n",
"\n",
"# Here we set up the argument string that is passed to the bindings\n",
"argstring = \"\"\"\n",
- "binary_c M_1 {M_1} M_2 {M_2} separation {separation} orbital_period {orbital_period} eccentricity {eccentricity} metallicity {metallicity} max_evolution_time {max_evolution_time}\n",
+ "binary_c M_1 {M_1} M_2 {M_2} separation {separation} orbital_period {orbital_period} eccentricity {eccentricity} metallicity {metallicity} max_evolution_time {max_evolution_time} api_log_filename_prefix {api_log_filename_prefix}\n",
"\"\"\".format(\n",
" M_1=M_1,\n",
" M_2=M_2,\n",
@@ -522,6 +546,7 @@
" eccentricity=eccentricity,\n",
" metallicity=metallicity,\n",
" max_evolution_time=max_evolution_time,\n",
+ " api_log_filename_prefix=TMP_DIR\n",
").strip()\n",
"\n",
"from binarycpython import _binary_c_bindings\n",
diff --git a/docs/build/html/_sources/notebook_population.ipynb.txt b/docs/build/html/_sources/notebook_population.ipynb.txt
index 56f3b153c23064e82863f188906d50243e795715..b6a37baa8d90a2f36c0fd19311548ed49e77f173 100644
--- a/docs/build/html/_sources/notebook_population.ipynb.txt
+++ b/docs/build/html/_sources/notebook_population.ipynb.txt
@@ -3,7 +3,9 @@
{
"cell_type": "markdown",
"id": "bbbaafbb-fd7d-4b73-a970-93506ba35d71",
- "metadata": {},
+ "metadata": {
+ "tags": []
+ },
"source": [
"# Running populations with binarycpython\n",
"This notebook will show you how to evolve a population of stars\n",
@@ -27,15 +29,6 @@
"# help(Population) # Uncomment to see the public functions of this object"
]
},
- {
- "cell_type": "markdown",
- "id": "a081ab23-7822-4971-aa82-991548534714",
- "metadata": {},
- "source": [
- "- running ensemble\n",
- "- using M&S grid"
- ]
- },
{
"cell_type": "markdown",
"id": "f268eff3-4e08-4f6b-8b59-f22dba4d2074",
@@ -329,7 +322,7 @@
],
"source": [
"# Add grid variables\n",
- "resolution = {\"M_1\": 20, \"q\": 20, \"per\": 40}\n",
+ "resolution = {\"M_1\": 20}\n",
"\n",
"# Mass\n",
"example_pop.add_grid_variable(\n",
@@ -1125,7 +1118,7 @@
")\n",
"\n",
"# Add grid variables\n",
- "resolution = {\"M_1\": 5, \"q\": 5, \"per\": 5}\n",
+ "resolution = {\"M_1\": 3, \"q\": 3, \"per\": 3}\n",
"\n",
"# Mass\n",
"example_pop.add_grid_variable(\n",
diff --git a/docs/build/html/binary_c_parameters.html b/docs/build/html/binary_c_parameters.html
index a8132f81b92a9e41293f9e6aaf8665570453453c..ecb6bba95e82541b829172e378f1cf7c195befd2 100644
--- a/docs/build/html/binary_c_parameters.html
+++ b/docs/build/html/binary_c_parameters.html
@@ -197,7 +197,7 @@
<h1>Binary_c parameters<a class="headerlink" href="#binary-c-parameters" title="Permalink to this headline">¶</a></h1>
<p>The following chapter contains all the parameters that the current version of binary_c can handle, along with their descriptions and other properties.</p>
<dl class="simple">
-<dt>This information was obtained by the following binary_c build:</dt><dd><p><strong>binary_c git branch</strong>: branch_david <strong>binary_c git revision</strong>: 6101:20210807:c5232be5c <strong>Built on</strong>: Aug 7 2021 17:32:06</p>
+<dt>This information was obtained by the following binary_c build:</dt><dd><p><strong>binary_c git branch</strong>: branch_david <strong>binary_c git revision</strong>: 6162:20210825:093caf0e9 <strong>Built on</strong>: Aug 25 2021 18:02:39</p>
</dd>
</dl>
<div class="section" id="section-stars">
@@ -547,6 +547,25 @@
<div class="line"><strong>Macros</strong>: [‘GB_WIND_REIMERS = 0’, ‘GB_WIND_SCHROEDER_CUNTZ_2005 = 1’, ‘GB_WIND_GOLDMAN_ETAL_2017 = 2’, ‘GB_WIND_BEASOR_ETAL_2020 = 3’]</div>
</div>
<div class="line-block">
+<div class="line"><strong>Parameter</strong>: postagbwind</div>
+<div class="line"><strong>Description</strong>: Apply special post-(A)GB prescription. Default is POSTAGB_WIND_USE_GIANT which means we just use whatever is prescribed on the giant branch. Other options include: POSTAGB_WIND_NONE = 1 (no wind on the post (A)GB), POSTAGB_WIND_KRTICKA2020 = 2 which uses Krticka, Kubát and Krticková (2020, A&A 635, A173).</div>
+<div class="line"><strong>Parameter input type</strong>: Integer</div>
+<div class="line"><strong>Default value</strong>: 0</div>
+<div class="line"><strong>Macros</strong>: [‘POSTAGB_WIND_GIANT = 0’, ‘POSTAGB_WIND_NONE = 1’, ‘POSTAGB_WIND_KRTICKA2020 = 2’]</div>
+</div>
+<div class="line-block">
+<div class="line"><strong>Parameter</strong>: Teff_postAGB_min</div>
+<div class="line"><strong>Description</strong>: The minimum temperature for which we apply post-(A)GB winds. See also Teff_postAGB_max. (6000 K)</div>
+<div class="line"><strong>Parameter input type</strong>: Float</div>
+<div class="line"><strong>Default value</strong>: 6000</div>
+</div>
+<div class="line-block">
+<div class="line"><strong>Parameter</strong>: Teff_postAGB_max</div>
+<div class="line"><strong>Description</strong>: The maximum temperature for which we apply post-(A)GB winds. See also Teff_postAGB_min. (120000 K)</div>
+<div class="line"><strong>Parameter input type</strong>: Float</div>
+<div class="line"><strong>Default value</strong>: 120000</div>
+</div>
+<div class="line-block">
<div class="line"><strong>Parameter</strong>: mattsson_Orich_tpagbwind</div>
<div class="line"><strong>Description</strong>: Experimental: turns on Mattsson’s TPAGB wind when the star is oxygen rich. Requires MATTSSON_MASS_LOSS.</div>
<div class="line"><strong>Parameter input type</strong>: Integer</div>
@@ -664,6 +683,12 @@
<div class="line"><strong>Default value</strong>: 1</div>
</div>
<div class="line-block">
+<div class="line"><strong>Parameter</strong>: Tout_Pringle_1992_multiplier</div>
+<div class="line"><strong>Description</strong>: Multiplier for the Tout & Pringle (1992) magnetic wind. (0.0)</div>
+<div class="line"><strong>Parameter input type</strong>: Float</div>
+<div class="line"><strong>Default value</strong>: 0</div>
+</div>
+<div class="line-block">
<div class="line"><strong>Parameter</strong>: artificial_mass_accretion_rate%d</div>
<div class="line"><strong>Description</strong>: Constant mass accretion rate for star <n>.</div>
<div class="line"><strong>Parameter input type</strong>: Float(scanf)</div>
@@ -716,10 +741,10 @@
</div>
<div class="line-block">
<div class="line"><strong>Parameter</strong>: BH_prescription</div>
-<div class="line"><strong>Description</strong>: Black hole mass prescrition: relates the mass of a newly formed black hole to its progenitor’s (CO) core mass. 0=Hurley et al 2000/2002, 1=Belczynski (early 2000s).</div>
+<div class="line"><strong>Description</strong>: Black hole mass prescrition: relates the mass of a newly formed black hole to its progenitor’s (CO) core mass. BH_HURLEY2002 = 0 = Hurley et al 2000/2002, BH_BELCZYNSKI = 1 = Belczynski (early 2000s), BH_SPERA2015 = Spera+ 2015, BH_FRYER12_DELAYED = 3 = Fryer et al. (2012) delayed prescription, BH_FRYER12_RAPID = 4 = Fryer et al. (2012) rapid prescription, BH_FRYER12_STARTRACK = 5 = Fryer et al. (2012) startrack prescription.</div>
<div class="line"><strong>Parameter input type</strong>: Integer</div>
<div class="line"><strong>Default value</strong>: 0</div>
-<div class="line"><strong>Macros</strong>: [‘BH_HURLEY2002 = 0’, ‘BH_BELCZYNSKI = 1’, ‘BH_SPERA2015 = 2’, ‘BH_FRYER12_DELAYED = 3’, ‘BH_FRYER12_RAPID = 4’]</div>
+<div class="line"><strong>Macros</strong>: [‘BH_HURLEY2002 = 0’, ‘BH_BELCZYNSKI = 1’, ‘BH_SPERA2015 = 2’, ‘BH_FRYER12_DELAYED = 3’, ‘BH_FRYER12_RAPID = 4’, ‘BH_FRYER12_STARTRACK = 5’]</div>
</div>
<div class="line-block">
<div class="line"><strong>Parameter</strong>: PPISN_prescription</div>
@@ -1500,6 +1525,18 @@
<div class="line"><strong>Parameter input type</strong>: Float</div>
<div class="line"><strong>Default value</strong>: 600000</div>
</div>
+<div class="line-block">
+<div class="line"><strong>Parameter</strong>: colour%d</div>
+<div class="line"><strong>Description</strong>: Sets colour %d (0 to NUM_ANSI_COLOURS-1) to the extended ANSI set colour you choose (1-255, 0 means ignore). The colour numbers are defined in src/logging/ansi_colours.h</div>
+<div class="line"><strong>Parameter input type</strong>: Int(scanf)</div>
+<div class="line"><strong>Default value</strong>: NULL</div>
+</div>
+<div class="line-block">
+<div class="line"><strong>Parameter</strong>: apply_Darwin_Radau_correction</div>
+<div class="line"><strong>Description</strong>: Apply Darwin-Radau correction to the moment of inertia to take rotation into account?</div>
+<div class="line"><strong>Parameter input type</strong>: True|False</div>
+<div class="line"><strong>Default value</strong>: False</div>
+</div>
</div>
<div class="section" id="section-binary">
<h2>Section: binary<a class="headerlink" href="#section-binary" title="Permalink to this headline">¶</a></h2>
@@ -3112,6 +3149,13 @@
<div class="line"><strong>Extra</strong>:</div>
</div>
<div class="line-block">
+<div class="line"><strong>Parameter</strong>: log_arrows</div>
+<div class="line"><strong>Description</strong>: Add arrows to the output log to show whether values are increasing or decreasing.</div>
+<div class="line"><strong>Parameter input type</strong>: True|False</div>
+<div class="line"><strong>Default value</strong>: False</div>
+<div class="line"><strong>Extra</strong>:</div>
+</div>
+<div class="line-block">
<div class="line"><strong>Parameter</strong>: stopfile</div>
<div class="line"><strong>Description</strong>: File which, when it exists, will stop the current binary_c repeat run.</div>
<div class="line"><strong>Parameter input type</strong>: String</div>
@@ -3244,6 +3288,13 @@
<div class="line"><strong>Extra</strong>:</div>
</div>
<div class="line-block">
+<div class="line"><strong>Parameter</strong>: MINT_fallback_to_test_data</div>
+<div class="line"><strong>Description</strong>: If TRUE, use the MINT test_data directory as a fallback when data is unavailable. (FALSE)</div>
+<div class="line"><strong>Parameter input type</strong>: True|False</div>
+<div class="line"><strong>Default value</strong>: NULL</div>
+<div class="line"><strong>Extra</strong>:</div>
+</div>
+<div class="line-block">
<div class="line"><strong>Parameter</strong>: MINT_disable_grid_load_warnings</div>
<div class="line"><strong>Description</strong>: Use this to explicitly disable MINT’s warnings when loading a grid with, e.g., missing or too much data.</div>
<div class="line"><strong>Parameter input type</strong>: True|False</div>
@@ -3258,6 +3309,27 @@
<div class="line"><strong>Extra</strong>:</div>
</div>
<div class="line-block">
+<div class="line"><strong>Parameter</strong>: MINT_nshells</div>
+<div class="line"><strong>Description</strong>: Set the initial number of shells MINT uses in each star when doing nuclear burning. Note: remeshing can change this. If MINT_nshells is 0, shellular burning and other routines that require shells will not be available. (200)</div>
+<div class="line"><strong>Parameter input type</strong>: Integer</div>
+<div class="line"><strong>Default value</strong>: NULL</div>
+<div class="line"><strong>Extra</strong>:</div>
+</div>
+<div class="line-block">
+<div class="line"><strong>Parameter</strong>: MINT_maximum_nshells</div>
+<div class="line"><strong>Description</strong>: Set the maximum number of shells MINT uses in each star when doing nuclear burning. Note that this will be limited to MINT_HARD_MAX_NSHELLS. (1000)</div>
+<div class="line"><strong>Parameter input type</strong>: Integer</div>
+<div class="line"><strong>Default value</strong>: NULL</div>
+<div class="line"><strong>Extra</strong>:</div>
+</div>
+<div class="line-block">
+<div class="line"><strong>Parameter</strong>: MINT_minimum_nshells</div>
+<div class="line"><strong>Description</strong>: Set the minimum number of shells MINT uses in each star when doing nuclear burning. Note that this will be greater than or equal to MINT_HARD_MIN_NSHELLS, which is 0 by default. (0)</div>
+<div class="line"><strong>Parameter input type</strong>: Integer</div>
+<div class="line"><strong>Default value</strong>: NULL</div>
+<div class="line"><strong>Extra</strong>:</div>
+</div>
+<div class="line-block">
<div class="line"><strong>Parameter</strong>: MINT_Kippenhahn_stellar_type</div>
<div class="line"><strong>Description</strong>: Stellar type selector for Kippenhahn plots. Set to -1 to ignore, otherwise the stellar type number for which Kippenhahn plot data should be output.</div>
<div class="line"><strong>Parameter input type</strong>: Integer</div>
@@ -3483,9 +3555,9 @@
provided by <a href="https://readthedocs.org">Read the Docs</a>.
<br><br>
-Generated on binarycpython git branch: development_version/2.1.7 git revision b3e29831acaa0f53ec69dc9f97f9d49b48d0c6c9 url: <a href="https://gitlab.eps.surrey.ac.uk/ri0005/binary_c-python/-/tree/development_version/2.1.7">git url</a>.
+Generated on binarycpython git branch: master git revision cac51a6dc71daeeb943b70d5598350ab43901299 url: <a href="https://gitlab.eps.surrey.ac.uk/ri0005/binary_c-python/-/tree/master">git url</a>.
<br><br>
-Using binary_c with bit branch branch_david: git revision: "6101:20210807:c5232be5c" url: <a href="https://gitlab.eps.surrey.ac.uk/ri0005/binary_c/-/tree/branch_david">git url</a>.
+Using binary_c with bit branch branch_david: git revision: "6162:20210825:093caf0e9" url: <a href="https://gitlab.eps.surrey.ac.uk/ri0005/binary_c/-/tree/branch_david">git url</a>.
diff --git a/docs/build/html/custom_logging_functions.html b/docs/build/html/custom_logging_functions.html
index 9999d221b8ae8a17c4b5d367db4068d781cdba07..c7e8dfe67c5db268fcb3dfffd1615518205a5053 100644
--- a/docs/build/html/custom_logging_functions.html
+++ b/docs/build/html/custom_logging_functions.html
@@ -420,9 +420,9 @@ I recommend using this in function in combination with a function that generates
provided by <a href="https://readthedocs.org">Read the Docs</a>.
<br><br>
-Generated on binarycpython git branch: development_version/2.1.7 git revision b3e29831acaa0f53ec69dc9f97f9d49b48d0c6c9 url: <a href="https://gitlab.eps.surrey.ac.uk/ri0005/binary_c-python/-/tree/development_version/2.1.7">git url</a>.
+Generated on binarycpython git branch: master git revision cac51a6dc71daeeb943b70d5598350ab43901299 url: <a href="https://gitlab.eps.surrey.ac.uk/ri0005/binary_c-python/-/tree/master">git url</a>.
<br><br>
-Using binary_c with bit branch branch_david: git revision: "6101:20210807:c5232be5c" url: <a href="https://gitlab.eps.surrey.ac.uk/ri0005/binary_c/-/tree/branch_david">git url</a>.
+Using binary_c with bit branch branch_david: git revision: "6162:20210825:093caf0e9" url: <a href="https://gitlab.eps.surrey.ac.uk/ri0005/binary_c/-/tree/branch_david">git url</a>.
diff --git a/docs/build/html/distribution_functions.html b/docs/build/html/distribution_functions.html
index e2b054585fcdd763f7a7bad40b09d93d8d898c66..2ab05aaf84cc404d58b9abfc3c3507c2293f811c 100644
--- a/docs/build/html/distribution_functions.html
+++ b/docs/build/html/distribution_functions.html
@@ -911,9 +911,9 @@ and is be given by dp/dlogP ~ (logP)^p for all other binary configurations (defa
provided by <a href="https://readthedocs.org">Read the Docs</a>.
<br><br>
-Generated on binarycpython git branch: development_version/2.1.7 git revision b3e29831acaa0f53ec69dc9f97f9d49b48d0c6c9 url: <a href="https://gitlab.eps.surrey.ac.uk/ri0005/binary_c-python/-/tree/development_version/2.1.7">git url</a>.
+Generated on binarycpython git branch: master git revision cac51a6dc71daeeb943b70d5598350ab43901299 url: <a href="https://gitlab.eps.surrey.ac.uk/ri0005/binary_c-python/-/tree/master">git url</a>.
<br><br>
-Using binary_c with bit branch branch_david: git revision: "6101:20210807:c5232be5c" url: <a href="https://gitlab.eps.surrey.ac.uk/ri0005/binary_c/-/tree/branch_david">git url</a>.
+Using binary_c with bit branch branch_david: git revision: "6162:20210825:093caf0e9" url: <a href="https://gitlab.eps.surrey.ac.uk/ri0005/binary_c/-/tree/branch_david">git url</a>.
diff --git a/docs/build/html/example_notebooks.html b/docs/build/html/example_notebooks.html
index 111d819a645bee92d5bc653387dd51e77058524c..57f157057cfb92f6a7a126e21bc85d7bc2ec206a 100644
--- a/docs/build/html/example_notebooks.html
+++ b/docs/build/html/example_notebooks.html
@@ -267,9 +267,9 @@
provided by <a href="https://readthedocs.org">Read the Docs</a>.
<br><br>
-Generated on binarycpython git branch: development_version/2.1.7 git revision b3e29831acaa0f53ec69dc9f97f9d49b48d0c6c9 url: <a href="https://gitlab.eps.surrey.ac.uk/ri0005/binary_c-python/-/tree/development_version/2.1.7">git url</a>.
+Generated on binarycpython git branch: master git revision cac51a6dc71daeeb943b70d5598350ab43901299 url: <a href="https://gitlab.eps.surrey.ac.uk/ri0005/binary_c-python/-/tree/master">git url</a>.
<br><br>
-Using binary_c with bit branch branch_david: git revision: "6101:20210807:c5232be5c" url: <a href="https://gitlab.eps.surrey.ac.uk/ri0005/binary_c/-/tree/branch_david">git url</a>.
+Using binary_c with bit branch branch_david: git revision: "6162:20210825:093caf0e9" url: <a href="https://gitlab.eps.surrey.ac.uk/ri0005/binary_c/-/tree/branch_david">git url</a>.
diff --git a/docs/build/html/functions.html b/docs/build/html/functions.html
index 9a3260db38ebc3216b1002f9ec73483afd10f229..5974c283c710c64fade409bdde0fbb6d975a3aea 100644
--- a/docs/build/html/functions.html
+++ b/docs/build/html/functions.html
@@ -453,6 +453,16 @@ process)</p></li>
</dl>
</dd></dl>
+<dl class="py function">
+<dt id="binarycpython.utils.functions.format_ensemble_results">
+<code class="sig-prename descclassname">binarycpython.utils.functions.</code><code class="sig-name descname">format_ensemble_results</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">ensemble_dictionary</span></em><span class="sig-paren">)</span><a class="reference internal" href="_modules/binarycpython/utils/functions.html#format_ensemble_results"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#binarycpython.utils.functions.format_ensemble_results" title="Permalink to this definition">¶</a></dt>
+<dd><p>Function to handle all the steps of formatting the ensemble output again.</p>
+<dl class="simple">
+<dt>Input:</dt><dd><p>ensemble_dictionary: dictionary containing all the ensemble results</p>
+</dd>
+</dl>
+</dd></dl>
+
<dl class="py function">
<dt id="binarycpython.utils.functions.get_arg_keys">
<code class="sig-prename descclassname">binarycpython.utils.functions.</code><code class="sig-name descname">get_arg_keys</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="_modules/binarycpython/utils/functions.html#get_arg_keys"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#binarycpython.utils.functions.get_arg_keys" title="Permalink to this definition">¶</a></dt>
@@ -780,7 +790,7 @@ Does not work with lists as values</p>
<dl class="py function">
<dt id="binarycpython.utils.functions.return_binary_c_version_info">
-<code class="sig-prename descclassname">binarycpython.utils.functions.</code><code class="sig-name descname">return_binary_c_version_info</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">parsed</span><span class="o">=</span><span class="default_value">False</span></em><span class="sig-paren">)</span><a class="reference internal" href="_modules/binarycpython/utils/functions.html#return_binary_c_version_info"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#binarycpython.utils.functions.return_binary_c_version_info" title="Permalink to this definition">¶</a></dt>
+<code class="sig-prename descclassname">binarycpython.utils.functions.</code><code class="sig-name descname">return_binary_c_version_info</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">parsed</span><span class="o">=</span><span class="default_value">True</span></em><span class="sig-paren">)</span><a class="reference internal" href="_modules/binarycpython/utils/functions.html#return_binary_c_version_info"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#binarycpython.utils.functions.return_binary_c_version_info" title="Permalink to this definition">¶</a></dt>
<dd><p>Function that returns the version information of binary_c. This function calls the function
_binary_c_bindings.return_version_info()</p>
<dl class="field-list simple">
@@ -975,9 +985,9 @@ of all the binary_c parameters.</p>
provided by <a href="https://readthedocs.org">Read the Docs</a>.
<br><br>
-Generated on binarycpython git branch: development_version/2.1.7 git revision b3e29831acaa0f53ec69dc9f97f9d49b48d0c6c9 url: <a href="https://gitlab.eps.surrey.ac.uk/ri0005/binary_c-python/-/tree/development_version/2.1.7">git url</a>.
+Generated on binarycpython git branch: master git revision cac51a6dc71daeeb943b70d5598350ab43901299 url: <a href="https://gitlab.eps.surrey.ac.uk/ri0005/binary_c-python/-/tree/master">git url</a>.
<br><br>
-Using binary_c with bit branch branch_david: git revision: "6101:20210807:c5232be5c" url: <a href="https://gitlab.eps.surrey.ac.uk/ri0005/binary_c/-/tree/branch_david">git url</a>.
+Using binary_c with bit branch branch_david: git revision: "6162:20210825:093caf0e9" url: <a href="https://gitlab.eps.surrey.ac.uk/ri0005/binary_c/-/tree/branch_david">git url</a>.
diff --git a/docs/build/html/genindex.html b/docs/build/html/genindex.html
index 96bac49dd83dd2493507f48e9061cc09b1950055..eae56de59cb0f778be5dce4a5c0c29481ef26acd 100644
--- a/docs/build/html/genindex.html
+++ b/docs/build/html/genindex.html
@@ -412,7 +412,7 @@
<td style="width: 33%; vertical-align: top;"><ul>
<li><a href="distribution_functions.html#binarycpython.utils.distribution_functions.flatsections">flatsections() (in module binarycpython.utils.distribution_functions)</a>
</li>
- <li><a href="grid.html#binarycpython.utils.grid.Population.format_ensemble_results">format_ensemble_results() (binarycpython.utils.grid.Population method)</a>
+ <li><a href="functions.html#binarycpython.utils.functions.format_ensemble_results">format_ensemble_results() (in module binarycpython.utils.functions)</a>
</li>
<li><a href="custom_logging_functions.html#binarycpython.utils.custom_logging_functions.from_binary_c_config">from_binary_c_config() (in module binarycpython.utils.custom_logging_functions)</a>
</li>
@@ -760,9 +760,9 @@
provided by <a href="https://readthedocs.org">Read the Docs</a>.
<br><br>
-Generated on binarycpython git branch: development_version/2.1.7 git revision b3e29831acaa0f53ec69dc9f97f9d49b48d0c6c9 url: <a href="https://gitlab.eps.surrey.ac.uk/ri0005/binary_c-python/-/tree/development_version/2.1.7">git url</a>.
+Generated on binarycpython git branch: master git revision cac51a6dc71daeeb943b70d5598350ab43901299 url: <a href="https://gitlab.eps.surrey.ac.uk/ri0005/binary_c-python/-/tree/master">git url</a>.
<br><br>
-Using binary_c with bit branch branch_david: git revision: "6101:20210807:c5232be5c" url: <a href="https://gitlab.eps.surrey.ac.uk/ri0005/binary_c/-/tree/branch_david">git url</a>.
+Using binary_c with bit branch branch_david: git revision: "6162:20210825:093caf0e9" url: <a href="https://gitlab.eps.surrey.ac.uk/ri0005/binary_c/-/tree/branch_david">git url</a>.
diff --git a/docs/build/html/grid.html b/docs/build/html/grid.html
index a62bb99644bd71ccaecb3d31b0c044d15d555883..35540c71ac6ac40f27c557475141e40960def4bb 100644
--- a/docs/build/html/grid.html
+++ b/docs/build/html/grid.html
@@ -241,7 +241,7 @@ then set the distribution functions</p>
<dl class="py method">
<dt id="binarycpython.utils.grid.Population.add_grid_variable">
-<code class="sig-name descname">add_grid_variable</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">name</span></em>, <em class="sig-param"><span class="n">longname</span></em>, <em class="sig-param"><span class="n">valuerange</span></em>, <em class="sig-param"><span class="n">resolution</span></em>, <em class="sig-param"><span class="n">spacingfunc</span></em>, <em class="sig-param"><span class="n">probdist</span></em>, <em class="sig-param"><span class="n">dphasevol</span></em>, <em class="sig-param"><span class="n">parameter_name</span></em>, <em class="sig-param"><span class="n">gridtype</span><span class="o">=</span><span class="default_value">'edge'</span></em>, <em class="sig-param"><span class="n">branchpoint</span><span class="o">=</span><span class="default_value">0</span></em>, <em class="sig-param"><span class="n">precode</span><span class="o">=</span><span class="default_value">None</span></em>, <em class="sig-param"><span class="n">condition</span><span class="o">=</span><span class="default_value">None</span></em><span class="sig-paren">)</span><a class="reference internal" href="_modules/binarycpython/utils/grid.html#Population.add_grid_variable"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#binarycpython.utils.grid.Population.add_grid_variable" title="Permalink to this definition">¶</a></dt>
+<code class="sig-name descname">add_grid_variable</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">name</span></em>, <em class="sig-param"><span class="n">longname</span></em>, <em class="sig-param"><span class="n">valuerange</span></em>, <em class="sig-param"><span class="n">resolution</span></em>, <em class="sig-param"><span class="n">spacingfunc</span></em>, <em class="sig-param"><span class="n">probdist</span></em>, <em class="sig-param"><span class="n">dphasevol</span></em>, <em class="sig-param"><span class="n">parameter_name</span></em>, <em class="sig-param"><span class="n">gridtype</span><span class="o">=</span><span class="default_value">'centred'</span></em>, <em class="sig-param"><span class="n">branchpoint</span><span class="o">=</span><span class="default_value">0</span></em>, <em class="sig-param"><span class="n">precode</span><span class="o">=</span><span class="default_value">None</span></em>, <em class="sig-param"><span class="n">condition</span><span class="o">=</span><span class="default_value">None</span></em><span class="sig-paren">)</span><a class="reference internal" href="_modules/binarycpython/utils/grid.html#Population.add_grid_variable"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#binarycpython.utils.grid.Population.add_grid_variable" title="Permalink to this definition">¶</a></dt>
<dd><p>Function to add grid variables to the grid_options.</p>
<p>The execution of the grid generation will be through a nested for loop.
Each of the grid variables will get create a deeper for loop.</p>
@@ -302,7 +302,7 @@ if you want to ignore any dphasevol calculations and set the value to 1
<p>condition = ‘self.grid_options[‘binary’]==1’</p>
</p></li>
<li><p><strong>gridtype</strong> (<code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code>) – Method on how the value range is sampled. Can be either ‘edge’ (steps starting at
-the lower edge of the value range) or ‘center’
+the lower edge of the value range) or ‘centred’
(steps starting at lower edge + 0.5 * stepsize).</p></li>
</ul>
</dd>
@@ -398,16 +398,6 @@ simulation_<date+time>_settings.json will be created</p></li>
</dl>
</dd></dl>
-<dl class="py method">
-<dt id="binarycpython.utils.grid.Population.format_ensemble_results">
-<code class="sig-name descname">format_ensemble_results</code><span class="sig-paren">(</span><em class="sig-param"><span class="n">ensemble_dictionary</span></em><span class="sig-paren">)</span><a class="reference internal" href="_modules/binarycpython/utils/grid.html#Population.format_ensemble_results"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#binarycpython.utils.grid.Population.format_ensemble_results" title="Permalink to this definition">¶</a></dt>
-<dd><p>Function to handle all the steps of formatting the ensemble output again.</p>
-<dl class="simple">
-<dt>Input:</dt><dd><p>ensemble_dictionary: dictionary containing all the ensemble results</p>
-</dd>
-</dl>
-</dd></dl>
-
<dl class="py method">
<dt id="binarycpython.utils.grid.Population.parse_cmdline">
<code class="sig-name descname">parse_cmdline</code><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="_modules/binarycpython/utils/grid.html#Population.parse_cmdline"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#binarycpython.utils.grid.Population.parse_cmdline" title="Permalink to this definition">¶</a></dt>
@@ -585,9 +575,9 @@ like m1,m2,sep, orb-per, ecc, probability etc.</p>
provided by <a href="https://readthedocs.org">Read the Docs</a>.
<br><br>
-Generated on binarycpython git branch: development_version/2.1.7 git revision b3e29831acaa0f53ec69dc9f97f9d49b48d0c6c9 url: <a href="https://gitlab.eps.surrey.ac.uk/ri0005/binary_c-python/-/tree/development_version/2.1.7">git url</a>.
+Generated on binarycpython git branch: master git revision cac51a6dc71daeeb943b70d5598350ab43901299 url: <a href="https://gitlab.eps.surrey.ac.uk/ri0005/binary_c-python/-/tree/master">git url</a>.
<br><br>
-Using binary_c with bit branch branch_david: git revision: "6101:20210807:c5232be5c" url: <a href="https://gitlab.eps.surrey.ac.uk/ri0005/binary_c/-/tree/branch_david">git url</a>.
+Using binary_c with bit branch branch_david: git revision: "6162:20210825:093caf0e9" url: <a href="https://gitlab.eps.surrey.ac.uk/ri0005/binary_c/-/tree/branch_david">git url</a>.
diff --git a/docs/build/html/grid_options_defaults.html b/docs/build/html/grid_options_defaults.html
index f0ca1669d28ea7694a4487c45597e1002ebd2cb2..151d7f68328cee9ce102edc9cefdd02b8f579452 100644
--- a/docs/build/html/grid_options_defaults.html
+++ b/docs/build/html/grid_options_defaults.html
@@ -308,9 +308,9 @@
provided by <a href="https://readthedocs.org">Read the Docs</a>.
<br><br>
-Generated on binarycpython git branch: development_version/2.1.7 git revision b3e29831acaa0f53ec69dc9f97f9d49b48d0c6c9 url: <a href="https://gitlab.eps.surrey.ac.uk/ri0005/binary_c-python/-/tree/development_version/2.1.7">git url</a>.
+Generated on binarycpython git branch: master git revision cac51a6dc71daeeb943b70d5598350ab43901299 url: <a href="https://gitlab.eps.surrey.ac.uk/ri0005/binary_c-python/-/tree/master">git url</a>.
<br><br>
-Using binary_c with bit branch branch_david: git revision: "6101:20210807:c5232be5c" url: <a href="https://gitlab.eps.surrey.ac.uk/ri0005/binary_c/-/tree/branch_david">git url</a>.
+Using binary_c with bit branch branch_david: git revision: "6162:20210825:093caf0e9" url: <a href="https://gitlab.eps.surrey.ac.uk/ri0005/binary_c/-/tree/branch_david">git url</a>.
diff --git a/docs/build/html/grid_options_descriptions.html b/docs/build/html/grid_options_descriptions.html
index 1c33c6433286885039613004c202bf8081eb50cc..65faf9f0740dd366409a5a672072b306f8e0913f 100644
--- a/docs/build/html/grid_options_descriptions.html
+++ b/docs/build/html/grid_options_descriptions.html
@@ -479,9 +479,9 @@ q extrapolation (below 0.15) method
provided by <a href="https://readthedocs.org">Read the Docs</a>.
<br><br>
-Generated on binarycpython git branch: development_version/2.1.7 git revision b3e29831acaa0f53ec69dc9f97f9d49b48d0c6c9 url: <a href="https://gitlab.eps.surrey.ac.uk/ri0005/binary_c-python/-/tree/development_version/2.1.7">git url</a>.
+Generated on binarycpython git branch: master git revision cac51a6dc71daeeb943b70d5598350ab43901299 url: <a href="https://gitlab.eps.surrey.ac.uk/ri0005/binary_c-python/-/tree/master">git url</a>.
<br><br>
-Using binary_c with bit branch branch_david: git revision: "6101:20210807:c5232be5c" url: <a href="https://gitlab.eps.surrey.ac.uk/ri0005/binary_c/-/tree/branch_david">git url</a>.
+Using binary_c with bit branch branch_david: git revision: "6162:20210825:093caf0e9" url: <a href="https://gitlab.eps.surrey.ac.uk/ri0005/binary_c/-/tree/branch_david">git url</a>.
diff --git a/docs/build/html/hpc_functions.html b/docs/build/html/hpc_functions.html
index 44e0266191dbc32f499c6b387e3ae84cd66fd672..eaeff7cea57990585a6573779a0158f00404795a 100644
--- a/docs/build/html/hpc_functions.html
+++ b/docs/build/html/hpc_functions.html
@@ -239,9 +239,9 @@
provided by <a href="https://readthedocs.org">Read the Docs</a>.
<br><br>
-Generated on binarycpython git branch: development_version/2.1.7 git revision b3e29831acaa0f53ec69dc9f97f9d49b48d0c6c9 url: <a href="https://gitlab.eps.surrey.ac.uk/ri0005/binary_c-python/-/tree/development_version/2.1.7">git url</a>.
+Generated on binarycpython git branch: master git revision cac51a6dc71daeeb943b70d5598350ab43901299 url: <a href="https://gitlab.eps.surrey.ac.uk/ri0005/binary_c-python/-/tree/master">git url</a>.
<br><br>
-Using binary_c with bit branch branch_david: git revision: "6101:20210807:c5232be5c" url: <a href="https://gitlab.eps.surrey.ac.uk/ri0005/binary_c/-/tree/branch_david">git url</a>.
+Using binary_c with bit branch branch_david: git revision: "6162:20210825:093caf0e9" url: <a href="https://gitlab.eps.surrey.ac.uk/ri0005/binary_c/-/tree/branch_david">git url</a>.
diff --git a/docs/build/html/index.html b/docs/build/html/index.html
index 5274adf9bc72aef3a96126d2a7cf78c7a0041ff4..66993241b0901cf713f4522449f50cb21f9fe77f 100644
--- a/docs/build/html/index.html
+++ b/docs/build/html/index.html
@@ -192,7 +192,7 @@
<p>Test coverage:</p>
<a class="reference external image-reference" href="./badges/test_coverage.svg"><img alt="test coverage" src="_images/test_coverage.svg" /></a>
<p>Binary population synthesis code that interfaces with binary_c. Based on a original work by Jeff Andrews (can be found in old_solution/ directory). Updated and extended for Python3 by David Hendriks, Robert Izzard.</p>
-<p>The current release is version 0.4, make sure to use that version number when installing!</p>
+<p>The current release is version 0.9.1, make sure to use that version number when installing!</p>
<div class="section" id="requirements">
<h2>Requirements<a class="headerlink" href="#requirements" title="Permalink to this headline">¶</a></h2>
<p>To run this code you need to at least have installations of:</p>
@@ -382,9 +382,9 @@
provided by <a href="https://readthedocs.org">Read the Docs</a>.
<br><br>
-Generated on binarycpython git branch: development_version/2.1.7 git revision b3e29831acaa0f53ec69dc9f97f9d49b48d0c6c9 url: <a href="https://gitlab.eps.surrey.ac.uk/ri0005/binary_c-python/-/tree/development_version/2.1.7">git url</a>.
+Generated on binarycpython git branch: master git revision cac51a6dc71daeeb943b70d5598350ab43901299 url: <a href="https://gitlab.eps.surrey.ac.uk/ri0005/binary_c-python/-/tree/master">git url</a>.
<br><br>
-Using binary_c with bit branch branch_david: git revision: "6101:20210807:c5232be5c" url: <a href="https://gitlab.eps.surrey.ac.uk/ri0005/binary_c/-/tree/branch_david">git url</a>.
+Using binary_c with bit branch branch_david: git revision: "6162:20210825:093caf0e9" url: <a href="https://gitlab.eps.surrey.ac.uk/ri0005/binary_c/-/tree/branch_david">git url</a>.
diff --git a/docs/build/html/modules.html b/docs/build/html/modules.html
index 4451ca2551094237079f651ad9d305c9cf2615df..076e1dc8c845801842c00d953e25addd12f23df7 100644
--- a/docs/build/html/modules.html
+++ b/docs/build/html/modules.html
@@ -250,9 +250,9 @@
provided by <a href="https://readthedocs.org">Read the Docs</a>.
<br><br>
-Generated on binarycpython git branch: development_version/2.1.7 git revision b3e29831acaa0f53ec69dc9f97f9d49b48d0c6c9 url: <a href="https://gitlab.eps.surrey.ac.uk/ri0005/binary_c-python/-/tree/development_version/2.1.7">git url</a>.
+Generated on binarycpython git branch: master git revision cac51a6dc71daeeb943b70d5598350ab43901299 url: <a href="https://gitlab.eps.surrey.ac.uk/ri0005/binary_c-python/-/tree/master">git url</a>.
<br><br>
-Using binary_c with bit branch branch_david: git revision: "6101:20210807:c5232be5c" url: <a href="https://gitlab.eps.surrey.ac.uk/ri0005/binary_c/-/tree/branch_david">git url</a>.
+Using binary_c with bit branch branch_david: git revision: "6162:20210825:093caf0e9" url: <a href="https://gitlab.eps.surrey.ac.uk/ri0005/binary_c/-/tree/branch_david">git url</a>.
diff --git a/docs/build/html/notebook_api_functionality.html b/docs/build/html/notebook_api_functionality.html
index 4f4782007ad1aef5b5313323d6c4b0413980f1ba..c4b2e364a7fb0ec61b3435caa07adf1e6f6bcc52 100644
--- a/docs/build/html/notebook_api_functionality.html
+++ b/docs/build/html/notebook_api_functionality.html
@@ -1347,9 +1347,9 @@ MAXIMUM MASS RATIO 0.0141
provided by <a href="https://readthedocs.org">Read the Docs</a>.
<br><br>
-Generated on binarycpython git branch: development_version/2.1.7 git revision b3e29831acaa0f53ec69dc9f97f9d49b48d0c6c9 url: <a href="https://gitlab.eps.surrey.ac.uk/ri0005/binary_c-python/-/tree/development_version/2.1.7">git url</a>.
+Generated on binarycpython git branch: master git revision cac51a6dc71daeeb943b70d5598350ab43901299 url: <a href="https://gitlab.eps.surrey.ac.uk/ri0005/binary_c-python/-/tree/master">git url</a>.
<br><br>
-Using binary_c with bit branch branch_david: git revision: "6101:20210807:c5232be5c" url: <a href="https://gitlab.eps.surrey.ac.uk/ri0005/binary_c/-/tree/branch_david">git url</a>.
+Using binary_c with bit branch branch_david: git revision: "6162:20210825:093caf0e9" url: <a href="https://gitlab.eps.surrey.ac.uk/ri0005/binary_c/-/tree/branch_david">git url</a>.
diff --git a/docs/build/html/notebook_custom_logging.html b/docs/build/html/notebook_custom_logging.html
index 513172b9a73b26a76049b99688cc1405953b4a1e..1c8c66116ae305fa4e1790f093b731392bb1f5e9 100644
--- a/docs/build/html/notebook_custom_logging.html
+++ b/docs/build/html/notebook_custom_logging.html
@@ -902,9 +902,9 @@ EXAMPLE_SN 9.878236827680e+00 1.61349 8.38063 20 12 13 5 1 6.74037 4
provided by <a href="https://readthedocs.org">Read the Docs</a>.
<br><br>
-Generated on binarycpython git branch: development_version/2.1.7 git revision b3e29831acaa0f53ec69dc9f97f9d49b48d0c6c9 url: <a href="https://gitlab.eps.surrey.ac.uk/ri0005/binary_c-python/-/tree/development_version/2.1.7">git url</a>.
+Generated on binarycpython git branch: master git revision cac51a6dc71daeeb943b70d5598350ab43901299 url: <a href="https://gitlab.eps.surrey.ac.uk/ri0005/binary_c-python/-/tree/master">git url</a>.
<br><br>
-Using binary_c with bit branch branch_david: git revision: "6101:20210807:c5232be5c" url: <a href="https://gitlab.eps.surrey.ac.uk/ri0005/binary_c/-/tree/branch_david">git url</a>.
+Using binary_c with bit branch branch_david: git revision: "6162:20210825:093caf0e9" url: <a href="https://gitlab.eps.surrey.ac.uk/ri0005/binary_c/-/tree/branch_david">git url</a>.
diff --git a/docs/build/html/notebook_extra_features.html b/docs/build/html/notebook_extra_features.html
index ee66bbf25e2a1aa07ef183c24debd3b0b0409fad..bd6f0c339880fd59d4c25aea33c9efb517867483 100644
--- a/docs/build/html/notebook_extra_features.html
+++ b/docs/build/html/notebook_extra_features.html
@@ -646,9 +646,9 @@ get_defaults(filter_values:bool=False) -> dict
provided by <a href="https://readthedocs.org">Read the Docs</a>.
<br><br>
-Generated on binarycpython git branch: development_version/2.1.7 git revision b3e29831acaa0f53ec69dc9f97f9d49b48d0c6c9 url: <a href="https://gitlab.eps.surrey.ac.uk/ri0005/binary_c-python/-/tree/development_version/2.1.7">git url</a>.
+Generated on binarycpython git branch: master git revision cac51a6dc71daeeb943b70d5598350ab43901299 url: <a href="https://gitlab.eps.surrey.ac.uk/ri0005/binary_c-python/-/tree/master">git url</a>.
<br><br>
-Using binary_c with bit branch branch_david: git revision: "6101:20210807:c5232be5c" url: <a href="https://gitlab.eps.surrey.ac.uk/ri0005/binary_c/-/tree/branch_david">git url</a>.
+Using binary_c with bit branch branch_david: git revision: "6162:20210825:093caf0e9" url: <a href="https://gitlab.eps.surrey.ac.uk/ri0005/binary_c/-/tree/branch_david">git url</a>.
diff --git a/docs/build/html/notebook_individual_systems.html b/docs/build/html/notebook_individual_systems.html
index 628bedab34a2a27a2d866463adc31f404dba10fc..f2110d005926fc4d6ef036b02c16691600b1ee71 100644
--- a/docs/build/html/notebook_individual_systems.html
+++ b/docs/build/html/notebook_individual_systems.html
@@ -456,13 +456,24 @@ div.rendered_html tbody tr:hover {
</pre></div>
</div>
<div class="input_area highlight-ipython3 notranslate"><div class="highlight"><pre>
+<span></span><span class="kn">import</span> <span class="nn">os</span>
+<span class="kn">from</span> <span class="nn">binarycpython.utils.functions</span> <span class="kn">import</span> <span class="n">temp_dir</span>
+<span class="n">TMP_DIR</span> <span class="o">=</span> <span class="n">temp_dir</span><span class="p">(</span><span class="s2">"notebooks"</span><span class="p">,</span> <span class="s2">"notebook_individual_systems"</span><span class="p">)</span>
+</pre></div>
+</div>
+</div>
+<div class="nbinput nblast docutils container">
+<div class="prompt highlight-none notranslate"><div class="highlight"><pre><span></span>[2]:
+</pre></div>
+</div>
+<div class="input_area highlight-ipython3 notranslate"><div class="highlight"><pre>
<span></span><span class="kn">from</span> <span class="nn">binarycpython.utils.run_system_wrapper</span> <span class="kn">import</span> <span class="n">run_system</span>
<span class="c1"># help(run_system) # Uncomment to see the docstring</span>
</pre></div>
</div>
</div>
<div class="nbinput docutils container">
-<div class="prompt highlight-none notranslate"><div class="highlight"><pre><span></span>[2]:
+<div class="prompt highlight-none notranslate"><div class="highlight"><pre><span></span>[3]:
</pre></div>
</div>
<div class="input_area highlight-ipython3 notranslate"><div class="highlight"><pre>
@@ -476,18 +487,19 @@ div.rendered_html tbody tr:hover {
</div>
<div class="output_area docutils container">
<div class="highlight"><pre>
-SINGLE_STAR_LIFETIME 1 12462
+SINGLE_STAR_LIFETIME 1 12461.9
</pre></div></div>
</div>
<p>Lets try adding a log filename now:</p>
<div class="nbinput docutils container">
-<div class="prompt highlight-none notranslate"><div class="highlight"><pre><span></span>[3]:
+<div class="prompt highlight-none notranslate"><div class="highlight"><pre><span></span>[4]:
</pre></div>
</div>
<div class="input_area highlight-ipython3 notranslate"><div class="highlight"><pre>
-<span></span><span class="n">output</span> <span class="o">=</span> <span class="n">run_system</span><span class="p">(</span><span class="n">M_1</span><span class="o">=</span><span class="mi">1</span><span class="p">,</span> <span class="n">log_filename</span><span class="o">=</span><span class="s1">'/tmp/test_logfile.txt'</span><span class="p">)</span>
-<span class="k">with</span> <span class="nb">open</span><span class="p">(</span><span class="s1">'/tmp/test_logfile.txt'</span><span class="p">,</span> <span class="s1">'r'</span><span class="p">)</span> <span class="k">as</span> <span class="n">f</span><span class="p">:</span>
+<span></span><span class="n">log_filename</span> <span class="o">=</span> <span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">join</span><span class="p">(</span><span class="n">TMP_DIR</span><span class="p">,</span> <span class="s1">'test_logfile.txt'</span><span class="p">)</span>
+<span class="n">output</span> <span class="o">=</span> <span class="n">run_system</span><span class="p">(</span><span class="n">M_1</span><span class="o">=</span><span class="mi">1</span><span class="p">,</span> <span class="n">log_filename</span><span class="o">=</span><span class="n">log_filename</span><span class="p">,</span> <span class="n">api_log_filename_prefix</span><span class="o">=</span><span class="n">TMP_DIR</span><span class="p">)</span>
+<span class="k">with</span> <span class="nb">open</span><span class="p">(</span><span class="n">log_filename</span><span class="p">,</span> <span class="s1">'r'</span><span class="p">)</span> <span class="k">as</span> <span class="n">f</span><span class="p">:</span>
<span class="nb">print</span><span class="p">(</span><span class="n">f</span><span class="o">.</span><span class="n">read</span><span class="p">())</span>
</pre></div>
</div>
@@ -497,23 +509,23 @@ SINGLE_STAR_LIFETIME 1 12462
</div>
<div class="output_area docutils container">
<div class="highlight"><pre>
- TIME M1 M2 K1 K2 SEP ECC R1/ROL1 R2/ROL2 TYPE RANDOM_SEED=67365 RANDOM_COUNT=0
- 0.0000 1.000 0.000 1 15 -1 -1.00 0.000 0.000 "INITIAL "
- 11003.1302 1.000 0.000 2 15 -1 -1.00 0.000 0.000 "OFF_MS"
- 11003.1302 1.000 0.000 2 15 -1 -1.00 0.000 0.000 "TYPE_CHNGE"
- 11582.2424 1.000 0.000 3 15 -1 -1.00 0.000 0.000 "TYPE_CHNGE"
- 12325.1085 0.817 0.000 4 15 -1 -1.00 0.000 0.000 "TYPE_CHNGE"
- 12457.1300 0.783 0.000 5 15 -1 -1.00 0.000 0.000 "TYPE_CHNGE"
- 12460.8955 0.774 0.000 6 15 -1 -1.00 0.000 0.000 "TYPE_CHNGE"
- 12460.8955 0.774 0.000 6 15 -1 -1.00 0.000 0.000 "shrinkAGB"
- 12461.9514 0.523 0.000 11 15 -1 -1.00 0.000 0.000 "TYPE_CHNGE"
- 15000.0000 0.523 0.000 11 15 -1 -1.00 0.000 0.000 "MAX_TIME"
+ TIME M1 M2 K1 K2 SEP PER ECC R1/ROL1 R2/ROL2 TYPE RANDOM_SEED=17089 RANDOM_COUNT=0
+ 0.0000 1.000 0.000 1 15 -1 -1 -1.00 0.000 0.000 "INITIAL "
+ 11003.1302 1.000 0.000 2 15 -1 -1 -1.00 0.000 0.000 "OFF_MS"
+ 11003.1302 1.000 0.000 2 15 -1 -1 -1.00 0.000 0.000 "TYPE_CHNGE"
+ 11582.2424 1.000 0.000 3 15 -1 -1 -1.00 0.000 0.000 "TYPE_CHNGE"
+ 12325.1085 0.817 0.000 4 15 -1 -1 -1.00 0.000 0.000 "TYPE_CHNGE"
+ 12457.1301 0.783 0.000 5 15 -1 -1 -1.00 0.000 0.000 "TYPE_CHNGE"
+ 12460.9983 0.716 0.000 6 15 -1 -1 -1.00 0.000 0.000 "TYPE_CHNGE"
+ 12460.9983 0.716 0.000 6 15 -1 -1 -1.00 0.000 0.000 "shrinkAGB"
+ 12461.9458 0.518 0.000 11 15 -1 -1 -1.00 0.000 0.000 "TYPE_CHNGE"
+ 15000.0000 0.518 0.000 11 15 -1 -1 -1.00 0.000 0.000 "MAX_TIME"
</pre></div></div>
</div>
<p>To get more useful output we can include a custom_logging snippet (see notebook_custom_logging):</p>
<div class="nbinput docutils container">
-<div class="prompt highlight-none notranslate"><div class="highlight"><pre><span></span>[6]:
+<div class="prompt highlight-none notranslate"><div class="highlight"><pre><span></span>[5]:
</pre></div>
</div>
<div class="input_area highlight-ipython3 notranslate"><div class="highlight"><pre>
@@ -534,8 +546,8 @@ SINGLE_STAR_LIFETIME 1 12462
<span class="c1"># Generate entire shared lib code around logging lines</span>
<span class="n">custom_logging_code</span> <span class="o">=</span> <span class="n">binary_c_log_code</span><span class="p">(</span><span class="n">custom_logging_print_statement</span><span class="p">)</span>
-<span class="n">output</span> <span class="o">=</span> <span class="n">run_system</span><span class="p">(</span><span class="n">M_1</span><span class="o">=</span><span class="mi">1</span><span class="p">,</span> <span class="n">custom_logging_code</span><span class="o">=</span><span class="n">custom_logging_code</span><span class="p">)</span>
-<span class="nb">print</span><span class="p">(</span><span class="n">output</span><span class="o">.</span><span class="n">splitlines</span><span class="p">()[:</span><span class="mi">4</span><span class="p">])</span>
+<span class="n">output</span> <span class="o">=</span> <span class="n">run_system</span><span class="p">(</span><span class="n">M_1</span><span class="o">=</span><span class="mi">1</span><span class="p">,</span> <span class="n">custom_logging_code</span><span class="o">=</span><span class="n">custom_logging_code</span><span class="p">,</span> <span class="n">api_log_filename_prefix</span><span class="o">=</span><span class="n">TMP_DIR</span><span class="p">)</span>
+<span class="nb">print</span><span class="p">(</span><span class="s1">'</span><span class="se">\n</span><span class="s1">'</span><span class="o">.</span><span class="n">join</span><span class="p">(</span><span class="n">output</span><span class="o">.</span><span class="n">splitlines</span><span class="p">()[:</span><span class="mi">4</span><span class="p">]))</span>
</pre></div>
</div>
</div>
@@ -544,12 +556,15 @@ SINGLE_STAR_LIFETIME 1 12462
</div>
<div class="output_area docutils container">
<div class="highlight"><pre>
-['EXAMPLE_MASSLOSS 0.000000000000e+00 1 1 1', 'EXAMPLE_MASSLOSS 0.000000000000e+00 1 1 1', 'EXAMPLE_MASSLOSS 1.000000000000e-06 1 1 1', 'EXAMPLE_MASSLOSS 2.000000000000e-06 1 1 1']
+EXAMPLE_MASSLOSS 0.000000000000e+00 1 1 1
+EXAMPLE_MASSLOSS 0.000000000000e+00 1 1 1
+EXAMPLE_MASSLOSS 1.000000000000e-06 1 1 1
+EXAMPLE_MASSLOSS 2.000000000000e-06 1 1 1
</pre></div></div>
</div>
<p>Now we have some actual output, it is time to create a parse_function which parses the output. Adding a parse_function to the run_system will make run_system run the output of binary_c through the parse_function.</p>
<div class="nbinput docutils container">
-<div class="prompt highlight-none notranslate"><div class="highlight"><pre><span></span>[7]:
+<div class="prompt highlight-none notranslate"><div class="highlight"><pre><span></span>[6]:
</pre></div>
</div>
<div class="input_area highlight-ipython3 notranslate"><div class="highlight"><pre>
@@ -591,7 +606,7 @@ SINGLE_STAR_LIFETIME 1 12462
</div>
<p>This output can now be turned into e.g. an Numpy array or Pandas dataframe (my favorite: makes querying the data very easy)</p>
<div class="nbinput docutils container">
-<div class="prompt highlight-none notranslate"><div class="highlight"><pre><span></span>[8]:
+<div class="prompt highlight-none notranslate"><div class="highlight"><pre><span></span>[7]:
</pre></div>
</div>
<div class="input_area highlight-ipython3 notranslate"><div class="highlight"><pre>
@@ -620,13 +635,13 @@ SINGLE_STAR_LIFETIME 1 12462
4 2e-06 1 1 1
5 3e-06 1 1 1
... ... ... ... ...
-1612 12461.8 0.577754 1 6
-1613 12462 0.522806 1 11
-1614 13462 0.522806 1 11
-1615 14462 0.522806 1 11
-1616 15000 0.522806 1 11
+1617 12461.8 0.546683 1 6
+1618 12461.9 0.517749 1 11
+1619 13461.9 0.517749 1 11
+1620 14461.9 0.517749 1 11
+1621 15000 0.517749 1 11
-[1616 rows x 4 columns]
+[1621 rows x 4 columns]
</pre></div></div>
</div>
</div>
@@ -634,7 +649,7 @@ SINGLE_STAR_LIFETIME 1 12462
<h2>Single system via population object<a class="headerlink" href="#Single-system-via-population-object" title="Permalink to this headline">¶</a></h2>
<p>When setting up your population object (see notebook_population), and configuring all the parameters, it is possible to run a single system using that same configuration. It will use the parse_function if set, and running a single system is a good method to test if everything works accordingly.</p>
<div class="nbinput nblast docutils container">
-<div class="prompt highlight-none notranslate"><div class="highlight"><pre><span></span>[9]:
+<div class="prompt highlight-none notranslate"><div class="highlight"><pre><span></span>[8]:
</pre></div>
</div>
<div class="input_area highlight-ipython3 notranslate"><div class="highlight"><pre>
@@ -645,7 +660,7 @@ SINGLE_STAR_LIFETIME 1 12462
</div>
<p>First, let’s try this without any custom logging or parsing functionality</p>
<div class="nbinput docutils container">
-<div class="prompt highlight-none notranslate"><div class="highlight"><pre><span></span>[10]:
+<div class="prompt highlight-none notranslate"><div class="highlight"><pre><span></span>[9]:
</pre></div>
</div>
<div class="input_area highlight-ipython3 notranslate"><div class="highlight"><pre>
@@ -654,7 +669,8 @@ SINGLE_STAR_LIFETIME 1 12462
<span class="c1"># Set some parameters</span>
<span class="n">example_pop</span><span class="o">.</span><span class="n">set</span><span class="p">(</span>
- <span class="n">verbosity</span><span class="o">=</span><span class="mi">1</span>
+ <span class="n">verbosity</span><span class="o">=</span><span class="mi">1</span><span class="p">,</span>
+ <span class="n">api_log_filename_prefix</span><span class="o">=</span><span class="n">TMP_DIR</span>
<span class="p">)</span>
<span class="n">example_pop</span><span class="o">.</span><span class="n">set</span><span class="p">(</span>
<span class="n">M_1</span><span class="o">=</span><span class="mi">10</span>
@@ -671,17 +687,18 @@ SINGLE_STAR_LIFETIME 1 12462
</div>
<div class="output_area docutils container">
<div class="highlight"><pre>
+adding: api_log_filename_prefix=/tmp/binary_c_python/notebooks/notebook_individual_systems to BSE_options
adding: M_1=10 to BSE_options
Creating and loading custom logging functionality
-Running binary_c M_1 10
+Running binary_c M_1 10 api_log_filename_prefix /tmp/binary_c_python/notebooks/notebook_individual_systems
Cleaning up the custom logging stuff. type: single
-SINGLE_STAR_LIFETIME 10 27.7358
+SINGLE_STAR_LIFETIME 10 28.4838
</pre></div></div>
</div>
<p>Now lets add some actual output with the custom logging</p>
<div class="nbinput docutils container">
-<div class="prompt highlight-none notranslate"><div class="highlight"><pre><span></span>[13]:
+<div class="prompt highlight-none notranslate"><div class="highlight"><pre><span></span>[10]:
</pre></div>
</div>
<div class="input_area highlight-ipython3 notranslate"><div class="highlight"><pre>
@@ -701,7 +718,7 @@ SINGLE_STAR_LIFETIME 10 27.7358
<span class="c1"># get output and print</span>
<span class="n">output</span> <span class="o">=</span> <span class="n">example_pop</span><span class="o">.</span><span class="n">evolve_single</span><span class="p">()</span>
-<span class="nb">print</span><span class="p">(</span><span class="n">output</span><span class="o">.</span><span class="n">splitlines</span><span class="p">()[:</span><span class="mi">4</span><span class="p">])</span>
+<span class="nb">print</span><span class="p">(</span><span class="s1">'</span><span class="se">\n</span><span class="s1">'</span><span class="o">.</span><span class="n">join</span><span class="p">(</span><span class="n">output</span><span class="o">.</span><span class="n">splitlines</span><span class="p">()[:</span><span class="mi">4</span><span class="p">]))</span>
</pre></div>
</div>
</div>
@@ -722,16 +739,19 @@ Printf("EXAMPLE_MASSLOSS %30.12e %g %g %g %d\n",
);
to grid_options
Creating and loading custom logging functionality
-Running binary_c M_1 10
+Running binary_c M_1 10 api_log_filename_prefix /tmp/binary_c_python/notebooks/notebook_individual_systems
Cleaning up the custom logging stuff. type: single
-Removed /tmp/binary_c_python/custom_logging/libcustom_logging_eac2dfc438a14e5a9f5be98b1b6b4294.so
-['EXAMPLE_MASSLOSS 0.000000000000e+00 10 0 10 1', 'EXAMPLE_MASSLOSS 0.000000000000e+00 10 10 10 1', 'EXAMPLE_MASSLOSS 1.000000000000e-06 10 10 10 1', 'EXAMPLE_MASSLOSS 2.000000000000e-06 10 10 10 1']
+Removed /tmp/binary_c_python/custom_logging/libcustom_logging_8967553693ac4e11a49c42d4eef773e8.so
+EXAMPLE_MASSLOSS 0.000000000000e+00 10 0 10 1
+EXAMPLE_MASSLOSS 0.000000000000e+00 10 10 10 1
+EXAMPLE_MASSLOSS 1.000000000000e-06 10 10 10 1
+EXAMPLE_MASSLOSS 2.000000000000e-06 10 10 10 1
</pre></div></div>
</div>
<p>Lastly we can add a parse_function to handle parsing the output again.</p>
<p>Because the parse_function will now be part of the population object, it can access information of the object. We need to make a new parse function that is fit for an object: we the arguments now need to be (self, output). Returning the data is useful when running evolve_single(), but won’t be used in a population evolution.</p>
<div class="nbinput nblast docutils container">
-<div class="prompt highlight-none notranslate"><div class="highlight"><pre><span></span>[14]:
+<div class="prompt highlight-none notranslate"><div class="highlight"><pre><span></span>[11]:
</pre></div>
</div>
<div class="input_area highlight-ipython3 notranslate"><div class="highlight"><pre>
@@ -781,13 +801,14 @@ Removed /tmp/binary_c_python/custom_logging/libcustom_logging_eac2dfc438a14e5a9f
</div>
</div>
<div class="nbinput docutils container">
-<div class="prompt highlight-none notranslate"><div class="highlight"><pre><span></span>[15]:
+<div class="prompt highlight-none notranslate"><div class="highlight"><pre><span></span>[12]:
</pre></div>
</div>
<div class="input_area highlight-ipython3 notranslate"><div class="highlight"><pre>
<span></span><span class="n">example_pop</span><span class="o">.</span><span class="n">set</span><span class="p">(</span>
<span class="n">parse_function</span><span class="o">=</span><span class="n">object_parse_function</span><span class="p">,</span>
- <span class="n">output_dir</span><span class="o">=</span><span class="s1">'/tmp/'</span>
+ <span class="n">output_dir</span><span class="o">=</span><span class="n">TMP_DIR</span><span class="p">,</span>
+ <span class="n">api_log_filename_prefix</span><span class="o">=</span><span class="n">TMP_DIR</span>
<span class="p">)</span>
<span class="n">output</span> <span class="o">=</span> <span class="n">example_pop</span><span class="o">.</span><span class="n">evolve_single</span><span class="p">()</span>
<span class="nb">print</span><span class="p">(</span><span class="n">output</span><span class="p">[:</span><span class="mi">4</span><span class="p">])</span>
@@ -805,12 +826,13 @@ Removed /tmp/binary_c_python/custom_logging/libcustom_logging_eac2dfc438a14e5a9f
</div>
<div class="output_area docutils container">
<div class="highlight"><pre>
-adding: parse_function=<function object_parse_function at 0x7f9265091598> to grid_options
-<<<< Warning: Key does not match previously known parameter: adding: output_dir=/tmp/ to custom_options >>>>
+adding: parse_function=<function object_parse_function at 0x7fb4d41ebbf8> to grid_options
+<<<< Warning: Key does not match previously known parameter: adding: output_dir=/tmp/binary_c_python/notebooks/notebook_individual_systems to custom_options >>>>
+adding: api_log_filename_prefix=/tmp/binary_c_python/notebooks/notebook_individual_systems to BSE_options
Creating and loading custom logging functionality
-Running binary_c M_1 10
+Running binary_c M_1 10 api_log_filename_prefix /tmp/binary_c_python/notebooks/notebook_individual_systems
Cleaning up the custom logging stuff. type: single
-Removed /tmp/binary_c_python/custom_logging/libcustom_logging_e9c2bec7f15541eb847fc6013e48e7ed.so
+Removed /tmp/binary_c_python/custom_logging/libcustom_logging_5d7779e8190e4b79b10c7e6a44cb0e7e.so
[['time', 'mass', 'initial_mass', 'stellar_type'], [0.0, 10.0, 0.0, 10.0, 1.0], [0.0, 10.0, 10.0, 10.0, 1.0], [1e-06, 10.0, 10.0, 10.0, 1.0]]
dict_keys(['time', 'mass', 'initial_mass', 'stellar_type'])
</pre></div></div>
@@ -823,7 +845,7 @@ dict_keys(['time', 'mass', 'initial_mass', 'stellar_
<p>for more details on this API function see <code class="docutils literal notranslate"><span class="pre">notebook_api_functions</span></code></p>
<p>First we must construct the argument string that we pass to binary_c</p>
<div class="nbinput docutils container">
-<div class="prompt highlight-none notranslate"><div class="highlight"><pre><span></span>[16]:
+<div class="prompt highlight-none notranslate"><div class="highlight"><pre><span></span>[13]:
</pre></div>
</div>
<div class="input_area highlight-ipython3 notranslate"><div class="highlight"><pre>
@@ -835,10 +857,11 @@ dict_keys(['time', 'mass', 'initial_mass', 'stellar_
<span class="n">eccentricity</span> <span class="o">=</span> <span class="mf">0.0</span>
<span class="n">metallicity</span> <span class="o">=</span> <span class="mf">0.02</span>
<span class="n">max_evolution_time</span> <span class="o">=</span> <span class="mi">15000</span> <span class="c1"># Myr. You need to include this argument.</span>
+<span class="n">api_log_filename_prefix</span> <span class="o">=</span> <span class="n">TMP_DIR</span>
<span class="c1"># Here we set up the argument string that is passed to the bindings</span>
<span class="n">argstring</span> <span class="o">=</span> <span class="s2">"""</span>
-<span class="s2">binary_c M_1 </span><span class="si">{M_1}</span><span class="s2"> M_2 </span><span class="si">{M_2}</span><span class="s2"> separation </span><span class="si">{separation}</span><span class="s2"> orbital_period </span><span class="si">{orbital_period}</span><span class="s2"> eccentricity </span><span class="si">{eccentricity}</span><span class="s2"> metallicity </span><span class="si">{metallicity}</span><span class="s2"> max_evolution_time </span><span class="si">{max_evolution_time}</span><span class="s2"></span>
+<span class="s2">binary_c M_1 </span><span class="si">{M_1}</span><span class="s2"> M_2 </span><span class="si">{M_2}</span><span class="s2"> separation </span><span class="si">{separation}</span><span class="s2"> orbital_period </span><span class="si">{orbital_period}</span><span class="s2"> eccentricity </span><span class="si">{eccentricity}</span><span class="s2"> metallicity </span><span class="si">{metallicity}</span><span class="s2"> max_evolution_time </span><span class="si">{max_evolution_time}</span><span class="s2"> api_log_filename_prefix </span><span class="si">{api_log_filename_prefix}</span><span class="s2"></span>
<span class="s2">"""</span><span class="o">.</span><span class="n">format</span><span class="p">(</span>
<span class="n">M_1</span><span class="o">=</span><span class="n">M_1</span><span class="p">,</span>
<span class="n">M_2</span><span class="o">=</span><span class="n">M_2</span><span class="p">,</span>
@@ -847,6 +870,7 @@ dict_keys(['time', 'mass', 'initial_mass', 'stellar_
<span class="n">eccentricity</span><span class="o">=</span><span class="n">eccentricity</span><span class="p">,</span>
<span class="n">metallicity</span><span class="o">=</span><span class="n">metallicity</span><span class="p">,</span>
<span class="n">max_evolution_time</span><span class="o">=</span><span class="n">max_evolution_time</span><span class="p">,</span>
+ <span class="n">api_log_filename_prefix</span><span class="o">=</span><span class="n">TMP_DIR</span>
<span class="p">)</span><span class="o">.</span><span class="n">strip</span><span class="p">()</span>
<span class="kn">from</span> <span class="nn">binarycpython</span> <span class="kn">import</span> <span class="n">_binary_c_bindings</span>
@@ -861,7 +885,7 @@ dict_keys(['time', 'mass', 'initial_mass', 'stellar_
</div>
<div class="output_area docutils container">
<div class="highlight"><pre>
-SINGLE_STAR_LIFETIME 15 14.2383
+SINGLE_STAR_LIFETIME 15 14.9947
</pre></div></div>
</div>
@@ -903,9 +927,9 @@ SINGLE_STAR_LIFETIME 15 14.2383
provided by <a href="https://readthedocs.org">Read the Docs</a>.
<br><br>
-Generated on binarycpython git branch: development_version/2.1.7 git revision b3e29831acaa0f53ec69dc9f97f9d49b48d0c6c9 url: <a href="https://gitlab.eps.surrey.ac.uk/ri0005/binary_c-python/-/tree/development_version/2.1.7">git url</a>.
+Generated on binarycpython git branch: master git revision cac51a6dc71daeeb943b70d5598350ab43901299 url: <a href="https://gitlab.eps.surrey.ac.uk/ri0005/binary_c-python/-/tree/master">git url</a>.
<br><br>
-Using binary_c with bit branch branch_david: git revision: "6101:20210807:c5232be5c" url: <a href="https://gitlab.eps.surrey.ac.uk/ri0005/binary_c/-/tree/branch_david">git url</a>.
+Using binary_c with bit branch branch_david: git revision: "6162:20210825:093caf0e9" url: <a href="https://gitlab.eps.surrey.ac.uk/ri0005/binary_c/-/tree/branch_david">git url</a>.
diff --git a/docs/build/html/notebook_individual_systems.ipynb b/docs/build/html/notebook_individual_systems.ipynb
index 19c2d29fbd316324eb39a361e897be2b835955e8..21d49016f3b2826d6f9d5ec87a1f6d8bb18df7af 100644
--- a/docs/build/html/notebook_individual_systems.ipynb
+++ b/docs/build/html/notebook_individual_systems.ipynb
@@ -28,6 +28,18 @@
{
"cell_type": "code",
"execution_count": 1,
+ "id": "e32dcdee",
+ "metadata": {},
+ "outputs": [],
+ "source": [
+ "import os\n",
+ "from binarycpython.utils.functions import temp_dir\n",
+ "TMP_DIR = temp_dir(\"notebooks\", \"notebook_individual_systems\")"
+ ]
+ },
+ {
+ "cell_type": "code",
+ "execution_count": 2,
"id": "425efed3-d8e3-432d-829e-41d8ebe05162",
"metadata": {},
"outputs": [],
@@ -38,7 +50,7 @@
},
{
"cell_type": "code",
- "execution_count": 2,
+ "execution_count": 3,
"id": "b2abab48-433d-4936-8434-14804c52c9f6",
"metadata": {},
"outputs": [
@@ -46,7 +58,7 @@
"name": "stdout",
"output_type": "stream",
"text": [
- "SINGLE_STAR_LIFETIME 1 12462\n",
+ "SINGLE_STAR_LIFETIME 1 12461.9\n",
"\n"
]
}
@@ -66,7 +78,7 @@
},
{
"cell_type": "code",
- "execution_count": 3,
+ "execution_count": 4,
"id": "029fc3f2-f09a-49af-a32b-248505738f2e",
"metadata": {},
"outputs": [
@@ -74,24 +86,25 @@
"name": "stdout",
"output_type": "stream",
"text": [
- " TIME M1 M2 K1 K2 SEP ECC R1/ROL1 R2/ROL2 TYPE RANDOM_SEED=67365 RANDOM_COUNT=0\n",
- " 0.0000 1.000 0.000 1 15 -1 -1.00 0.000 0.000 \"INITIAL \"\n",
- " 11003.1302 1.000 0.000 2 15 -1 -1.00 0.000 0.000 \"OFF_MS\"\n",
- " 11003.1302 1.000 0.000 2 15 -1 -1.00 0.000 0.000 \"TYPE_CHNGE\"\n",
- " 11582.2424 1.000 0.000 3 15 -1 -1.00 0.000 0.000 \"TYPE_CHNGE\"\n",
- " 12325.1085 0.817 0.000 4 15 -1 -1.00 0.000 0.000 \"TYPE_CHNGE\"\n",
- " 12457.1300 0.783 0.000 5 15 -1 -1.00 0.000 0.000 \"TYPE_CHNGE\"\n",
- " 12460.8955 0.774 0.000 6 15 -1 -1.00 0.000 0.000 \"TYPE_CHNGE\"\n",
- " 12460.8955 0.774 0.000 6 15 -1 -1.00 0.000 0.000 \"shrinkAGB\"\n",
- " 12461.9514 0.523 0.000 11 15 -1 -1.00 0.000 0.000 \"TYPE_CHNGE\"\n",
- " 15000.0000 0.523 0.000 11 15 -1 -1.00 0.000 0.000 \"MAX_TIME\"\n",
+ " TIME M1 M2 K1 K2 SEP PER ECC R1/ROL1 R2/ROL2 TYPE RANDOM_SEED=17089 RANDOM_COUNT=0\n",
+ " 0.0000 1.000 0.000 1 15 -1 -1 -1.00 0.000 0.000 \"INITIAL \"\n",
+ " 11003.1302 1.000 0.000 2 15 -1 -1 -1.00 0.000 0.000 \"OFF_MS\"\n",
+ " 11003.1302 1.000 0.000 2 15 -1 -1 -1.00 0.000 0.000 \"TYPE_CHNGE\"\n",
+ " 11582.2424 1.000 0.000 3 15 -1 -1 -1.00 0.000 0.000 \"TYPE_CHNGE\"\n",
+ " 12325.1085 0.817 0.000 4 15 -1 -1 -1.00 0.000 0.000 \"TYPE_CHNGE\"\n",
+ " 12457.1301 0.783 0.000 5 15 -1 -1 -1.00 0.000 0.000 \"TYPE_CHNGE\"\n",
+ " 12460.9983 0.716 0.000 6 15 -1 -1 -1.00 0.000 0.000 \"TYPE_CHNGE\"\n",
+ " 12460.9983 0.716 0.000 6 15 -1 -1 -1.00 0.000 0.000 \"shrinkAGB\"\n",
+ " 12461.9458 0.518 0.000 11 15 -1 -1 -1.00 0.000 0.000 \"TYPE_CHNGE\"\n",
+ " 15000.0000 0.518 0.000 11 15 -1 -1 -1.00 0.000 0.000 \"MAX_TIME\"\n",
"\n"
]
}
],
"source": [
- "output = run_system(M_1=1, log_filename='/tmp/test_logfile.txt')\n",
- "with open('/tmp/test_logfile.txt', 'r') as f:\n",
+ "log_filename = os.path.join(TMP_DIR, 'test_logfile.txt')\n",
+ "output = run_system(M_1=1, log_filename=log_filename, api_log_filename_prefix=TMP_DIR)\n",
+ "with open(log_filename, 'r') as f:\n",
" print(f.read())"
]
},
@@ -105,7 +118,7 @@
},
{
"cell_type": "code",
- "execution_count": 6,
+ "execution_count": 5,
"id": "e6a23b55-ca42-440d-83ac-e76a24a83a67",
"metadata": {
"tags": []
@@ -115,7 +128,10 @@
"name": "stdout",
"output_type": "stream",
"text": [
- "['EXAMPLE_MASSLOSS 0.000000000000e+00 1 1 1', 'EXAMPLE_MASSLOSS 0.000000000000e+00 1 1 1', 'EXAMPLE_MASSLOSS 1.000000000000e-06 1 1 1', 'EXAMPLE_MASSLOSS 2.000000000000e-06 1 1 1']\n"
+ "EXAMPLE_MASSLOSS 0.000000000000e+00 1 1 1\n",
+ "EXAMPLE_MASSLOSS 0.000000000000e+00 1 1 1\n",
+ "EXAMPLE_MASSLOSS 1.000000000000e-06 1 1 1\n",
+ "EXAMPLE_MASSLOSS 2.000000000000e-06 1 1 1\n"
]
}
],
@@ -137,8 +153,8 @@
"# Generate entire shared lib code around logging lines\n",
"custom_logging_code = binary_c_log_code(custom_logging_print_statement)\n",
"\n",
- "output = run_system(M_1=1, custom_logging_code=custom_logging_code)\n",
- "print(output.splitlines()[:4])"
+ "output = run_system(M_1=1, custom_logging_code=custom_logging_code, api_log_filename_prefix=TMP_DIR)\n",
+ "print('\\n'.join(output.splitlines()[:4]))"
]
},
{
@@ -151,7 +167,7 @@
},
{
"cell_type": "code",
- "execution_count": 7,
+ "execution_count": 6,
"id": "3822721f-217a-495b-962e-d57137b9e290",
"metadata": {},
"outputs": [
@@ -201,7 +217,7 @@
},
{
"cell_type": "code",
- "execution_count": 8,
+ "execution_count": 7,
"id": "654a07ed-2a88-46ff-9da0-b7759580f9f3",
"metadata": {},
"outputs": [
@@ -216,13 +232,13 @@
"4 2e-06 1 1 1\n",
"5 3e-06 1 1 1\n",
"... ... ... ... ...\n",
- "1612 12461.8 0.577754 1 6\n",
- "1613 12462 0.522806 1 11\n",
- "1614 13462 0.522806 1 11\n",
- "1615 14462 0.522806 1 11\n",
- "1616 15000 0.522806 1 11\n",
+ "1617 12461.8 0.546683 1 6\n",
+ "1618 12461.9 0.517749 1 11\n",
+ "1619 13461.9 0.517749 1 11\n",
+ "1620 14461.9 0.517749 1 11\n",
+ "1621 15000 0.517749 1 11\n",
"\n",
- "[1616 rows x 4 columns]\n"
+ "[1621 rows x 4 columns]\n"
]
}
],
@@ -252,7 +268,7 @@
},
{
"cell_type": "code",
- "execution_count": 9,
+ "execution_count": 8,
"id": "4a98ffca-1b72-4bb8-8df1-3bf3187d882f",
"metadata": {},
"outputs": [],
@@ -271,7 +287,7 @@
},
{
"cell_type": "code",
- "execution_count": 10,
+ "execution_count": 9,
"id": "bff1cc2e-6b32-4ba0-879f-879ffbabd223",
"metadata": {},
"outputs": [
@@ -279,11 +295,12 @@
"name": "stdout",
"output_type": "stream",
"text": [
+ "adding: api_log_filename_prefix=/tmp/binary_c_python/notebooks/notebook_individual_systems to BSE_options\n",
"adding: M_1=10 to BSE_options\n",
"Creating and loading custom logging functionality\n",
- "Running binary_c M_1 10\n",
+ "Running binary_c M_1 10 api_log_filename_prefix /tmp/binary_c_python/notebooks/notebook_individual_systems\n",
"Cleaning up the custom logging stuff. type: single\n",
- "SINGLE_STAR_LIFETIME 10 27.7358\n",
+ "SINGLE_STAR_LIFETIME 10 28.4838\n",
"\n"
]
}
@@ -294,7 +311,8 @@
"\n",
"# Set some parameters\n",
"example_pop.set(\n",
- " verbosity=1\n",
+ " verbosity=1,\n",
+ " api_log_filename_prefix=TMP_DIR\n",
")\n",
"example_pop.set(\n",
" M_1=10\n",
@@ -315,7 +333,7 @@
},
{
"cell_type": "code",
- "execution_count": 13,
+ "execution_count": 10,
"id": "dd748bab-b57e-4129-8350-9ea11fa179d0",
"metadata": {
"scrolled": true,
@@ -338,10 +356,13 @@
");\n",
" to grid_options\n",
"Creating and loading custom logging functionality\n",
- "Running binary_c M_1 10\n",
+ "Running binary_c M_1 10 api_log_filename_prefix /tmp/binary_c_python/notebooks/notebook_individual_systems\n",
"Cleaning up the custom logging stuff. type: single\n",
- "Removed /tmp/binary_c_python/custom_logging/libcustom_logging_eac2dfc438a14e5a9f5be98b1b6b4294.so\n",
- "['EXAMPLE_MASSLOSS 0.000000000000e+00 10 0 10 1', 'EXAMPLE_MASSLOSS 0.000000000000e+00 10 10 10 1', 'EXAMPLE_MASSLOSS 1.000000000000e-06 10 10 10 1', 'EXAMPLE_MASSLOSS 2.000000000000e-06 10 10 10 1']\n"
+ "Removed /tmp/binary_c_python/custom_logging/libcustom_logging_8967553693ac4e11a49c42d4eef773e8.so\n",
+ "EXAMPLE_MASSLOSS 0.000000000000e+00 10 0 10 1\n",
+ "EXAMPLE_MASSLOSS 0.000000000000e+00 10 10 10 1\n",
+ "EXAMPLE_MASSLOSS 1.000000000000e-06 10 10 10 1\n",
+ "EXAMPLE_MASSLOSS 2.000000000000e-06 10 10 10 1\n"
]
}
],
@@ -362,7 +383,7 @@
"\n",
"# get output and print\n",
"output = example_pop.evolve_single()\n",
- "print(output.splitlines()[:4])"
+ "print('\\n'.join(output.splitlines()[:4]))"
]
},
{
@@ -377,7 +398,7 @@
},
{
"cell_type": "code",
- "execution_count": 14,
+ "execution_count": 11,
"id": "fec39154-cce6-438c-8c2c-509d76b00f34",
"metadata": {},
"outputs": [],
@@ -428,7 +449,7 @@
},
{
"cell_type": "code",
- "execution_count": 15,
+ "execution_count": 12,
"id": "57347512-fd4a-434b-b13c-5e6dbd3ac415",
"metadata": {
"scrolled": true,
@@ -439,12 +460,13 @@
"name": "stdout",
"output_type": "stream",
"text": [
- "adding: parse_function=<function object_parse_function at 0x7f9265091598> to grid_options\n",
- "<<<< Warning: Key does not match previously known parameter: adding: output_dir=/tmp/ to custom_options >>>>\n",
+ "adding: parse_function=<function object_parse_function at 0x7fb4d41ebbf8> to grid_options\n",
+ "<<<< Warning: Key does not match previously known parameter: adding: output_dir=/tmp/binary_c_python/notebooks/notebook_individual_systems to custom_options >>>>\n",
+ "adding: api_log_filename_prefix=/tmp/binary_c_python/notebooks/notebook_individual_systems to BSE_options\n",
"Creating and loading custom logging functionality\n",
- "Running binary_c M_1 10\n",
+ "Running binary_c M_1 10 api_log_filename_prefix /tmp/binary_c_python/notebooks/notebook_individual_systems\n",
"Cleaning up the custom logging stuff. type: single\n",
- "Removed /tmp/binary_c_python/custom_logging/libcustom_logging_e9c2bec7f15541eb847fc6013e48e7ed.so\n",
+ "Removed /tmp/binary_c_python/custom_logging/libcustom_logging_5d7779e8190e4b79b10c7e6a44cb0e7e.so\n",
"[['time', 'mass', 'initial_mass', 'stellar_type'], [0.0, 10.0, 0.0, 10.0, 1.0], [0.0, 10.0, 10.0, 10.0, 1.0], [1e-06, 10.0, 10.0, 10.0, 1.0]]\n",
"dict_keys(['time', 'mass', 'initial_mass', 'stellar_type'])\n"
]
@@ -453,7 +475,8 @@
"source": [
"example_pop.set(\n",
" parse_function=object_parse_function,\n",
- " output_dir='/tmp/'\n",
+ " output_dir=TMP_DIR,\n",
+ " api_log_filename_prefix=TMP_DIR\n",
")\n",
"output = example_pop.evolve_single()\n",
"print(output[:4])\n",
@@ -488,7 +511,7 @@
},
{
"cell_type": "code",
- "execution_count": 16,
+ "execution_count": 13,
"id": "ec48125c-6bf5-48f4-9357-8261800b5d8b",
"metadata": {},
"outputs": [
@@ -496,7 +519,7 @@
"name": "stdout",
"output_type": "stream",
"text": [
- "SINGLE_STAR_LIFETIME 15 14.2383\n",
+ "SINGLE_STAR_LIFETIME 15 14.9947\n",
"\n"
]
}
@@ -510,10 +533,11 @@
"eccentricity = 0.0\n",
"metallicity = 0.02\n",
"max_evolution_time = 15000 # Myr. You need to include this argument.\n",
+ "api_log_filename_prefix = TMP_DIR\n",
"\n",
"# Here we set up the argument string that is passed to the bindings\n",
"argstring = \"\"\"\n",
- "binary_c M_1 {M_1} M_2 {M_2} separation {separation} orbital_period {orbital_period} eccentricity {eccentricity} metallicity {metallicity} max_evolution_time {max_evolution_time}\n",
+ "binary_c M_1 {M_1} M_2 {M_2} separation {separation} orbital_period {orbital_period} eccentricity {eccentricity} metallicity {metallicity} max_evolution_time {max_evolution_time} api_log_filename_prefix {api_log_filename_prefix}\n",
"\"\"\".format(\n",
" M_1=M_1,\n",
" M_2=M_2,\n",
@@ -522,6 +546,7 @@
" eccentricity=eccentricity,\n",
" metallicity=metallicity,\n",
" max_evolution_time=max_evolution_time,\n",
+ " api_log_filename_prefix=TMP_DIR\n",
").strip()\n",
"\n",
"from binarycpython import _binary_c_bindings\n",
diff --git a/docs/build/html/notebook_population.html b/docs/build/html/notebook_population.html
index 7f15a864fbcd2c023c33dbead6e262e14682b75d..5336a7fdf7894646019acf4276fba685e69c0b2a 100644
--- a/docs/build/html/notebook_population.html
+++ b/docs/build/html/notebook_population.html
@@ -464,10 +464,6 @@ div.rendered_html tbody tr:hover {
</pre></div>
</div>
</div>
-<ul class="simple">
-<li><p>running ensemble</p></li>
-<li><p>using M&S grid</p></li>
-</ul>
<div class="section" id="Setting-up-the-Population-object">
<h2>Setting up the Population object<a class="headerlink" href="#Setting-up-the-Population-object" title="Permalink to this headline">¶</a></h2>
<p>To set up and configure the population object we need to make an object instance of the <code class="docutils literal notranslate"><span class="pre">Population</span></code> object, and add configuration via the <code class="docutils literal notranslate"><span class="pre">.set()</span></code> function.</p>
@@ -679,7 +675,7 @@ add_grid_variable(name:str, longname:str, valuerange:Union[list, str], resolutio
</div>
<div class="input_area highlight-ipython3 notranslate"><div class="highlight"><pre>
<span></span><span class="c1"># Add grid variables</span>
-<span class="n">resolution</span> <span class="o">=</span> <span class="p">{</span><span class="s2">"M_1"</span><span class="p">:</span> <span class="mi">20</span><span class="p">,</span> <span class="s2">"q"</span><span class="p">:</span> <span class="mi">20</span><span class="p">,</span> <span class="s2">"per"</span><span class="p">:</span> <span class="mi">40</span><span class="p">}</span>
+<span class="n">resolution</span> <span class="o">=</span> <span class="p">{</span><span class="s2">"M_1"</span><span class="p">:</span> <span class="mi">20</span><span class="p">}</span>
<span class="c1"># Mass</span>
<span class="n">example_pop</span><span class="o">.</span><span class="n">add_grid_variable</span><span class="p">(</span>
@@ -1353,7 +1349,7 @@ time mass zams_mass probability radius stellar_type
<span class="p">)</span>
<span class="c1"># Add grid variables</span>
-<span class="n">resolution</span> <span class="o">=</span> <span class="p">{</span><span class="s2">"M_1"</span><span class="p">:</span> <span class="mi">5</span><span class="p">,</span> <span class="s2">"q"</span><span class="p">:</span> <span class="mi">5</span><span class="p">,</span> <span class="s2">"per"</span><span class="p">:</span> <span class="mi">5</span><span class="p">}</span>
+<span class="n">resolution</span> <span class="o">=</span> <span class="p">{</span><span class="s2">"M_1"</span><span class="p">:</span> <span class="mi">3</span><span class="p">,</span> <span class="s2">"q"</span><span class="p">:</span> <span class="mi">3</span><span class="p">,</span> <span class="s2">"per"</span><span class="p">:</span> <span class="mi">3</span><span class="p">}</span>
<span class="c1"># Mass</span>
<span class="n">example_pop</span><span class="o">.</span><span class="n">add_grid_variable</span><span class="p">(</span>
@@ -1546,9 +1542,9 @@ time mass_1 zams_mass_1 mass_2 zams_mass_2 stellar_type_1 prev_stellar_type_1 st
provided by <a href="https://readthedocs.org">Read the Docs</a>.
<br><br>
-Generated on binarycpython git branch: development_version/2.1.7 git revision b3e29831acaa0f53ec69dc9f97f9d49b48d0c6c9 url: <a href="https://gitlab.eps.surrey.ac.uk/ri0005/binary_c-python/-/tree/development_version/2.1.7">git url</a>.
+Generated on binarycpython git branch: master git revision cac51a6dc71daeeb943b70d5598350ab43901299 url: <a href="https://gitlab.eps.surrey.ac.uk/ri0005/binary_c-python/-/tree/master">git url</a>.
<br><br>
-Using binary_c with bit branch branch_david: git revision: "6101:20210807:c5232be5c" url: <a href="https://gitlab.eps.surrey.ac.uk/ri0005/binary_c/-/tree/branch_david">git url</a>.
+Using binary_c with bit branch branch_david: git revision: "6162:20210825:093caf0e9" url: <a href="https://gitlab.eps.surrey.ac.uk/ri0005/binary_c/-/tree/branch_david">git url</a>.
diff --git a/docs/build/html/notebook_population.ipynb b/docs/build/html/notebook_population.ipynb
index 56f3b153c23064e82863f188906d50243e795715..b6a37baa8d90a2f36c0fd19311548ed49e77f173 100644
--- a/docs/build/html/notebook_population.ipynb
+++ b/docs/build/html/notebook_population.ipynb
@@ -3,7 +3,9 @@
{
"cell_type": "markdown",
"id": "bbbaafbb-fd7d-4b73-a970-93506ba35d71",
- "metadata": {},
+ "metadata": {
+ "tags": []
+ },
"source": [
"# Running populations with binarycpython\n",
"This notebook will show you how to evolve a population of stars\n",
@@ -27,15 +29,6 @@
"# help(Population) # Uncomment to see the public functions of this object"
]
},
- {
- "cell_type": "markdown",
- "id": "a081ab23-7822-4971-aa82-991548534714",
- "metadata": {},
- "source": [
- "- running ensemble\n",
- "- using M&S grid"
- ]
- },
{
"cell_type": "markdown",
"id": "f268eff3-4e08-4f6b-8b59-f22dba4d2074",
@@ -329,7 +322,7 @@
],
"source": [
"# Add grid variables\n",
- "resolution = {\"M_1\": 20, \"q\": 20, \"per\": 40}\n",
+ "resolution = {\"M_1\": 20}\n",
"\n",
"# Mass\n",
"example_pop.add_grid_variable(\n",
@@ -1125,7 +1118,7 @@
")\n",
"\n",
"# Add grid variables\n",
- "resolution = {\"M_1\": 5, \"q\": 5, \"per\": 5}\n",
+ "resolution = {\"M_1\": 3, \"q\": 3, \"per\": 3}\n",
"\n",
"# Mass\n",
"example_pop.add_grid_variable(\n",
diff --git a/docs/build/html/objects.inv b/docs/build/html/objects.inv
index 6013907ab4e83abd0bf59ec0cc3ccf216fa3ba69..8ac1e328102c8f00b236d77c3d126f5b16f1b475 100644
Binary files a/docs/build/html/objects.inv and b/docs/build/html/objects.inv differ
diff --git a/docs/build/html/plot_functions.html b/docs/build/html/plot_functions.html
index c279c2da42f97c4d1e7c6f53ea021cbeefd1312d..119716b2cf74847f37c7544a4a48cc0430bc41f0 100644
--- a/docs/build/html/plot_functions.html
+++ b/docs/build/html/plot_functions.html
@@ -473,9 +473,9 @@ This is not included in all the plotting routines.</p></li>
provided by <a href="https://readthedocs.org">Read the Docs</a>.
<br><br>
-Generated on binarycpython git branch: development_version/2.1.7 git revision b3e29831acaa0f53ec69dc9f97f9d49b48d0c6c9 url: <a href="https://gitlab.eps.surrey.ac.uk/ri0005/binary_c-python/-/tree/development_version/2.1.7">git url</a>.
+Generated on binarycpython git branch: master git revision cac51a6dc71daeeb943b70d5598350ab43901299 url: <a href="https://gitlab.eps.surrey.ac.uk/ri0005/binary_c-python/-/tree/master">git url</a>.
<br><br>
-Using binary_c with bit branch branch_david: git revision: "6101:20210807:c5232be5c" url: <a href="https://gitlab.eps.surrey.ac.uk/ri0005/binary_c/-/tree/branch_david">git url</a>.
+Using binary_c with bit branch branch_david: git revision: "6162:20210825:093caf0e9" url: <a href="https://gitlab.eps.surrey.ac.uk/ri0005/binary_c/-/tree/branch_david">git url</a>.
diff --git a/docs/build/html/py-modindex.html b/docs/build/html/py-modindex.html
index 943827786f69a6b8218fd5099deee9d65ab6010a..cafb1a78624c8c019ed90550f9c2bc0b9a18f918 100644
--- a/docs/build/html/py-modindex.html
+++ b/docs/build/html/py-modindex.html
@@ -255,9 +255,9 @@
provided by <a href="https://readthedocs.org">Read the Docs</a>.
<br><br>
-Generated on binarycpython git branch: development_version/2.1.7 git revision b3e29831acaa0f53ec69dc9f97f9d49b48d0c6c9 url: <a href="https://gitlab.eps.surrey.ac.uk/ri0005/binary_c-python/-/tree/development_version/2.1.7">git url</a>.
+Generated on binarycpython git branch: master git revision cac51a6dc71daeeb943b70d5598350ab43901299 url: <a href="https://gitlab.eps.surrey.ac.uk/ri0005/binary_c-python/-/tree/master">git url</a>.
<br><br>
-Using binary_c with bit branch branch_david: git revision: "6101:20210807:c5232be5c" url: <a href="https://gitlab.eps.surrey.ac.uk/ri0005/binary_c/-/tree/branch_david">git url</a>.
+Using binary_c with bit branch branch_david: git revision: "6162:20210825:093caf0e9" url: <a href="https://gitlab.eps.surrey.ac.uk/ri0005/binary_c/-/tree/branch_david">git url</a>.
diff --git a/docs/build/html/readme_link.html b/docs/build/html/readme_link.html
index d21f3c957b4c1eef3e38a667adcdb840860b247a..27d15ae843e9e2f086f0c09aaf359f8e194550cc 100644
--- a/docs/build/html/readme_link.html
+++ b/docs/build/html/readme_link.html
@@ -206,7 +206,7 @@
<p>Test coverage:</p>
<a class="reference external image-reference" href="./badges/test_coverage.svg"><img alt="test coverage" src="_images/test_coverage.svg" /></a>
<p>Binary population synthesis code that interfaces with binary_c. Based on a original work by Jeff Andrews (can be found in old_solution/ directory). Updated and extended for Python3 by David Hendriks, Robert Izzard.</p>
-<p>The current release is version 0.4, make sure to use that version number when installing!</p>
+<p>The current release is version 0.9.1, make sure to use that version number when installing!</p>
<div class="section" id="requirements">
<h2>Requirements<a class="headerlink" href="#requirements" title="Permalink to this headline">¶</a></h2>
<p>To run this code you need to at least have installations of:</p>
@@ -334,9 +334,9 @@
provided by <a href="https://readthedocs.org">Read the Docs</a>.
<br><br>
-Generated on binarycpython git branch: development_version/2.1.7 git revision b3e29831acaa0f53ec69dc9f97f9d49b48d0c6c9 url: <a href="https://gitlab.eps.surrey.ac.uk/ri0005/binary_c-python/-/tree/development_version/2.1.7">git url</a>.
+Generated on binarycpython git branch: master git revision cac51a6dc71daeeb943b70d5598350ab43901299 url: <a href="https://gitlab.eps.surrey.ac.uk/ri0005/binary_c-python/-/tree/master">git url</a>.
<br><br>
-Using binary_c with bit branch branch_david: git revision: "6101:20210807:c5232be5c" url: <a href="https://gitlab.eps.surrey.ac.uk/ri0005/binary_c/-/tree/branch_david">git url</a>.
+Using binary_c with bit branch branch_david: git revision: "6162:20210825:093caf0e9" url: <a href="https://gitlab.eps.surrey.ac.uk/ri0005/binary_c/-/tree/branch_david">git url</a>.
diff --git a/docs/build/html/run_system_wrapper.html b/docs/build/html/run_system_wrapper.html
index 0367bfe4b7169523c0d35314472248372c9a5ea1..98017ad46588089035d4888e94feb4dcb8a35540 100644
--- a/docs/build/html/run_system_wrapper.html
+++ b/docs/build/html/run_system_wrapper.html
@@ -283,9 +283,9 @@ and returns what the parse_function returns</p>
provided by <a href="https://readthedocs.org">Read the Docs</a>.
<br><br>
-Generated on binarycpython git branch: development_version/2.1.7 git revision b3e29831acaa0f53ec69dc9f97f9d49b48d0c6c9 url: <a href="https://gitlab.eps.surrey.ac.uk/ri0005/binary_c-python/-/tree/development_version/2.1.7">git url</a>.
+Generated on binarycpython git branch: master git revision cac51a6dc71daeeb943b70d5598350ab43901299 url: <a href="https://gitlab.eps.surrey.ac.uk/ri0005/binary_c-python/-/tree/master">git url</a>.
<br><br>
-Using binary_c with bit branch branch_david: git revision: "6101:20210807:c5232be5c" url: <a href="https://gitlab.eps.surrey.ac.uk/ri0005/binary_c/-/tree/branch_david">git url</a>.
+Using binary_c with bit branch branch_david: git revision: "6162:20210825:093caf0e9" url: <a href="https://gitlab.eps.surrey.ac.uk/ri0005/binary_c/-/tree/branch_david">git url</a>.
diff --git a/docs/build/html/search.html b/docs/build/html/search.html
index 5f2db9ccd5bbc1af44b5fed9bdd4e934f84826ba..c131aef39e756d8d23fb95b6292fa5bcaf6278dd 100644
--- a/docs/build/html/search.html
+++ b/docs/build/html/search.html
@@ -194,9 +194,9 @@
provided by <a href="https://readthedocs.org">Read the Docs</a>.
<br><br>
-Generated on binarycpython git branch: development_version/2.1.7 git revision b3e29831acaa0f53ec69dc9f97f9d49b48d0c6c9 url: <a href="https://gitlab.eps.surrey.ac.uk/ri0005/binary_c-python/-/tree/development_version/2.1.7">git url</a>.
+Generated on binarycpython git branch: master git revision cac51a6dc71daeeb943b70d5598350ab43901299 url: <a href="https://gitlab.eps.surrey.ac.uk/ri0005/binary_c-python/-/tree/master">git url</a>.
<br><br>
-Using binary_c with bit branch branch_david: git revision: "6101:20210807:c5232be5c" url: <a href="https://gitlab.eps.surrey.ac.uk/ri0005/binary_c/-/tree/branch_david">git url</a>.
+Using binary_c with bit branch branch_david: git revision: "6162:20210825:093caf0e9" url: <a href="https://gitlab.eps.surrey.ac.uk/ri0005/binary_c/-/tree/branch_david">git url</a>.
diff --git a/docs/build/html/searchindex.js b/docs/build/html/searchindex.js
index c0a0e92d51f7536b650af1390ba8a4fea1eef96d..4d686578bbc3eaf4cf907a9b5ba1fbbf375a5f77 100644
--- a/docs/build/html/searchindex.js
+++ b/docs/build/html/searchindex.js
@@ -1 +1 @@
-Search.setIndex({docnames:["binary_c_parameters","custom_logging_functions","distribution_functions","example_notebooks","functions","grid","grid_options_defaults","grid_options_descriptions","hpc_functions","index","modules","notebook_api_functionality","notebook_custom_logging","notebook_extra_features","notebook_individual_systems","notebook_population","plot_functions","readme_link","run_system_wrapper","spacing_functions","stellar_types","useful_funcs"],envversion:{"sphinx.domains.c":2,"sphinx.domains.changeset":1,"sphinx.domains.citation":1,"sphinx.domains.cpp":3,"sphinx.domains.index":1,"sphinx.domains.javascript":2,"sphinx.domains.math":2,"sphinx.domains.python":2,"sphinx.domains.rst":2,"sphinx.domains.std":1,"sphinx.ext.todo":2,"sphinx.ext.viewcode":1,nbsphinx:3,sphinx:56},filenames:["binary_c_parameters.rst","custom_logging_functions.rst","distribution_functions.rst","example_notebooks.rst","functions.rst","grid.rst","grid_options_defaults.rst","grid_options_descriptions.rst","hpc_functions.rst","index.rst","modules.rst","notebook_api_functionality.ipynb","notebook_custom_logging.ipynb","notebook_extra_features.ipynb","notebook_individual_systems.ipynb","notebook_population.ipynb","plot_functions.rst","readme_link.rst","run_system_wrapper.rst","spacing_functions.rst","stellar_types.rst","useful_funcs.rst"],objects:{"binarycpython.utils":{custom_logging_functions:[1,0,0,"-"],distribution_functions:[2,0,0,"-"],functions:[4,0,0,"-"],grid:[5,0,0,"-"],grid_options_defaults:[6,0,0,"-"],hpc_functions:[8,0,0,"-"],plot_functions:[16,0,0,"-"],run_system_wrapper:[18,0,0,"-"],spacing_functions:[19,0,0,"-"],stellar_types:[20,0,0,"-"],useful_funcs:[21,0,0,"-"]},"binarycpython.utils.custom_logging_functions":{autogen_C_logging_code:[1,1,1,""],binary_c_log_code:[1,1,1,""],binary_c_write_log_code:[1,1,1,""],compile_shared_lib:[1,1,1,""],create_and_load_logging_function:[1,1,1,""],from_binary_c_config:[1,1,1,""],return_compilation_dict:[1,1,1,""]},"binarycpython.utils.distribution_functions":{"const":[2,1,1,""],Arenou2010_binary_fraction:[2,1,1,""],Izzard2012_period_distribution:[2,1,1,""],Kroupa2001:[2,1,1,""],Moe_di_Stefano_2017_multiplicity_fractions:[2,1,1,""],Moe_di_Stefano_2017_pdf:[2,1,1,""],build_q_table:[2,1,1,""],calc_P_integral:[2,1,1,""],calc_e_integral:[2,1,1,""],calc_total_probdens:[2,1,1,""],calculate_constants_three_part_powerlaw:[2,1,1,""],cosmic_SFH_madau_dickinson2014:[2,1,1,""],duquennoy1991:[2,1,1,""],fill_data:[2,1,1,""],flat:[2,1,1,""],flatsections:[2,1,1,""],gaussian:[2,1,1,""],gaussian_func:[2,1,1,""],gaussian_normalizing_const:[2,1,1,""],get_integration_constant_q:[2,1,1,""],get_max_multiplicity:[2,1,1,""],imf_chabrier2003:[2,1,1,""],imf_scalo1986:[2,1,1,""],imf_scalo1998:[2,1,1,""],imf_tinsley1980:[2,1,1,""],interpolate_in_mass_izzard2012:[2,1,1,""],ktg93:[2,1,1,""],linear_extrapolation_q:[2,1,1,""],merge_multiplicities:[2,1,1,""],normalize_dict:[2,1,1,""],number:[2,1,1,""],poisson:[2,1,1,""],powerlaw:[2,1,1,""],powerlaw_constant:[2,1,1,""],powerlaw_extrapolation_q:[2,1,1,""],prepare_dict:[2,1,1,""],raghavan2010_binary_fraction:[2,1,1,""],sana12:[2,1,1,""],set_opts:[2,1,1,""],three_part_powerlaw:[2,1,1,""]},"binarycpython.utils.functions":{BinaryCEncoder:[4,2,1,""],Capturing:[4,2,1,""],binarycDecoder:[4,2,1,""],binaryc_json_serializer:[4,1,1,""],call_binary_c_config:[4,1,1,""],catchtime:[4,2,1,""],convert_bytes:[4,1,1,""],count_keys_recursive:[4,1,1,""],create_arg_string:[4,1,1,""],create_hdf5:[4,1,1,""],custom_sort_dict:[4,1,1,""],example_parse_output:[4,1,1,""],extract_ensemble_json_from_string:[4,1,1,""],filter_arg_dict:[4,1,1,""],get_arg_keys:[4,1,1,""],get_defaults:[4,1,1,""],get_help:[4,1,1,""],get_help_all:[4,1,1,""],get_help_super:[4,1,1,""],get_moe_di_stefano_dataset:[4,1,1,""],get_size:[4,1,1,""],handle_ensemble_string_to_json:[4,1,1,""],imports:[4,1,1,""],inspect_dict:[4,1,1,""],is_capsule:[4,1,1,""],load_logfile:[4,1,1,""],make_build_text:[4,1,1,""],merge_dicts:[4,1,1,""],multiply_values_dict:[4,1,1,""],output_lines:[4,1,1,""],parse_binary_c_version_info:[4,1,1,""],recursive_change_key_to_float:[4,1,1,""],recursive_change_key_to_string:[4,1,1,""],remove_file:[4,1,1,""],return_binary_c_version_info:[4,1,1,""],subtract_dicts:[4,1,1,""],temp_dir:[4,1,1,""],update_dicts:[4,1,1,""],verbose_print:[4,1,1,""],write_binary_c_parameter_descriptions_to_rst_file:[4,1,1,""]},"binarycpython.utils.functions.BinaryCEncoder":{"default":[4,3,1,""]},"binarycpython.utils.functions.Capturing":{__enter__:[4,3,1,""],__exit__:[4,3,1,""]},"binarycpython.utils.functions.binarycDecoder":{decode:[4,3,1,""]},"binarycpython.utils.functions.catchtime":{__enter__:[4,3,1,""],__exit__:[4,3,1,""]},"binarycpython.utils.grid":{Population:[5,2,1,""]},"binarycpython.utils.grid.Population":{Moe_di_Stefano_2017:[5,3,1,""],add_grid_variable:[5,3,1,""],evolve:[5,3,1,""],evolve_single:[5,3,1,""],export_all_info:[5,3,1,""],format_ensemble_results:[5,3,1,""],parse_cmdline:[5,3,1,""],return_all_info:[5,3,1,""],return_binary_c_defaults:[5,3,1,""],return_binary_c_version_info:[5,3,1,""],return_population_settings:[5,3,1,""],set:[5,3,1,""],set_moe_di_stefano_settings:[5,3,1,""],write_binary_c_calls_to_file:[5,3,1,""]},"binarycpython.utils.grid_options_defaults":{grid_options_description_checker:[6,1,1,""],grid_options_help:[6,1,1,""],print_option_descriptions:[6,1,1,""],write_grid_options_to_rst_file:[6,1,1,""]},"binarycpython.utils.plot_functions":{color_by_index:[16,1,1,""],dummy:[16,1,1,""],parse_function_hr_diagram:[16,1,1,""],parse_function_masses:[16,1,1,""],parse_function_orbit:[16,1,1,""],plot_HR_diagram:[16,1,1,""],plot_masses:[16,1,1,""],plot_orbit:[16,1,1,""],plot_system:[16,1,1,""]},"binarycpython.utils.run_system_wrapper":{run_system:[18,1,1,""]},"binarycpython.utils.spacing_functions":{"const":[19,1,1,""]},"binarycpython.utils.useful_funcs":{calc_period_from_sep:[21,1,1,""],calc_sep_from_period:[21,1,1,""],maximum_mass_ratio_for_RLOF:[21,1,1,""],minimum_period_for_RLOF:[21,1,1,""],minimum_separation_for_RLOF:[21,1,1,""],ragb:[21,1,1,""],roche_lobe:[21,1,1,""],rzams:[21,1,1,""],zams_collision:[21,1,1,""]}},objnames:{"0":["py","module","Python module"],"1":["py","function","Python function"],"2":["py","class","Python class"],"3":["py","method","Python method"]},objtypes:{"0":"py:module","1":"py:function","2":"py:class","3":"py:method"},terms:{"000":14,"0000":14,"000000000000e":14,"0001":[11,21],"000116989":15,"000121486":15,"000150087":15,"000154349":15,"000157195":15,"000172877":15,"000211219":15,"00028381":15,"000381347":15,"000512406":15,"000610573":15,"000627913":15,"000688507":15,"0007":2,"000925128":15,"001":[0,11],"00124307":15,"00167028":15,"00224431":15,"00498":15,"005444573822104362":15,"00632092":11,"006827156705e":15,"007109286263e":15,"0073157281034221516":15,"009829948023831718":15,"013208238029791246":15,"01344":15,"0141":11,"0144107":15,"015033359333e":15,"0154":15,"017435498578e":15,"027099358410e":15,"041660877905e":12,"041662558619e":12,"041662560111e":12,"041662564579e":12,"04459e":15,"047074050271e":15,"05150046619238191":15,"05150046619238192":15,"05193":15,"054":2,"055645404546e":15,"0587":15,"069363482023e":15,"069567332611e":15,"069626478211e":15,"069627290216e":15,"07011e":15,"074084349384e":15,"075844624794e":15,"07671":15,"0820":[0,11],"08519":15,"08624781646269201":15,"0862478164626921":15,"087296558990e":15,"08861e":15,"08873e":15,"08msun":[0,11],"0902":[0,11],"09216":15,"0x7f163859d0c0":11,"0x7f9265091598":14,"0x7ff3bdf79620":15,"100":[0,2,11],"1000":7,"10328":15,"10417":15,"10433":15,"10446":15,"104706358826e":15,"1048014407228":15,"1085":14,"108751340926e":15,"11003":14,"112":15,"11282":15,"115":2,"11582":14,"117519147635e":15,"119":15,"12303":15,"12325":14,"12457":14,"12460":14,"12461":14,"12462":14,"125":[0,11,15],"12500":0,"126828648362e":15,"12e":[1,12,14,15],"1300":14,"1302":14,"13462":14,"1357":12,"13876":15,"13e3":[0,11],"1403":2,"14057":12,"14059":12,"14462":14,"146421815741e":15,"150":15,"15000":[0,11,12,14,15],"1506841305680684":15,"15343":15,"1564":15,"15854":15,"15875":15,"15msun":2,"1612":14,"1613":14,"1614":14,"1615":14,"1616":14,"1628444120":15,"1628444121":15,"170425790780e":15,"170770422321e":15,"170770599495e":15,"170775828562e":15,"171086983243e":15,"171108213270e":15,"172196856333e":15,"17639":15,"18838":15,"18914e":15,"190":0,"19314":12,"194842917007e":15,"1951":[0,11],"1972":[0,11],"1975":[0,11],"197x":[0,11],"1980":2,"1983":21,"1986":[0,2,11],"1989":[0,11],"1991":2,"1993":[0,11],"1996":21,"1998":[0,2,11],"1999":[0,11],"1ckzg0p9":[9,17],"1e2":[0,11],"1e9":[0,11],"200":[0,11],"2000":[0,11],"2001":2,"2002":[0,11],"2003":[0,2,11],"2004":[0,11],"2005":[0,11],"2009":[0,11],"2010":[0,2,7,11],"2012":[0,2,11],"2013":[0,11],"2014":[0,2,11],"2015":[0,11],"2016":[0,11],"2017":[0,7,11,15],"2018":[0,1,11],"2019":[0,11],"2020":[0,11],"2021":0,"20210807":0,"20484":15,"206771867883e":15,"20787":15,"21331":15,"21473":15,"21673":15,"2174":15,"21805":15,"21878":15,"218786094847e":15,"21892":15,"21893":15,"222715508467e":15,"22723621650191106":15,"22759":15,"230407246199e":15,"232906623449e":15,"234709":15,"23604":15,"2383":14,"2424":14,"24954e":15,"25294":15,"2535":15,"257":21,"25msun":[0,11],"27442":15,"27563":15,"27565":15,"27572":15,"27804":15,"278384712062e":15,"281":21,"28672":15,"29402e":15,"29444":15,"294870923827e":15,"29678":15,"2969346":2,"29746":15,"2983275843337705":15,"29864":15,"29942":15,"29977":15,"29994":15,"2a7732d03e594ef4b5dfe9051b41d9c0":15,"2msun":[0,11],"3000":[0,11],"30145":15,"30149":15,"30197":15,"3032":15,"30337":15,"30504":15,"30e4":[0,11],"31004":15,"315554923168e":15,"3177":15,"32047":15,"3205":15,"32641e":15,"33062":15,"33079":15,"33524":12,"337250536639e":15,"34071e":15,"34281":15,"34903":15,"34922":15,"34937":15,"350021848285e":15,"35209":15,"3552":15,"364277535630e":15,"3678":15,"3680f3882c0a449c944462abffea2447":15,"36979":15,"36m":11,"38004":15,"38063":12,"3836":15,"38403":15,"38887e":15,"3933":15,"3msun":2,"4000":0,"4046":15,"40513":15,"40745":15,"40749":15,"40935":15,"41074":15,"41264":15,"41295e":15,"42148e":15,"42212":15,"42238":15,"42375":15,"42msun":[0,11],"43925":15,"439623364590e":15,"4424":15,"446":12,"449960890183e":15,"44msun":[0,11],"4500":11,"45000000080":15,"4530":[12,14],"458869865939e":15,"459153942631e":15,"45msun":[0,11],"4603":15,"47276":15,"47961":15,"47976e":15,"48488":15,"4e3":[0,11],"500":[0,11],"5102526289471614":15,"513216011269e":15,"522806":14,"523":14,"525":15,"527722847382e":15,"52963":15,"53113":15,"53174":15,"53175":15,"53176":15,"53177":15,"53183":15,"53184":15,"5357":15,"53631":15,"53922":15,"556479830908e":15,"55924":15,"561265707015991":15,"56776":15,"5689":15,"571858031651e":15,"575":15,"577754":14,"59052":15,"59499":15,"5msun":[0,11],"600000":0,"60808":15,"6101":0,"61349":12,"6246354579925537":15,"62486":15,"625":0,"62517":15,"64419":15,"65097":15,"653200958306e":15,"67365":14,"687368550125e":15,"68933e":15,"693213405973e":15,"6944":0,"6e1":2,"6e5":[0,11],"6msun":[0,11],"70319":15,"70668e":15,"71025":15,"71288":15,"7197":15,"721374713429e":15,"723547465714e":15,"723570798020e":15,"72498e":[12,15],"72638":15,"726405299909e":15,"730":[12,15],"73221":15,"733614170983e":15,"733794947644e":15,"733865371895e":15,"7358":[11,12,14],"73856":15,"74037":12,"7431":15,"750574783854e":15,"753837732894e":15,"7619":0,"763":2,"764340254985e":15,"765535914728e":15,"765996194699e":15,"76647":15,"766606588165e":15,"768305081494e":15,"773581245005e":12,"774":14,"7797017097473145":15,"78096":15,"78125":0,"783":14,"78384":15,"79411e":15,"795":2,"797342083485e":15,"802132608769e":15,"80457":15,"806014211040e":15,"806123543037e":15,"807147339697e":15,"80msol":2,"81391":15,"8162e":15,"817":14,"8178":15,"81906":15,"82242e":15,"84162":15,"853070305680e":15,"85486":15,"862081089332e":15,"8628":15,"862942347290e":15,"863377990313e":15,"867655467480e":15,"878236827680e":12,"881529045940e":15,"88566":15,"8955":14,"917420996633e":15,"92267":12,"922967341481e":15,"931266944719e":15,"93135e":15,"933751523833e":15,"94027":15,"941017702765e":15,"9514":14,"9545065608702976":15,"9713":15,"97286e":15,"974759306305e":15,"97823":15,"9791":15,"980988739731e":15,"9863e":15,"990017992944e":15,"99198":12,"99255":15,"99283":15,"99471":15,"boolean":[0,4,5,7,11,16,21],"break":[0,11],"case":[0,4,7,11,15],"catch":[4,7,14,15],"char":7,"class":[4,5],"const":[2,5,15,19],"default":[0,1,2,4,5,6,7,11,12,13,15,18],"export":[4,5,15],"float":[0,2,4,11,13,14,19,21],"function":[0,1,2,3,5,6,7,8,9,10,12,16,17,18,19,21],"import":[4,5,11,12,13,14,15],"int":[0,1,2,4,5,6,7,11,15,19,21],"long":[0,4,5,7,11,15,20],"new":[0,2,4,5,11,14,15],"null":[0,4,11,12,13],"paczy\u0144ski":[0,11],"public":[6,9,15],"return":[1,2,4,5,6,7,11,13,14,15,16,18,19,21],"short":[0,11,20],"super":[0,11],"switch":[0,11],"throw":[9,17],"true":[0,4,5,6,7,11,13,15,16],"try":[0,9,11,14,15,17],"void":12,"while":[0,11],Added:15,Adding:[3,14],And:[6,9,17,21],But:14,Doing:15,For:[0,4,9,11,12,14,16,17],Gas:[0,11],Its:7,NOT:[0,11,18],Not:7,One:[0,11],Pms:16,That:[0,11],The:[0,1,2,3,4,5,7,9,11,12,13,14,15,16,17,18],Then:[4,9,17],There:[2,5,6,7,11,12,13,14,15,16],These:[4,7,11,15,16],Use:[0,5,11,15],Used:[0,7,11,16],Useful:[0,5,6,11,15],Uses:[0,11,19],Using:[3,9],Was:[0,11],Will:[0,4,5,11,15,18],With:6,__arg_begin:11,__attribute__:12,__enter__:4,__exit__:4,_actually_evolve_system:7,_binary_c_bind:[4,11,12,14,21],_binary_c_config_execut:7,_binary_c_dir:7,_binary_c_execut:7,_binary_c_shared_librari:7,_calculate_multiplicity_fract:15,_commandline_input:7,_count:7,_custom_logging_shared_library_fil:7,_end_time_evolut:7,_errors_exceed:7,_errors_found:7,_evolution_type_opt:7,_failed_count:7,_failed_prob:7,_failed_systems_error_cod:7,_generate_grid_cod:7,_grid_vari:7,_loaded_ms_data:7,_main_pid:7,_population_id:7,_probtot:7,_process_run_population_grid:7,_repeat:7,_set:5,_set_ms_grid:7,_start_time_evolut:7,_store_memaddr:7,_system_gener:7,_total_mass_run:7,_total_probability_weighted_mass_run:7,_total_starcount:7,_zero_prob_stars_skip:7,abat:[0,11],abbrevi:20,abl:11,about:[3,4,5,6,15,21],abov:[0,2,4,5,11,12,14,15],abridg:[11,12],absolut:[0,11],abund:[0,11],acceler:[0,11],accept:[4,11,15],access:[2,7,12,14,15],accord:[0,2,11],accordingli:[14,15],account:[0,7,11],accret:[0,11],accretion_limit_dynamical_multipli:[0,11],accretion_limit_eddington_lmms_multipli:[0,11],accretion_limit_eddington_steady_multipli:[0,11],accretion_limit_eddington_wd_to_remnant_multipli:[0,11],accretion_limit_thermal_multipli:[0,11],accretor:[0,11,21],act:[0,7,11,15],activ:[0,9,11,17],actual:[0,4,5,7,9,11,12,14,15,16,17],adam:[0,11],adapt:[0,11],add:[2,4,5,7,12,14,15,16,19,21],add_grid_vari:[5,15],added:[4,14],adding:[14,15],address:[1,7,11,12,21],admittedli:16,adress:[11,12,21],advis:12,affect:[0,11],after:[0,5,7,11,12,15],ag89:[0,11],again:[4,5,7,9,13,14,17],against:16,agb:[0,11],agb_3dup_algorithm:[0,11],agb_core_algorithm:[0,11],agb_core_algorithm_default:0,agb_core_algorithm_hurlei:0,agb_core_algorithm_karaka:0,agb_luminosity_algorithm:[0,11],agb_luminosity_algorithm_default:0,agb_luminosity_algorithm_hurlei:0,agb_luminosity_algorithm_karaka:0,agb_radius_algorithm:[0,11],agb_radius_algorithm_default:0,agb_radius_algorithm_hurlei:0,agb_radius_algorithm_karaka:0,agb_third_dredge_up_algorithm_default:0,agb_third_dredge_up_algorithm_hurlei:0,agb_third_dredge_up_algorithm_karaka:0,agb_third_dredge_up_algorithm_stancliff:0,age:[0,11],aging:[0,11],albedo:[0,11],algorithm:[9,11],algothim:[0,11],all:[0,1,2,4,5,6,7,9,10,11,13,14,15,16,17,18],all_info:5,alloc:11,allow:[0,2,4,7,11,12],allow_nan:4,along:[0,6,7],alpha:[0,11],alpha_c:[0,11],alphacb:[0,11],alreadi:[5,15],also:[0,3,4,5,6,9,11,12,15,17,21],altern:[0,7,11],alwai:[0,2,7,11],amanda:[0,11],amax:2,amin:2,amount:[0,4,5,6,7,11,15,19],amp:11,amt_cor:[7,15],analys:18,analyt:[5,15],analyz:14,andrew:[9,17],andronov:[0,11],angelou_lithium_cheb_decay_tim:[0,11],angelou_lithium_cheb_massfrac:[0,11],angelou_lithium_cheb_tim:[0,11],angelou_lithium_decay_funct:[0,11],angelou_lithium_decay_tim:[0,11],angelou_lithium_eagb_decay_tim:[0,11],angelou_lithium_eagb_massfrac:[0,11],angelou_lithium_eagb_tim:[0,11],angelou_lithium_gb_decay_tim:[0,11],angelou_lithium_gb_massfrac:[0,11],angelou_lithium_gb_tim:[0,11],angelou_lithium_hg_decay_tim:[0,11],angelou_lithium_hg_massfrac:[0,11],angelou_lithium_hg_tim:[0,11],angelou_lithium_lmms_decay_tim:[0,11],angelou_lithium_lmms_massfrac:[0,11],angelou_lithium_lmms_tim:[0,11],angelou_lithium_ms_decay_tim:[0,11],angelou_lithium_ms_massfrac:[0,11],angelou_lithium_ms_tim:[0,11],angelou_lithium_tpagb_decay_tim:[0,11],angelou_lithium_tpagb_massfrac:[0,11],angelou_lithium_tpagb_tim:[0,11],angelou_lithium_vrot_trigg:[0,11],angelou_lithium_vrotfrac_trigg:[0,11],angular:[0,11,16],ani:[0,2,4,5,9,11,14,15,17],anoth:[0,11],ansi:[0,11],anyth:[0,7,11,15],anywai:[5,14,15],anywher:[5,15],api:[0,3,4,9],api_log_filename_prefix:[0,11],append:[1,4,14],appli:[0,11],appropri:[0,7,11],approxim:[0,11],aren:[2,7],arenou2010_binary_fract:2,arg:[2,4,11,13,15,16],arg_dict:4,argopt:[0,11],argpair:[4,13],argstr:[11,12,14],argument:[0,2,4,5,7,11,14,15,18],argument_of_periastron:[0,11],argument_of_periastron_quadrupl:[0,11],argument_of_periastron_tripl:[0,11],around:[0,11,12,14],arrai:[2,4,7,14],artifici:[0,11],artificial_accretion_end_tim:[0,11],artificial_accretion_ignor:0,artificial_accretion_start_tim:[0,11],artificial_angular_momentum_accretion_r:[0,11],artificial_mass_accretion_r:[0,11],artificial_orbital_angular_momentum_accretion_r:[0,11],arxiv:[0,2,11],ask:[0,11,21],asplund:[0,11],assign:[5,15],assum:[0,11,16],ast871:[0,11],astronomi:[0,11],astropi:[9,16,17],atom:4,attempt:[4,5],aug:0,auto:[1,10],autogen_c_logging_cod:[1,12],automat:[0,1,6,9,11,12,17],avaibl:[9,17],avail:[0,4,7,11,12,15,16],avoid:11,awai:[0,11],axi:[0,11,16],b_1:[0,11],b_2:[0,11],b_3:[0,11],b_4:[0,11],b_inclination1:[0,11],b_inclination2:[0,11],b_inclination3:[0,11],b_inclination4:[0,11],back:[0,4,11],backward:[0,11],bagb:[0,11],barn:[0,11],base:[0,2,4,5,9,11,15,16,17,21],base_filenam:[5,15],basic:[5,15],batchmod:[0,11],beasor:[0,11],becaus:[0,2,5,7,9,11,14,17],becom:[0,1,2,4,11,12],been:[0,5,7,11,13],befor:[0,5,7,9,11,15,17],behaviour:[4,15,18],belczynski:[0,11],below:[0,3,7,11,12,15],berro:[0,11],bertolami:[0,11],best:[5,7,9,17],beta:[0,11],beta_reverse_nova:[0,11],beta_reverse_novae_geometri:0,better:[0,4,5,11,15],between:[0,2,11,19],bewar:[5,15],bh_belczynski:0,bh_fryer12_delai:0,bh_fryer12_rapid:0,bh_hurley2002:0,bh_prescript:[0,11],bh_spera2015:0,big:[0,7,11],biinari:15,bin:[0,9,11,17],binari:[2,5,7,9,11,14,15,16,17,21],binary_c2:[9,17],binary_c:[1,2,3,4,5,7,12,14,15,16,18],binary_c_api_funct:12,binary_c_cal:[5,15],binary_c_default:15,binary_c_grid_2a7732d03e594ef4b5dfe9051b41d9c0:15,binary_c_inline_config:1,binary_c_log_cod:[1,12,14],binary_c_macro:[0,11],binary_c_output:4,binary_c_paramet:[0,11,15],binary_c_python:[4,5,11,14,15],binary_c_task_:[0,11],binary_c_write_log_cod:1,binary_grid:[0,11],binary_star:21,binaryc:[1,4,13,18],binaryc_config:1,binaryc_json_seri:4,binarycdecod:4,binarycencod:4,binarycpython3:11,binarycpython:[1,2,3,4,5,6,9,16,17,18,19,21],binarygrid:15,bind:[0,11,12,14],birth:[0,11],bit:2,bivari:[0,11],black:[0,11],black_hol:0,bloecker:[0,11],blog:1,boltzman:16,boltzmann:[0,11],bondi:[0,11],bondi_hoyle_accretion_factor:[0,11],bool:[4,5,6,13,15,16],born:[0,11],bosswissam:4,both:[0,4,11,15],bottom:[0,11,15],bound:[2,19],boundari:2,brake:[0,11],branch:[0,4,11],branch_david:0,branchpoint:[5,15],breakup:[0,11],broken:[0,11],bse:[0,2,11,12,15],bse_opt:[5,14,15],bsf:[0,11],buffer:[0,11],build:[0,1,3,4,11],build_q_tabl:2,built:[0,1,4,9,13,17],burn:[0,11],busso:[0,11],bye:[0,11],c13_eff:[0,11],c5232be5c:0,c_auto_log:7,c_log:0,c_logging_cod:[7,12,14,15],calc_e_integr:2,calc_p_integr:2,calc_period_from_sep:21,calc_sep_from_period:[15,21],calc_total_probden:2,calcul:[0,2,4,5,7,11,15,21],calculate_constants_three_part_powerlaw:2,call:[0,1,4,5,7,11,13,14,15,16,18],call_binary_c_config:4,calls_filenam:15,can:[0,1,2,4,5,7,9,11,12,13,14,15,16,17,18],cannot:[5,12],canon:7,cap:[0,11],capsul:[1,4,11],captur:[0,4,11],carbon:[0,11],carbon_oxygen_white_dwarf:0,carlo:[0,7,11],carrasco:[0,11],carri:[0,11],cast:[4,13],catchtim:4,categor:11,categori:[11,15],categoris:4,caught:[4,14],caus:21,cbdisc:[0,11],cbdisc_albedo:[0,11],cbdisc_alpha:[0,11],cbdisc_eccentricity_pumping_dermin:0,cbdisc_eccentricity_pumping_method:[0,11],cbdisc_eccentricity_pumping_non:0,cbdisc_end_evolution_after_disc:[0,11],cbdisc_fail_ring_inside_separ:[0,11],cbdisc_gamma:[0,11],cbdisc_init_djdm:[0,11],cbdisc_init_dm:[0,11],cbdisc_inner_edge_strip:[0,11],cbdisc_inner_edge_stripping_timescal:[0,11],cbdisc_kappa:[0,11],cbdisc_mass_loss_constant_r:[0,11],cbdisc_mass_loss_fuv_multipli:[0,11],cbdisc_mass_loss_inner_l2_cross_multipli:[0,11],cbdisc_mass_loss_inner_viscous_accretion_method:[0,11],cbdisc_mass_loss_inner_viscous_accretion_method_equ:0,cbdisc_mass_loss_inner_viscous_accretion_method_gerosa_2015:0,cbdisc_mass_loss_inner_viscous_accretion_method_non:0,cbdisc_mass_loss_inner_viscous_accretion_method_young_clarke_2015:0,cbdisc_mass_loss_inner_viscous_angular_momentum_multipli:[0,11],cbdisc_mass_loss_inner_viscous_multipli:[0,11],cbdisc_mass_loss_ism_pressur:[0,11],cbdisc_mass_loss_ism_ram_pressure_multipli:[0,11],cbdisc_mass_loss_xray_multipli:[0,11],cbdisc_max_lifetim:[0,11],cbdisc_minimum_evaporation_timescal:[0,11],cbdisc_minimum_fr:[0,11],cbdisc_minimum_luminos:[0,11],cbdisc_minimum_mass:[0,11],cbdisc_no_wind_if_cbdisc:[0,11],cbdisc_outer_edge_strip:[0,11],cbdisc_outer_edge_stripping_timescal:[0,11],cbdisc_resonance_damp:[0,11],cbdisc_resonance_multipli:[0,11],cbdisc_torquef:[0,11],cbdisc_viscous_l2_coupl:[0,11],cbdisc_viscous_photoevaporative_coupl:[0,11],cbdisc_viscous_photoevaporative_coupling_inst:[0,11],cbdisc_viscous_photoevaporative_coupling_non:[0,11],cbdisc_viscous_photoevaporative_coupling_visc:[0,11],cee:[0,11],cell:[11,15],cemp:[0,11],cemp_cfe_minimum:[0,11],center:[5,15],central_object:[0,11],certain:[7,9,17],cf_amanda_log:[0,11],cflag:[9,17],chabrier:2,chandrasekhar:[0,11],chandrasekhar_mass:[0,11],chang:[0,1,2,4,5,6,7,9,11,12,15,17],chapter:[0,7,10],cheb:[0,11],check:[0,2,4,5,6,11,15,21],check_circular:4,chemic:[0,11],chen:[0,11],child:4,choic:[0,2,11,16],choos:[0,11,12,16],chose:14,chosen:[5,15],circular:[0,11],circumbinari:[0,11],circumstanti:[0,11],claei:[0,11],clark:[0,11],clean:[1,5,9,14,17],clean_up_custom_logging_fil:5,clear:4,clock:4,clone:[9,17],close:[0,11],cloud:[0,11],cls:4,cluster:8,cmdline:5,code:[0,1,5,6,9,11,12,14,15,16,17,18],collaps:[0,11],collapsar:[0,11],collect:21,collid:21,color:16,color_by_index:16,colour:[0,11],colour_log:[0,11],column:[14,15,16],column_nam:14,com:[1,4],combin:[1,4,5,7,12],combine_ensemble_with_thread_join:7,come:[2,9,17,19],comenv_bs:0,comenv_disc_angmom_fract:[0,11],comenv_disc_mass_fract:[0,11],comenv_ejection_spin_method:[0,11],comenv_ejection_spin_method_do_noth:[0,11],comenv_ejection_spin_method_sychron:[0,11],comenv_ejection_spin_method_synchron:0,comenv_merger_spin_method:[0,11],comenv_merger_spin_method_breakup:0,comenv_merger_spin_method_conserve_angmom:[0,11],comenv_merger_spin_method_conserve_omega:[0,11],comenv_merger_spin_method_specif:[0,11],comenv_ms_accret:[0,11],comenv_ms_accretion_fract:[0,11],comenv_ms_accretion_mass:[0,11],comenv_nandez2016:0,comenv_nelemans_tout:0,comenv_ns_accret:[0,11],comenv_ns_accretion_fract:[0,11],comenv_ns_accretion_mass:[0,11],comenv_post_eccentr:[0,11],comenv_prescript:[0,11],comenv_splitmass:[0,11],comenv_undef:0,command:[0,1,5,7,9,11,15,17],commandlin:15,comment:15,commit:4,common:[0,11,12,14,15],compact:15,companion:[0,11],compar:[0,7,11,15],compil:[1,9,12,15,17],compile_shared_lib:1,complet:15,complex:[5,7,12,15,16],compon:[4,16],comput:[0,8,11],condit:[5,12,15],condor:[5,7,8],condor_grid:5,config:[1,4,7,9,17],config_fil:1,configur:[2,5,14,15],conjunct:13,conserv:[0,11],consid:[0,1,2,4,5,7,11,16],constant:[0,2,11,16],construct:[0,1,11,14,15],contain:[0,1,2,4,5,6,7,8,9,10,11,13,14,15,16,17,18,19,20],content:[3,4,9,11],context:4,continu:[5,15],control:[0,11,15],convect:[0,11],converg:[0,11],convert:[2,4,5],convert_byt:4,cool:[0,11],copi:[0,5,11,21],core:[0,5,7,11,15,16],core_co:12,core_h:12,core_helium_burn:0,core_mass:[0,11,12],correct:[2,5,14,16,21],correctli:[9,14,16,17],correspond:16,corretor:[0,11],cosmic:2,cosmic_sfh_madau_dickinson2014:2,could:[0,4,11,15],count:[4,7],count_keys_recurs:4,counter:7,coupl:[0,11],cours:16,cover:13,coverag:[9,17],cowd:[0,11],cpu:[0,11],cpython:11,crap_paramet:[0,11],creat:[2,4,5,12,14,15],create_and_load_logging_funct:[1,12],create_arg_str:4,create_hdf5:4,creation:11,critic:[0,11],cross:[0,11],ctype:1,cuntz:[0,11],current:[0,4,9,11,12,17],custom:[0,1,3,4,5,7,9,11,14,15,16,18],custom_log:[5,7,14],custom_logging_cod:[1,12,14,18],custom_logging_func_memaddr:[7,11,12],custom_logging_funct:[7,9,10,12,14,15],custom_logging_info:5,custom_logging_memaddr:12,custom_logging_print_stat:14,custom_logging_stat:15,custom_opt:[5,14,15],custom_output_funct:12,custom_sort_dict:4,custom_tmp_dir:1,customis:16,cvode:[0,11],d20a4c74d20a43b881c0c9e5def5f76c:15,dai:[0,2,11,12,14,15,21],damp:[0,11],dat:[0,4,15],data:[0,4,5,7,11,14,15,18],data_dict:2,data_dir:[4,5,7,15],datadir:[5,15],datafram:[14,16],dataset:[4,15],date:5,david:[0,9,11,17],david_logging_funct:[0,11],dd7:[0,11],deactiv:[0,11],deal:[4,14],death:[0,11],debug:[0,7,11,15],decai:[0,11],decid:[0,4,11,12],decod:4,decreas:[0,11],deeper:[5,15],def:[14,15],default_to_metal:[0,11],defaultdict:4,defer:[0,11],defin:[0,1,2,5,11,16],definit:[1,21],degener:[0,11],degre:[0,11],delta_mcmin:[0,11],den:[0,11],densiti:2,depend:[0,2,9,11,16,17],deprec:[0,11],dermin:[0,11],describ:[0,2,7,11],descript:[0,2,4,7,9,10,11,13],design:[5,16],desir:[0,11],destruct:[5,15],detail:[0,4,11,14],detect:[0,11],determin:[0,5,11,12,15,21],deton:[0,11],dev:[0,11],develop:1,deviat:2,dewi:[0,11],dex:[0,11],diagnost:7,diagram:[0,11,16],dickonson:2,dict2:4,dict:[1,2,4,5,6,13,14,15,20],dict_1:4,dict_2:4,dict_kei:[13,14],dictionari:[1,2,3,4,5,6,7,15,16,20],did:[4,9,17],differ:[0,4,5,9,11,15,16,17],dimmer:[0,11],dir:[9,17],direct:[0,5,11],directli:[4,7,14],director:7,directori:[0,3,4,5,7,9,11,15,17],disabl:[0,11,15],disable_debug:[0,11],disable_end_log:[0,11],disable_ev:[0,11],disc:[0,11],disc_legacy_log:[0,11],disc_log2d:[0,11],disc_log:[0,11],disc_log_directori:[0,11],disc_log_dt:[0,11],disc_log_level_non:0,disc_log_level_norm:0,disc_log_level_normal_first_disc_onli:0,disc_log_level_subtimestep:0,disc_log_level_subtimestep_first_disc_onli:0,disc_n_monte_carlo_guess:[0,11],disc_stripping_timescale_infinit:0,disc_stripping_timescale_inst:0,disc_stripping_timescale_orbit:0,disc_stripping_timescale_visc:0,disc_timestep_factor:[0,11],discret:15,discs_circumbinary_from_comenv:[0,11],discs_circumbinary_from_wind:[0,11],disk:[0,5,11],dispers:[0,11],displai:[0,11],dist:[9,17],distefano:2,distribut:[0,2,5,8,11,15],distribution_funct:[9,10,15],divid:8,dlnm1:[5,15],dlog10per:15,dlogp:2,do_dry_run:7,doc:[4,6,9,15,17],doc_fetch:2,docstr:[9,14,16,17],document:[4,6,7,10,15],doe:[0,2,4,5,7,11,12,13,14,15,21],doesn:[5,7],doesnt:6,doing:[0,1,5,6,9,11,17],don:[2,4,7],done:[0,4,5,9,11,15,17],donor:[0,11,21],donor_limit_dynamical_multipli:[0,11],donor_limit_envelope_multipli:[0,11],donor_limit_thermal_multipli:[0,11],donor_rate_algorithm_bs:0,donor_rate_algorithm_claeys2014:0,dont:11,doubl:[12,15],down:15,dphasevol:[5,15],dr2:[0,11],dr3:[0,11],drai:[0,11],dredg:[0,11],drop:14,dry:7,dstep:2,dt_limit:13,dtfac:[0,11],dtlimit:4,dtm:[1,12,15],due:[9,17],dummi:[2,16],dump:[0,4,11,14],dumpvers:[0,11],duquennoi:2,duquennoy1991:2,dure:[0,11],dust:[0,11],dwarf:[0,11],dynam:[0,11],e2_hurley_2002:0,e2_izzard:0,e2_mint:0,e2_prescript:[0,11],each:[0,2,4,5,7,11,15],eagb:[0,11],eagb_wind_beasor_etal_2020:0,eagb_wind_bs:0,eagb_wind_goldman_etal_2017:0,eagbwind:[0,11],eagbwindfac:[0,11],earli:[0,11],early_asymptotic_giant_branch:0,easi:[4,14],easier:[4,15],ecc2:2,ecc3:2,ecc:[2,5,14,15],eccentr:[0,2,11,12,14,15,16,21],eccentric_rlof_model:[0,11],eccentricity_quadrupl:[0,11],eccentricity_tripl:[0,11],echo:[0,11],eddington:[0,11],edg:[0,5,11,15],edit:12,edu:[0,11],effect:[0,2,7,11,12],effective_metal:[0,11],effici:[0,11],egg:[9,17],eggleton:[0,11,21],either:[0,4,5,7,9,11,15,17,18],eject:[0,11],elabor:12,eld:[0,11],eldridg:[0,11],electon:[0,11],electron:[0,11],element:[0,1,4,7,11,13,16],els:12,email:4,emp:[0,11],emp_feh_maximum:[0,11],emp_logg_maximum:[0,11],emp_minimum_ag:[0,11],empti:[4,6,14],enabl:[0,11],encod:4,encount:7,end:[0,2,4,7,11],end_index:2,end_timestamp:15,energi:[0,11],enhanc:[0,11],enlarg:[0,11],enough:2,ensembl:[0,4,5,7,11,13,15],ensemble_def:[0,11],ensemble_dictionari:5,ensemble_dt:[0,11],ensemble_factor_in_probability_weighted_mass:7,ensemble_filter_:[0,11],ensemble_filters_off:[0,11],ensemble_json:4,ensemble_legacy_ensembl:[0,11],ensemble_list:5,ensemble_logdt:[0,11],ensemble_logtim:[0,11],ensemble_macro:[0,11],ensemble_output_:7,ensemble_startlogtim:[0,11],ensure_ascii:4,enter:[0,9,11,17],enthalpi:[0,11],entir:[12,14],entri:[4,5],env:[9,11,16,17],envelop:[0,11],equal:[4,15],equat:[0,11],equation_of_state_algorithm:[0,11],equation_of_state_paczynski:0,equatori:[0,11],equival:7,errno:[9,17],error:[0,4,7,9,11,15,17],errors_exceed:15,errors_found:15,esa:2,escap:[0,11],escape_fract:[0,11],escape_veloc:[0,11],eta:[0,11],etal:[0,11],etc:[0,4,5,8,9,11,14,15,16,17,18],euler:[0,11],evalu:[2,5,15,21],evan:[0,11],evapor:[0,11],evaporate_escaped_orbiting_object:[0,11],even:13,event:[0,11],everi:[0,9,11,17],everyth:[5,7,14,15],everytim:[9,17],evid:[0,11],evolut:[0,1,5,7,11,14,15,16],evolution_split:[0,11],evolution_splitting_maxdepth:[0,11],evolution_splitting_sn_eccentricity_threshold:[0,11],evolution_splitting_sn_n:[0,11],evolution_typ:[7,15],evolutionari:[0,11,14],evolv:[0,3,5,7,11,12],evolve_popul:15,evolve_singl:[5,12,14],exact:[1,4,7],exactli:[0,11],exampl:[1,2,4,5,14,18],example_above_m:12,example_compact_object:15,example_dco:15,example_df:14,example_head:4,example_log:18,example_log_co:[1,12],example_logging_string_co:12,example_logging_string_post_m:12,example_massloss:[12,14],example_output:14,example_parse_output:4,example_pop:[14,15],example_pop_set:15,example_python_population_result:15,example_sn:12,exce:[0,7,11],except:[4,5,6,7,11,15,16],execut:[0,5,7,9,11,15,17],exist:[0,5,6,11,15],exist_ok:[4,15],exit:[0,4,11],exp:[5,15],expand:[15,18],expect:[9,11,17],experiment:[0,4,11],explain:[3,4],explicitli:[0,1,11],explod:[0,11],explos:[0,11],expoenti:[0,11],expon:[0,11],export_all_info:[5,15],express:[0,11],extend:[9,17],extens:11,extern:[0,11],extra:[0,3,5,7,9,11,15,18],extra_text:6,extract:[4,15],extract_ensemble_json_from_str:4,extrapol:[2,7],fabian:[0,11],fabian_imf_log:[0,11],fabian_imf_log_tim:[0,11],fabian_imf_log_timestep:[0,11],factor:[0,2,4,7,11],fade:[0,11],fail:[0,4,7,9,11,17],fail_sil:4,failed_count:15,failed_prob:15,failed_system:7,failed_system_log:7,failed_systems_error_cod:15,failed_systems_threshold:7,failsaf:14,failur:[0,11],fallback:12,fallback_mass:12,fals:[0,4,5,7,11,13,15,16],fancy_parsing_funct:18,far:[0,11],farmer:[0,11],fase:15,fast:[0,11],faster:15,favorit:14,featur:[3,9,15],feed:7,ferguson:[0,11],fetch:14,few:[0,11],field:[0,11],fig:[0,2,11],figur:[7,16],file:[0,1,4,5,6,7,8,9,11,14,15,16,17,18],file_log:[0,11],filehandl:6,filenam:[0,1,4,5,7,11,14,15,18],filenotfounderror:[9,17],filepath:1,fill:14,fill_data:2,filter:[0,4,11,13],filter_arg_dict:4,filter_valu:[4,13],fin:[0,11],find:[4,5,7,9,15,17],finish:[4,15,16],first:[0,2,4,5,9,11,14,15,17,21],first_giant_branch:0,fishlock:[0,11],fit:[0,2,4,5,11,14,21],fix:[0,2,4,5,11,14,15,16],flag:[0,1,4,7,11],flash:[0,11],flat:[2,7],flatsect:[2,15],flaw:5,float_overflow_check:[0,11],flto:[9,17],fold:2,follow:[0,2,4,7,9,11,12,16,17],forc:[0,9,11,17],force_circularization_on_rlof:[0,11],force_corotation_of_primary_and_orbit:[0,11],form:[0,4,5,6,11,15],formal:[0,11],format:[0,2,4,5,11,12,14,15],format_ensemble_result:5,formula:[0,11],forward:[0,11],found:[2,9,15,17],four:[0,11],fpic:1,fraction:[0,2,7,11,15],framework:11,free_persistent_data_memaddr_and_return_json_output:11,free_store_memaddr:11,frequenc:[0,11],friction:[0,11],fring:[0,11],from:[0,2,4,5,7,13,14,15,16,21],from_binary_c_config:1,ftz:[9,17],full:[3,4,7,12],full_path:4,further:[2,15],fuv:[0,11],gaia:[0,2,11],gaia_colour_transform_method:[0,11],gaia_conversion_ubvri_bivariate_jordi2010:[0,11],gaia_conversion_ubvri_riello2020:[0,11],gaia_conversion_ubvri_univariate_evans2018:[0,11],gaia_conversion_ubvri_univariate_jordi2010:[0,11],gaia_conversion_ugriz_bivariate_jordi2010:[0,11],gaia_conversion_ugriz_riello2020:[0,11],gaia_conversion_ugriz_univariate_evans2018:[0,11],gaia_conversion_ugriz_univariate_jordi2010:[0,11],gaia_l_binwidth:[0,11],gaia_teff_binwidth:[0,11],gain:7,galact:[0,11],gallino:[0,11],gamma:[0,11],gap:[0,11],garcia:[0,11],gauss:[0,11],gaussian:2,gaussian_func:2,gaussian_normalizing_const:2,gb_reimers_eta:[0,11],gb_wind_beasor_etal_2020:0,gb_wind_goldman_etal_2017:0,gb_wind_reim:0,gb_wind_schroeder_cuntz_2005:0,gbwind:[0,11],gbwindfac:[0,11],gcc:[1,9,17],gce:[0,11],gener:[0,1,2,4,5,6,7,11,12,14,15,16],general_info:4,generalis:2,geometr:[0,11],gerosa:[0,11],get:[0,2,3,4,5,6,9,12,14,15,17,18,21],get_arg_kei:4,get_default:[4,13],get_help:[4,13],get_help_al:[4,5,13],get_help_sup:[4,13],get_integration_constant_q:2,get_max_multipl:2,get_moe_di_stefano_dataset:4,get_siz:4,giant:[0,11],giant_branch:0,git:[0,4,15],git_branch:4,git_build:4,github:4,gitlab:9,give:[0,2,4,11,21],given:[0,1,2,4,5,7,11,18,21],global:[0,2,11],global_dict:2,gmax:2,gmin:2,gnu:11,goe:[0,4,5,11,12,14,16],gogo:[0,11],going:[9,17],goldman:[0,11],gonna:2,good:[0,7,11,14,15,21],gov:[0,11],gravit:[0,11,15],gravitational_radiation_bs:0,gravitational_radiation_bse_when_no_rlof:0,gravitational_radiation_landau_lifshitz:0,gravitational_radiation_landau_lifshitz_when_no_rlof:0,gravitational_radiation_model:[0,11],gravitational_radiation_modulator_:[0,11],gravitational_radiation_modulator_j:[0,11],gravitational_radiation_non:0,grb:[0,11],great:[0,11],greater:[0,11],grevess:[0,11],grid:[0,3,4,5,9,10,11,12,14],grid_class:[9,10],grid_cod:5,grid_opt:[5,7,14,15],grid_options_default:6,grid_options_defaults_dict:6,grid_options_descript:[6,15],grid_options_description_check:6,grid_options_help:6,grid_vari:[7,15],grid_variable_numb:15,gridcode_filenam:7,gridtyp:[5,15],group:4,gsl:[9,17],gsl_dir:[9,17],guess:[0,2,11],h5py:[9,17],hachisu:[0,11],hachisu_disk_wind:[0,11],hachisu_ignore_qcrit:0,hachisu_qcrit:[0,11],hack:6,had:5,half:[0,11],hall:[0,11],handi:[0,11],handl:[0,3,4,5,7,11,14,18,21],handle_ensemble_string_to_json:4,happen:[0,11],hardcod:[12,15],has:[0,1,4,5,7,11,12,13,15],have:[0,2,3,4,5,6,7,9,11,12,14,15,16,17],hbb:[0,11],hbbtfac:[0,11],hdf5:4,hdf5file:4,header:[1,4,12,14,15],headerlin:15,headlin:7,hegb:0,hehg:0,height:[2,15],helium:[0,11],helium_flash_mass_loss:[0,11],helium_white_dwarf:0,help:[0,3,4,6,11,14,15],help_al:[0,11],hem:0,henc:[0,11],hendrik:[9,17],here:[1,4,5,7,11,12,14,16],hertzsprung:[0,11],hertzsprung_gap:0,hertzstrpung:[0,11],heuvel:[0,11],hewd:[0,11],hewd_hewd_ignition_mass:[0,11],hex:7,high:[0,2,11],higher:[0,2,4,7,9,11,15,17],his:2,histori:2,hold:7,hole:[0,11],home:11,homogen:[0,11],hood:14,hopefulli:[0,11],hot:[0,11],how:[0,4,5,7,11,12,14,15],howev:[0,11,12,15],hoyl:[0,11],hpc:[5,8],hpc_function:[9,10],hr_diagram:16,hrd:[0,11],hrdiag:[0,11],hrdiag_output:[0,11],html:[9,15,17],http:[0,1,2,4,11,15],hurlei:[0,11],hut:[0,11],hybrid:[0,11],hydro:[0,11],hydrogen:[0,11],ibc:[0,11],id_cor:12,idea:[15,16],idum:[0,11],ignit:[0,11],ignor:[0,5,7,9,11,12,14,15,17],iia:[0,11],iloc:14,imf:[0,2,11],imf_chabrier2003:2,imf_scalo1986:2,imf_scalo1998:2,imf_tinsley1980:2,immedi:[0,11],implement:[0,5,7,11],impli:[0,11],impos:15,improv:2,inclin:[0,11],inclination1:[0,11],inclination2:[0,11],inclination3:[0,11],inclination4:[0,11],inclini:[0,11],incliniation_quadrupl:[0,11],incliniation_tripl:[0,11],includ:[0,1,2,4,5,9,11,12,14,15,16,17],include_binary_c_default:[5,15],include_binary_c_help_al:[5,15],include_binary_c_version_info:[5,15],include_default:[5,15],include_popul:15,include_population_set:5,incom:[0,11],increas:[0,11],inde:[0,11],indent:[4,14],index:[0,2,9,11,13,14],indic:[0,2,11],individu:[3,9],individual_nova:[0,11],induc:[0,11],inertia:[0,11],info:[4,5,9,11,13,15,16,17],inform:[0,1,3,4,5,6,12,14,15,16],init:5,init_abund:[0,11],init_abund_dex:[0,11],init_abund_mult:[0,11],init_abunds_onli:[0,11],initi:[0,2,5,11,13,14],initial_abundance_hash:5,initial_abundance_mix:[0,11],initial_abunds_onli:[0,11],initial_mass:14,inner:[0,11],input:[1,2,4,5,7,9,11,13,14,16,21],input_dict:4,insert:[5,15],insid:[0,11],inspect:[4,14,16],inspect_dict:4,inspir:[1,16,21],instabl:[0,11],instanc:[4,14,15],instant:[0,11],instantli:[0,11],instead:[0,4,7,11],integ:[0,5,7,11,21],integr:2,integrals_str:2,interact:[0,6,11],interfac:[4,9,11,17],interfer:[9,17],intern:[0,7,11,13],internal_buff:[0,11],internal_buffering_off:0,internal_buffering_print:0,internal_buffering_stor:0,interpol:[2,5],interpolate_in_mass_izzard2012:2,interpolator_nam:2,intershel:[0,11],interstellar:[0,11],intger:[0,11],intro:[0,11],invers:21,involv:[0,11],inward:[0,11],ipynb:15,is_capsul:4,isfil:15,isn:[4,5],isnt:15,isotop:[0,4,11,13],isotope_hash:5,isotope_list:5,item:1,iter:4,its:[0,4,5,6,9,11,15,16,17,18],itself:[4,7,9,12,14,17],iwamoto:[0,11],izzard2012_period_distribut:2,izzard:[0,9,11,17],jager:[0,11],jaschek:2,jeff:[9,17],jia:[0,11],john:[0,11],join:[11,12,14,15],jordi:[0,11],json:[4,5,7,11,14,15],jsondecod:4,jsonencod:4,jupyt:[9,17],just:[0,2,4,5,7,11,15,21],kap:[0,11],kappa:[0,11],kaps_rentrop:[0,11],karaka:[0,11],keep:[5,15],kei:[1,2,4,5,6,7,13,14,15,16],kelvin:[0,11],keplerian:[0,11],keyword:[16,18],kick:[0,7,11],kick_backward:0,kick_forward:0,kick_inward:0,kick_outward:0,kick_random:0,kick_straight_up:0,kick_velocity_custom:0,kick_velocity_fix:0,kick_velocity_maxwellian:0,kill:[1,12,15],kim:[0,11],kind:[0,11],kippenhahn:[0,11],know:[0,1,5,6,11,13,14],known:[0,2,5,11,14,15,18],kroupa2001:[2,5,15],kroupa:2,ktg93:2,kwarg:[5,16,18],lambda:[0,11],lambda_c:[0,11],lambda_ce_dewi_tauri:0,lambda_ce_klencki_2020:0,lambda_ce_polytrop:0,lambda_ce_wang_2016:0,lambda_enthalpi:[0,11],lambda_ionis:[0,11],lambda_min:[0,11],lambda_mult:[0,11],lambda_multipli:[0,11],lambda_v:2,lamer:[0,11],landau:[0,11],langer:[0,11],larger:[0,11],last:2,lastli:[11,14],latter:[0,11],law:2,law_const:2,lbv:[0,11],ld_library_path:[9,17],lead:[0,11,15,21],learn:12,least:[9,17],leav:[0,11],left:[0,11],legaci:[0,11],legacy_yield:[0,11],len:[14,15],lengthen:[0,11],less:[0,1,2,3,11,14],let:[5,14,15],level:[1,4],li7:[0,11],lib:[9,11,14,17],libbinary_c:7,libcustom_logging_e9c2bec7f15541eb847fc6013e48e7:14,libcustom_logging_eac2dfc438a14e5a9f5be98b1b6b4294:14,libgsl:[9,17],libmemo:[9,17],librari:[0,1,5,7,11,12,18],library_path:[9,17],librinterpol:[9,17],lies:[0,11],lifetim:[0,11,15],lifshitz:[0,11],like:[0,1,4,5,7,9,11,15,16,17,19],limit:[0,11,15,16],line:[1,4,5,7,9,12,14,15,16,17],linear2:7,linear:[0,2,7,11],linear_extrapolation_q:2,linearli:19,linker:1,linspac:19,linux:11,list:[0,1,2,4,7,11,14,15,18,19],list_arg:[0,11],list_of_sub_kei:2,lit:[0,11],lithium:[0,11],lithium_gb_post_1dup:[0,11],lithium_gb_post_heflash:[0,11],lithium_hbb_multipli:[0,11],lithium_t:[0,11],littleton:[0,11],liu:[0,11],llnl:[0,11],lnm1:[5,15],load:[0,1,4,5,7,11,12,14,15,16],load_logfil:4,lobe:[0,11,21],local:2,locat:[0,2,7,9,11,17],lodder:[0,11],log10:[0,2,11,15],log10m1:7,log10p:2,log10per:15,log10pmin:2,log:[0,1,2,3,4,5,7,9,11,14,16,17,18,21],log_arg:7,log_args_dir:7,log_every_timestep:[12,14],log_fil:7,log_filenam:[0,11,14,18],log_runtime_system:7,logarithm:2,logensembletim:[0,11],logfil:[4,9,14,17],logg:[0,11],logger:15,logging_dict:1,logging_lin:12,logic:[1,5,7,12],logmass:2,logp:2,logper:2,logperiod:2,long_spectral_typ:2,longer:[0,11],longnam:[5,15],look:[1,4,9,15,17],lookback:[0,11],loon:[0,11],loop:[5,14,15],loos:16,lose:[0,11],loss:[0,11,14],lost:[0,11],lot:[4,7,15,18],low:[0,2,11],low_mass_m:0,low_mass_main_sequ:0,lower:[0,2,5,11,15,19],lsoda:[0,11],lsun:[0,11,16],lugaro:[0,11],luminos:[0,11,16],luminosity_1:16,luminosity_2:16,lynnett:[0,11],m_1:[0,5,11,12,13,14,15,18],m_2:[0,11,12,14,15],m_3:[0,11],m_4:[0,11],m_max:[2,5,15],m_min:[5,15],maccretor:[0,11],machin:[7,9,17],macro:[0,4,11,13],madau:2,maeder:[0,11],magellan:[0,11],magnet:[0,11],magnetic_braking_algorithm:[0,11],magnetic_braking_algorithm_andronov_2003:0,magnetic_braking_algorithm_barnes_2010:0,magnetic_braking_algorithm_hurley_2002:0,magnetic_braking_algorithm_rappaport_1983:0,magnetic_braking_factor:[0,11],magnetic_braking_gamma:[0,11],magnitud:4,mai:[0,11],main:[0,1,7,9,11,12,15,17],main_sequ:[0,11],mainli:8,major:[0,11],make:[0,1,2,4,5,7,9,11,14,15,16,17,18],make_build_text:4,makedir:[4,15],manag:[4,9,17],mani:[0,5,7,11,13,15],manual:12,manufactur:[0,11],map:7,maria:[0,11],mass:[0,1,2,4,5,7,11,13,14,15,16,18,21],mass_1:[15,16],mass_2:[15,16],mass_accretion_for_eld:[0,11],mass_accretor:21,mass_donor:21,mass_evolut:16,mass_for_hestar_ia_low:[0,11],mass_for_hestar_ia_upp:[0,11],mass_of_pmz:[0,11],mass_str:2,massiv:[0,2,11],massless:[0,11],massless_remn:0,master:[7,16],match:[0,4,11,14,15,16],materi:[0,11],math:[5,15],matplotlib:[9,16,17],matter:[0,11],mattsson:[0,11],mattsson_mass_loss:[0,11],mattsson_orich_tpagbwind:[0,11],max:[0,2,11,12,15],max_bound:[2,19],max_evolution_tim:[0,1,11,12,14,15],max_hewd_mass:[0,11],max_model_numb:[0,11],max_multipl:2,max_neutron_star_mass:[0,11],max_queue_s:7,max_stellar_angmom_chang:[0,11],max_stellar_type_1:[0,11],max_stellar_type_2:[0,11],max_stellar_type_3:[0,11],max_stellar_type_4:[0,11],max_tim:14,max_val:2,maximum:[0,2,7,11,12,21],maximum_mass_ratio_for_instant_rlof:[0,11],maximum_mass_ratio_for_rlof:21,maximum_mcbagb_for_degenerate_carbon_ignit:[0,11],maximum_nuclear_burning_timestep:[0,11],maximum_timestep:[0,11],maximum_timestep_factor:[0,11],maxmimum:[0,11],maxwellian:[0,11],mayb:16,mayor:2,mc13_pocket_multipli:[0,11],mch:[0,11],mcmin:[0,11],mdonor:[0,11],mean:[0,2,4,5,7,9,11,17],meant:7,measur:4,medium:[0,11],mega:2,memaddr:[11,12],memori:[1,5,7,11,12,21],menv:[0,11],merg:[0,2,4,7,11],merge_dict:[4,13],merge_multipl:2,merger:[0,11],merger_angular_momentum_factor:[0,11],merger_mass_loss_fract:[0,11],mesa:[9,17],mesasdk_init:[9,17],mesasdk_root:[9,17],messag:4,mestel:[0,11],met:[5,15],metal:[0,2,11,12,14,15,21],method:[0,5,7,11,12,14,15],meynet:[0,11],might:[4,5,9,15,17],milki:[0,11],miller:[0,11],min:[2,12,15],min_bound:[2,19],min_p:2,min_per:2,min_val:2,minimal_verbos:4,minimum:[0,2,4,7,11,21],minimum_co_core_mass_for_carbon_ignit:[0,11],minimum_co_core_mass_for_neon_ignit:[0,11],minimum_donor_menv_for_comenv:[0,11],minimum_envelope_mass_for_third_dredgeup:[0,11],minimum_helium_ignition_core_mass:[0,11],minimum_mcbagb_for_nondegenerate_carbon_ignit:[0,11],minimum_orbital_period_for_instant_rlof:[0,11],minimum_period_for_rlof:21,minimum_separation_for_instant_rlof:[0,11],minimum_separation_for_rlof:21,minimum_time_between_pn:[0,11],minimum_timestep:[0,11],mint:[0,11],mint_data_cleanup:[0,11],mint_dir:[0,11],mint_disable_grid_load_warn:[0,11],mint_kippenhahn:[0,11],mint_kippenhahn_companion_stellar_typ:[0,11],mint_kippenhahn_stellar_typ:[0,11],mint_maximum_shell_mass:[0,11],mint_metal:[0,11],mint_minimum_shell_mass:[0,11],mint_ms_rejuven:[0,11],mint_nuclear_burn:[0,11],mint_remesh:[0,11],mint_use_zams_profil:[0,11],mira:[0,11],misc:[9,11],miscellan:[4,13],miss:[0,4,6,11],mix:[0,4,7,11],mixtur:[0,11],mmax:2,mmin:[2,7],mnra:21,model:[0,1,7,11,12,14,15],modif:3,modifi:[0,11,12],modul:[0,6,7,10,11,13,15],modulo:7,moe:[2,4,5,9,15],moe_di_stefano_2017:5,moe_di_stefano_2017_multiplicity_fract:2,moe_di_stefano_2017_pdf:2,moment:[0,11,12,15,19],momenta:[0,11,16],momentum:[0,11],mont:[0,7,11],monte_carlo_kick:[0,11],more:[0,1,3,4,5,7,9,11,12,13,14,15,16,17,19],most:[4,11],mostli:[4,6,7,15,16,18],move:[0,11],msun:[0,2,11,12,14],much:[0,4,11,15],multi:7,multipl:[0,2,4,7,11,15],multiplc:[0,11],multipli:[0,4,7,11],multiplicity_arrai:2,multiplicity_fraction_funct:7,multiplicity_model:7,multiplicity_modul:7,multiply_values_dict:[4,13],multiprocess:7,must:[0,2,11,14,15],my_stellar_data:[1,12,15],myr:[0,11,14],n100:[0,11],n100_z0:[0,11],n100h:[0,11],n100l:[0,11],n10:[0,11],n150:[0,11],n1600:[0,11],n1600c:[0,11],n200:[0,11],n20:[0,11],n300c:[0,11],n40:[0,11],naked_helium_star_giant_branch:0,naked_helium_star_hertzsprung_gap:0,naked_main_sequence_helium_star:0,name:[1,4,5,6,11,13,15,18,20],natur:[0,11],nauenberg:[0,11],nearer:[0,11],nebula:[0,11],necessari:[4,5,15],need:[0,2,5,9,11,12,14,15,17],neg:[0,4,11],neither:[0,5,11],neleman:[0,11],nelemans_gamma:[0,11],nelemans_max_frac_j_chang:[0,11],nelemans_minq:[0,11],nelemans_n_comenv:[0,11],nelemans_recalc_eccentr:[0,11],nemp:[0,11],nemp_cfe_minimum:[0,11],nemp_nfe_minimum:[0,11],nenamg:[0,11],neon:[0,11],nest:[4,5,15],network:[0,11,13],neutrn:[0,11],neutron:[0,11,15],neutron_star:0,never:[0,11],newer:[0,2,11],newli:[0,11],newopt:2,newton:[0,11],next:[4,15],nice:[1,5,16],nieuwenhuijzen:[0,11],nieuwenhuijzen_windfac:[0,11],nmax:2,no_thermohaline_mix:[0,11],noecho:[0,11],noechonow:[0,11],noel:[0,11],nolowq:7,nomin:[0,11],non:[0,7,11],nonconservative_angmom_gamma:[0,11],none:[0,1,2,4,5,6,7,11,15,21],nonetyp:15,nonzero:7,nor:[0,11],norm:7,normal:[0,4,11],normalis:[2,7],normalize_dict:2,normalize_multipl:7,notabl:15,note:[0,7,11],notebook:[9,11,12,13,14,15,17],notebook_api_funct:14,notebook_custom_log:[14,15],notebook_individual_system:[12,15],notebook_popul:14,noteworthi:3,noth:[5,7],notifi:18,nova:[0,11],nova_faml_multipli:[0,11],nova_irradiation_multipli:[0,11],nova_retention_algorithm_claeys2014:0,nova_retention_algorithm_const:0,nova_retention_algorithm_hillman2015:0,nova_retention_fract:[0,11],nova_retention_method:[0,11],nova_timestep_accelerator_index:[0,11],nova_timestep_accelerator_max:[0,11],nova_timestep_accelerator_num:[0,11],now:[0,2,4,11,12,14,15],nuclear:[0,11],nuclear_mass_hash:5,nuclear_mass_list:5,nucleosynthesi:[0,4,11],nucleosynthesis_sourc:[4,13],nucreacmult:[0,11],nucsyn:[9,11],nucsyn_angelou_lithium:[0,11],nucsyn_gce_outflow_check:[0,11],nucsyn_hbb:[0,11],nucsyn_metal:[0,11],nucsyn_network:[0,11],nucsyn_network_error:[0,11],nucsyn_s_process:[0,11],nucsyn_solv:[0,11],nucsyn_third_dredge_up:[0,11],nugi:[0,11],number:[0,2,4,5,7,9,11,15,17],numer:4,numpi:[4,9,14,17,19],obj:4,object:[0,3,4,5,7,8,11,16],object_hook:4,object_pairs_hook:4,object_parse_funct:14,obtain:0,obvious:12,occur:[0,11,21],off:[0,11,15],off_m:14,offset:[0,11],ohio:[0,11],old:7,old_solut:[9,17],omega:[0,11],onc:[0,11],one:[0,4,5,7,11,13,15,16],onewd:0,onli:[0,4,5,7,11,12,15,21],onset:[0,11],onto:[0,2,11],opac:[0,11],opacity_algorithm:[0,11],opacity_algorithm_ferguson_op:0,opacity_algorithm_paczynski:0,opacity_algorithm_star:0,opal:[0,11],open:[14,15],opm:2,opt:[2,4,11],option:[0,1,2,4,5,9,10,11,15,17,21],orb:[5,15],orbit:[0,2,11,16,21],orbit_evolut:16,orbital_inclin:[0,11],orbital_inclinationi:[0,11],orbital_period:[0,11,12,14,15,21],orbital_period_quadrupl:[0,11],orbital_period_tripl:[0,11],orbital_phas:[0,11],orbital_phase_quadrupl:[0,11],orbital_phase_tripl:[0,11],orbiting_object:[0,11],orbiting_objects_close_pc_threshold:[0,11],orbiting_objects_log:[0,11],orbiting_objects_tides_multipli:[0,11],orbiting_objects_wind_accretion_multipli:[0,11],order:[3,4,5,15],ordereddict:4,org:[0,2,11],origin:[9,17],other:[0,1,2,4,6,7,9,11,13,14,15,16,17],otherwis:[0,5,6,7,11],out:[4,6,7,12,13],outcom:[0,11],outer:[0,11],outfil:[5,15],outfile_nam:1,outfilenam:15,output:[1,3,4,5,7,9,11,12,13,14,16,17,18,21],output_dict:14,output_dir:[5,14,15],output_fil:[4,6,14],output_filenam:[5,15],output_lin:4,outsid:[0,2,11],outward:[0,11],over:[4,5,13,14,15],overflow:[0,11],overlap:4,overrid:2,overriden:15,overshoot:[0,11],overspin_algorithm:[0,11],overspin_bs:[0,11],overspin_massloss:[0,11],overview:11,own:[5,7,9,12,14,15,17],oxygen:[0,11],oxygen_neon_white_dwarf:0,packag:[4,9,11,15,17,19],paczynski:[0,11],page:[0,9,11,15,17],pair:[0,4,11],panda:[4,9,14,16,17],pane:16,panel:[0,11],paper:[0,11],param_nam:4,paramet:[1,2,3,4,5,6,7,9,11,12,14,15,16,18,19,21],parameter_nam:[4,5,11,13,15],parameter_value_input_typ:[4,13],pars:[3,4,5,14,15,16,18],parse_binary_c_version_info:4,parse_cmdlin:5,parse_const:4,parse_float:4,parse_funct:[5,7,14,15,18],parse_function_hr_diagram:16,parse_function_mass:16,parse_function_orbit:16,parse_int:4,parsec:2,part:[2,5,11,14,15,21],partial:[0,11],particularli:[0,11],pasp:2,pass:[5,7,9,11,12,14,15,16,17,18],path:[4,7,9,14,15,17],patho:[9,17],pdf:[0,2,9,11,17],pend:[0,11],per:[0,4,5,7,11,15,21],percentag:[0,11],peret:[0,11],perform:[0,11],perhap:[0,11],periastron:[0,11],pericent:21,period:[0,2,11,12,14,15,16,21],period_str:2,perl:[1,15],persist:11,persistent_data:11,pgo:[0,11],phase:[0,11],phasevol:[0,11,15],phdi:[0,11],photoevapor:[0,11],php:2,physic:15,pick:16,piec:[5,15],pinnsonneault:[0,11],pisn:[0,11],pkg:[9,17],place:[0,11],placehold:16,plai:[0,11],plan:7,planetari:[0,11],plaw2:7,pleas:[0,4,11,15],plot:[0,11,14,16],plot_funct:[9,10],plot_hr_diagram:16,plot_hr_diagram_singl:16,plot_mass:16,plot_orbit:16,plot_system:16,plot_typ:16,pls:5,plu:[0,11],pms:16,pms_mass_1:16,pms_mass_2:16,pn_comenv_transition_tim:[0,11],pn_fast_wind:[0,11],pn_fast_wind_dm_agb:[0,11],pn_fast_wind_dm_gb:[0,11],pn_fast_wind_mdot_agb:[0,11],pn_fast_wind_mdot_gb:[0,11],pn_hall_fading_time_algorithm:[0,11],pn_hall_fading_time_algorithm_maximum:[0,11],pn_hall_fading_time_algorithm_minimum:[0,11],pn_resolv:[0,11],pn_resolve_maximum_envelope_mass:[0,11],pn_resolve_minimum_effective_temperatur:[0,11],pn_resolve_minimum_luminos:[0,11],pne:[0,11],pogg:[0,11],point:[0,2,4,5,9,11,17],poisson:[2,7],pol:[0,11],polytrop:[0,11],pop:12,pop_macro:12,popul:[0,2,3,5,6,8,9,11,17,19],population_id:7,population_nam:15,population_set:5,posit:[0,2,11],possibl:[0,1,2,4,6,9,11,14,17],post:[0,11,12],post_ce_adaptive_menv:[0,11],post_ce_envelope_dm_eagb:[0,11],post_ce_envelope_dm_gb:[0,11],post_ce_envelope_dm_tpagb:[0,11],post_ce_objects_have_envelop:[0,11],post_sn_orbit_bs:0,post_sn_orbit_method:[0,11],post_sn_orbit_tt98:0,postagb_legacy_log:[0,11],potenti:[0,11],power:[0,2,11],powerlaw:2,powerlaw_const:2,powerlaw_extrapolation_q:2,ppisn:[0,11],ppisn_farmer19:0,ppisn_non:0,ppisn_prescript:[0,11],ppn_envelope_mass:[0,11],pragma:12,pre:[0,11,16],pre_events_stardata:[0,11,12],pre_main_sequ:[0,11],pre_main_sequence_fit_lob:[0,11],precis:4,precod:[5,15],predefin:[2,15],predict:7,predictor:[0,11],prefer:[0,5,11],prefix:[0,11],prepar:2,prepare_dict:2,prescript:[0,11,15],prescrit:[0,11],present:[2,4,5,15],preserv:[0,11],preset:16,pressur:[0,11],prev_stellar_type_1:15,prev_stellar_type_2:15,prevent:[0,7,11],previou:4,previous:[14,15],previous_stardata:[1,12,14,15],primari:[1,2,5,15,21],print:[4,6,7,11,12,13,14,15],print_help:[4,13],print_info:6,print_option_descript:6,print_structur:4,printf:[1,12,14,15],prior:[0,11],privat:[5,6,9],prob_dict:2,probability_weighted_mass:7,probabl:[0,1,2,5,6,7,11,12,15,16],probdist:[5,15],problem:[0,11],process:[0,4,5,7,11,15],profil:[0,11],progenitor:[0,11,15],program:[9,17],project:[0,11],proper:[6,12],properli:[0,11],properti:[0,4,7,16],prot1:[0,11],prot2:[0,11],prot3:[0,11],prot4:[0,11],provid:[0,2,5,7,11,15,18],pseudorandom:[0,11],publicli:12,puls:[0,11,21],pulsat:[0,11],pump:[0,11],purpos:[7,15,16],push_macro:12,put:[1,4,5,7,15,16],py_rinterpol:[9,17],pyenv:[9,11,17],pysiz:4,pytest:[9,17],python3:[9,11,17],python:[4,11,12,15],q_high_extrapolation_method:7,q_interpol:2,q_low_extrapolation_method:7,qcrit_bh:[0,11],qcrit_bs:0,qcrit_cheb:[0,11],qcrit_chen_han_formula:0,qcrit_chen_han_t:0,qcrit_cowd:[0,11],qcrit_degenerate_bh:[0,11],qcrit_degenerate_cheb:[0,11],qcrit_degenerate_cowd:[0,11],qcrit_degenerate_eagb:[0,11],qcrit_degenerate_gb:[0,11],qcrit_degenerate_hegb:[0,11],qcrit_degenerate_hehg:[0,11],qcrit_degenerate_hem:[0,11],qcrit_degenerate_hewd:[0,11],qcrit_degenerate_hg:[0,11],qcrit_degenerate_lmm:[0,11],qcrit_degenerate_m:[0,11],qcrit_degenerate_n:[0,11],qcrit_degenerate_onewd:[0,11],qcrit_degenerate_tpagb:[0,11],qcrit_eagb:[0,11],qcrit_gb:[0,11],qcrit_gb_bs:0,qcrit_gb_chen_han_formula:0,qcrit_gb_chen_han_t:0,qcrit_gb_ge2015:0,qcrit_gb_hjellming_webbink:0,qcrit_gb_q_no_comenv:0,qcrit_gb_temmink2021:0,qcrit_gb_vos2018:0,qcrit_ge2015:0,qcrit_hegb:[0,11],qcrit_hehg:[0,11],qcrit_hem:[0,11],qcrit_hewd:[0,11],qcrit_hg:[0,11],qcrit_hjellming_webbink:0,qcrit_lmm:[0,11],qcrit_m:[0,11],qcrit_n:[0,11],qcrit_onewd:[0,11],qcrit_q_no_comenv:0,qcrit_temmink2021:0,qcrit_tpagb:[0,11],qcrit_vos2018:0,qcrits_:[0,11],qcrits_degenerate_:[0,11],qdata:2,qlimit:2,quad:7,quadrat:[0,11],quadrulpl:[0,11],quadrupl:[0,2,7,11],quantiti:16,queri:14,queue:7,quickli:14,quit:[0,4,11],r_l:21,radi:[0,11],radiat:[0,11],radii:[0,11,21],radiu:[0,1,11,12,15,16,21],radius_1:16,radius_2:16,ragb:21,raghavan2010_binary_fract:2,raghavan:2,rai:[0,11],railton:[0,11],rais:[0,4,7,11,15],ram:[0,11],ran:7,random:[0,7,11],random_count:14,random_se:[0,11,14],random_skip:[0,11],random_system:[0,11],random_systems_se:[0,11],rang:[0,2,5,7,11,14,15,19],rapidli:[0,11],rappaport:[0,11],rate:[0,2,11],rather:[0,4,5,7,9,11,12,14,15,17],ratio:[0,2,11,15,21],raw:[4,5,7,11,16,18],raw_output:4,reach:[0,11],reaction:[0,11],read:[3,4,14,15],real:[5,15],realli:[0,5,6,7,11,15],reason:[0,11],rebuild:[0,9,11,17],rebuilt:[9,17],recalcul:[0,11],receiv:4,recogn:15,recombin:[0,11],recommend:[1,3,5],recompil:[9,15,17],recurs:[4,5],recursive_change_key_to_float:4,recursive_change_key_to_str:4,red:[0,11],redhat:1,redshift:2,reduc:[0,11],reduct:7,regardless:16,region:[0,11],regist:15,reignit:[0,11],reimer:[0,11],reinstal:[9,17],reject:[0,11],rejects_in_log:[0,11],rejuven:[0,11],rel:[0,11],relat:[0,11],releas:[4,9,17],reliabl:11,remain:[0,11],remesh:[0,11],remnant:[0,11],remov:[0,4,5,11,14,15],remove_fil:4,renormalis:2,rentrop:[0,11],repeat:[0,7,11],repo:[9,17],report:[0,11,15],repositori:3,repres:7,represent:[4,5,15],reproduc:[0,11],requir:[0,2,4,11,14,15,16,18],reset:[0,11],reset_pref:[0,11],reset_star:[0,11],reset_stars_default:[0,11],resolut:[0,5,7,11,15],resolv:[0,11],reson:[0,11],respect:[0,2,11],rest:[2,5,15],restructuredtext:4,result:[0,1,2,4,5,7,9,11,14,15,17],result_arrai:2,result_dict:2,retain:[0,11],rethink:4,return_all_info:5,return_arglin:11,return_binary_c_default:5,return_binary_c_version_info:[4,5,13],return_compilation_dict:1,return_help:11,return_help_al:[4,11],return_maximum_mass_ratio_for_rlof:[11,21],return_minimum_orbit_for_rlof:[11,21],return_persistent_data_memaddr:11,return_population_set:5,return_store_memaddr:11,return_version_info:[4,11],revap_in:[0,11],revap_out:[0,11],revers:[0,11,16],reverse_tim:[0,11],revis:[0,4],rewrit:5,rhagavan:7,ri0005:15,rich:[0,11],riello:[0,11],rin:[0,11],ring:[0,11],risk:[5,15],ritter:[0,11],rk2:[0,11],rk4:[0,11],rlof:[0,11,21],rlof_angular_momentum_transfer_model:[0,11],rlof_angular_momentum_transfer_model_bs:0,rlof_angular_momentum_transfer_model_conserv:0,rlof_eccentric_as_circular:[0,11],rlof_entry_threshold:[0,11],rlof_f:[0,11],rlof_interpolation_binary_c:0,rlof_interpolation_bs:0,rlof_interpolation_method:[0,11],rlof_mdot_factor:[0,11],rlof_mdot_modul:[0,11],rlof_method:[0,11],rlof_method_adapt:0,rlof_method_adaptive2:0,rlof_method_bs:0,rlof_method_claei:0,rlof_method_ritt:0,rlof_nonconservative_gamma_donor:0,rlof_nonconservative_gamma_isotrop:0,rlof_radiation_correct:[0,11],rlof_transition_objects_escap:[0,11],rob:[0,2,11,21],robert:[9,17],roch:[0,11,21],roche_lob:21,rochelob:21,rol1:14,rol2:14,room:[5,15],root:[9,17],rotat:[0,2,11],rotation:[0,11],rotationally_enhanced_expon:[0,11],rotationally_enhanced_mass_loss:[0,11],rotationally_enhanced_massloss:[0,11],rotationally_enhanced_massloss_angmom:0,rotationally_enhanced_massloss_langer_formula:[0,11],rotationally_enhanced_massloss_langer_formula_and_angmom:0,rotationally_enhanced_massloss_non:0,rout:[0,11],routin:[0,3,5,9,11,16],row:[14,16],rring:[0,11],rssd:2,rst:[4,6],rsun:16,rubric:5,run:[0,1,3,4,5,7,9,11,17,18],run_popul:11,run_system:[11,12,13,14,16,18],run_system_wrapp:[9,10,12,14],run_wrapp:3,run_zero_probability_system:7,runtim:[1,7],russel:[0,11],rzam:21,s_option:7,safe:15,sai:[0,11],said:[0,11],same:[0,4,7,9,11,14,17],sampl:[0,2,5,11,15,19],sample_valu:2,sampler:9,sana12:[2,15],sana:2,save:[0,1,2,11,12,15],save_pre_events_stardata:[0,11],scalo:2,scanf:0,scheme:[0,11],schneider:[0,11],schroeder:[0,11],script:[3,9,12,17],sdb:[0,11],sdist:[9,17],sdo:[0,11],search:9,second:[0,2,4,11,16],secondari:[2,21],section:[2,4,8,9,11,15,17],see:[0,5,9,11,12,13,14,15,16,17],seed:[0,11],seem:[9,16,17],seen:4,segment:19,seitenzahl2013_model:[0,11],seitenzahl:[0,11],select:[0,4,11,14],selected_head:4,selector:[0,11],self:[5,7,14,15],semi:[0,11],sent:[0,11],sentenc:1,sep:[2,5,14,15,21],sep_max:15,sep_min:15,separ:[0,2,4,5,6,11,12,14,15,16,21],separation_quadrupl:[0,11],separation_tripl:[0,11],separta:[0,11],seper:15,sequenc:[0,11,12],seri:[0,11],serialis:[4,5],serv:4,server:5,set:[0,1,2,3,4,5,6,7,9,12,13,14,16,17],set_moe_di_stefano_set:5,set_opt:2,setup:[9,15,17,18],sever:[6,7,13,15,16,18],sfh:2,shara:[0,11],share:[1,7,14,18],shared_lib_filenam:12,shell:[0,11],shorten:[0,11],should:[0,1,2,5,6,7,9,11,14,15,16,17,18],shouldn:[0,4,11],show:[0,3,7,11,14,15,16],show_plot:16,show_stellar_typ:16,shown:[0,11,16],shrinkagb:14,side:15,siess:[0,11],sigma:2,silent:4,sill:[0,11],simplest:14,simpli:[0,11],simul:[0,1,11,12,15],simulation_:5,sinc:[4,16],singl:[0,2,3,5,7,11,15,16],single_star_lifetim:[11,12,14],sit:[0,11],site:11,situat:11,size:[4,7],skip:[0,4,7,9,11,17],skipkei:4,slightli:11,slope:2,slow:[0,11],slower:[0,11],slurm:[5,7,8],slurm_grid:5,small:[0,11],small_envelope_method:[0,11],small_envelope_method_bs:0,small_envelope_method_miller_bertolami:0,smaller:[0,11],sn_impulse_liu2015:0,sn_impulse_non:0,sn_impulse_wheeler1975:0,sn_kick_companion_a:[0,11],sn_kick_companion_aic_bh:[0,11],sn_kick_companion_bh_bh:[0,11],sn_kick_companion_bh_n:[0,11],sn_kick_companion_ecap:[0,11],sn_kick_companion_grb_collapsar:[0,11],sn_kick_companion_hestaria:[0,11],sn_kick_companion_ia_chand:[0,11],sn_kick_companion_ia_chand_co:[0,11],sn_kick_companion_ia_eld:[0,11],sn_kick_companion_ia_h:[0,11],sn_kick_companion_ia_he_co:[0,11],sn_kick_companion_ia_hybrid_hecowd:[0,11],sn_kick_companion_ia_hybrid_hecowd_sublumin:[0,11],sn_kick_companion_ibc:[0,11],sn_kick_companion_ii:[0,11],sn_kick_companion_iia:[0,11],sn_kick_companion_ns_n:[0,11],sn_kick_companion_phdi:[0,11],sn_kick_companion_pisn:[0,11],sn_kick_companion_ppisn:[0,11],sn_kick_companion_tz:[0,11],sn_kick_companion_wdkick:[0,11],sn_kick_dispersion_aic_bh:[0,11],sn_kick_dispersion_bh_bh:[0,11],sn_kick_dispersion_bh_n:[0,11],sn_kick_dispersion_ecap:[0,11],sn_kick_dispersion_grb_collapsar:[0,11],sn_kick_dispersion_ia_hybrid_hecowd:[0,11],sn_kick_dispersion_ia_hybrid_hecowd_sublumin:[0,11],sn_kick_dispersion_ibc:[0,11],sn_kick_dispersion_ii:[0,11],sn_kick_dispersion_ns_n:[0,11],sn_kick_dispersion_phdi:[0,11],sn_kick_dispersion_pisn:[0,11],sn_kick_dispersion_ppisn:[0,11],sn_kick_dispersion_tz:[0,11],sn_kick_distribution_aic_bh:[0,11],sn_kick_distribution_bh_bh:[0,11],sn_kick_distribution_bh_n:[0,11],sn_kick_distribution_ecap:[0,11],sn_kick_distribution_grb_collapsar:[0,11],sn_kick_distribution_ia_hybrid_hecowd:[0,11],sn_kick_distribution_ia_hybrid_hecowd_sublumin:[0,11],sn_kick_distribution_ibc:[0,11],sn_kick_distribution_ii:[0,11],sn_kick_distribution_ns_n:[0,11],sn_kick_distribution_phdi:[0,11],sn_kick_distribution_pisn:[0,11],sn_kick_distribution_ppisn:[0,11],sn_kick_distribution_tz:[0,11],sn_none:12,sn_type:12,sneia:[0,11],snia:[0,11],snippet:[11,14],solar:[0,2,11,13,21],solver:[0,11],solver_forward_eul:0,solver_predictor_corrector:0,solver_rk2:0,solver_rk4:0,some:[0,1,2,5,7,9,11,12,13,14,15,16,17],someth:[0,5,11,14],sometim:13,somewhat:15,soon:19,sort:4,sort_kei:4,sourc:[1,2,4,5,6,7,10,16,18,19,21],source_file_filenam:7,source_list:5,sourcecod:[9,11,12,17],sourcefile_nam:1,space:[0,5,11,15,19],spacing_funct:[9,10],spacingfunc:[5,15],spacingfunct:[5,15],special:[0,11,15],specif:[0,4,11,13,14,16],specifi:[0,7,11],spectral:2,speed:[0,7,11],speedtest:[0,11],spent:4,spheric:[0,11],spin:[0,11],spinrat:[0,11],split:[0,7,11,14,15],split_lin:14,splitlin:[11,12,14,15],splitpoint:[0,11],spread:5,sqrt:[0,11],src:[9,11,12,17],stabil:[0,11],stabl:[0,11],stancliff:[0,11],standard:[0,2,11],star:[1,2,7,9,11,12,13,14,15,16,21],star_with_no_mass:0,starcount:15,stardata:[0,1,11,12,14,15],stardata_dump_filenam:[0,11],stardata_load_filenam:[0,11],stardata_t:12,start:[0,1,4,5,6,7,11,14,15],start_tim:[0,11],start_timestamp:15,startswith:14,state:[0,11],statement:[1,12,14,15],statist:[0,11],statu:[0,1,11,15],stderr:[0,11],stdout:4,steadi:[0,11],stefan:16,stefano:[4,5,9,15],stellar:[0,2,7,11,16,20],stellar_structure_algorithm:[0,11],stellar_structure_algorithm_external_funct:0,stellar_structure_algorithm_mint:0,stellar_structure_algorithm_modified_bs:0,stellar_structure_algorithm_non:0,stellar_typ:[1,9,10,12,14,15,16],stellar_type_1:[0,11,15,16],stellar_type_2:[0,11,15,16],stellar_type_3:[0,11],stellar_type_4:[0,11],stellar_type_dict:20,stellar_type_dict_short:20,step:[5,12,14,15,16,19],stepsiz:[5,15],stick:7,stiff:[0,11],still:[1,7,12],stop:[0,4,11],stopfil:[0,11],storag:[0,11],store:[0,2,3,4,5,7,9,14,15,17,21],store_capsul:11,store_memaddr:[11,21],str:[1,4,5,6,15,16],straight:5,straightforward:15,straniero:[0,11],strength:[0,11],strict:4,string:[0,1,3,4,5,6,7,11,13,14,15,16,18],strip:[0,11,14],stronger:[0,11],struct:[0,11,12],structur:[0,4,7,11,16],stuff:[4,7,14,15,16],style:[0,11],sub:[0,4,11],subdict:4,subject:[0,11],sublumin:[0,11],submit:9,subroutin:8,subsequ:[0,11],subtract:4,subtract_dict:4,succe:[0,11],suggest:[0,9,11,17],suit:[9,17],sum:[0,11],sundial:[0,11],supercrit:[0,11],supernova:[0,7,11],superwind:[0,11],superwind_mira_switchon:[0,11],sure:[2,5,7,9,14,15,16,17,18],surfac:[0,11],surrei:15,surviv:[0,11],survivor:[0,11],switcher:[0,11],symmetr:[0,11],synchron:[0,11],synonym:[0,11],synthesi:[7,9,15,17],system:[0,3,4,5,7,9,11,12,15,16,17,18],system_gener:[5,15],tabl:[0,2,11],take:[0,2,4,5,7,11,15,18],taken:[0,4,11,12],tar:[9,17],target:[1,6],task:[0,2,4,5,6,8,11,15,16,18,19,21],tauri:[0,11],tbse:[0,11],technic:[12,15],teff:[0,2,11],teff_1:16,teff_2:16,tell:4,temp_dir:[4,15],temperatur:[0,2,11,16],termin:[1,9,12,15,17],test:[0,4,5,7,9,11,14,15,17,21],test_func:11,test_logfil:14,test_pop:15,text:[4,6],than:[0,2,4,7,9,11,15,17],thats:15,thei:[0,2,4,5,7,11,15,16],thelog:[0,11],them:[2,4,5,11,15],themselv:[2,4],thermal:[0,2,11,21],thermally_pulsing_asymptotic_giant_branch:0,thermohalin:[0,11],thesi:[0,11],thi:[0,1,2,4,5,6,7,9,10,11,12,13,14,15,16,17,18,19,21],thick:[0,11],thick_disc_end_ag:[0,11],thick_disc_logg_max:[0,11],thick_disc_logg_min:[0,11],thick_disc_start_ag:[0,11],thin:[0,11],thing:[0,2,4,5,6,11,15,18],think:[0,4,5,11],third:[0,2,11],third_dup:[0,11],third_dup_multipli:[0,11],thorn:[0,11],those:[4,5,9,15,17],thread:7,thread_id:7,three:[0,2,11,15],three_part_powerlaw:[2,15],threshold:[0,4,7,11],through:[5,11,14,15,16,18],throughout:[5,15],tidal:[0,11],tidal_strength_factor:[0,11],tide:[0,11],tides_convective_damp:[0,11],tides_hurley2002:[0,11],tides_zahn1989:[0,11],time:[0,1,2,4,5,7,9,11,12,14,15,16,17],timescal:[0,11],timestamp:7,timestep:[0,11,12,14],timestep_limit:[0,11],timestep_log:[0,11],timestep_modul:[0,11],timestep_multipli:[0,11],timestep_solver_factor:[0,11],tinslei:2,titl:6,tmp:[0,4,9,11,14,15,17],tmp_dir:[5,7,15],tmp_tabl:2,todo:[0,1,2,4,5,6,7,11,13,15,16,18,19,21],toler:[0,11],too:[0,4,7,9,11,17,18],took:15,top:15,topic:[0,11],torqu:[0,11],total:[0,2,4,5,7,11,15,16],total_count:15,total_mass_run:15,total_prob:15,total_probability_weighted_mass_run:15,tout:[0,11,21],tpagb:[0,11],tpagb_reimers_eta:[0,11],tpagb_wind_beasor_etal_2020:0,tpagb_wind_bloeck:0,tpagb_wind_goldman_etal_2017:0,tpagb_wind_mattsson:0,tpagb_wind_reim:0,tpagb_wind_rob_cwind:0,tpagb_wind_van_loon:0,tpagb_wind_vw93_karaka:0,tpagb_wind_vw93_karakas_carbon_star:0,tpagb_wind_vw93_orig:0,tpagb_wind_vw93_orig_carbon_star:0,tpagbwind:[0,11],tpagbwindfac:[0,11],traceback:4,track:[7,16],trade:[0,11],transfer:[0,11],transform:[0,4,11],transit:[0,11],treat:[0,11],trigger:[0,11],trio:15,tripl:[0,2,7,11],truli:[0,11],tupl:1,turn:[0,4,11,14,15],two:[0,4,11,12,20,21],txt:[5,14,15,18],type:[0,1,2,4,5,6,7,11,14,15,16,19,20,21],type_chng:14,type_ia_mch_supernova_algorithm:[0,11],type_ia_sub_mch_supernova_algorithm:[0,11],typic:[0,11],ubvri:[0,11],ugriv:[0,11],uncom:[5,14,15],undef:12,under:[14,19],undergo:[0,11],understand:5,undescrib:6,uniform:2,union:[2,4,5,15,19,21],uniqu:[4,5,7,15],unit:[0,11,13,21],univari:[0,11],unknown:18,unless:[1,5,7],unload:5,unpars:11,unrecogn:[9,17],unsign:0,unstabl:[0,11],until:[0,2,4,11],unus:[0,7,11],unweight:15,updat:[2,4,5,9,15,17],update_dict:[4,13],upper:[0,2,11,19],usag:[0,3],use:[0,2,4,5,7,8,9,11,12,13,14,15,16,17,18],use_astropy_valu:16,use_datadir:[5,15],use_fixed_timestep_:[0,11],use_periastron_roche_radiu:[0,11],use_tabular_intershell_abundances_karakas_2012:[0,11],used:[0,1,2,4,5,7,11,12,13,14,15,16],useful:[0,4,5,7,9,11,13,14,15,17,18,21],useful_func:[9,10],user:[1,2,4,5,6,7,12,18],uses:[0,7,11,12,15],using:[0,1,5,9,12,13,14,15,17],usual:[0,2,7,11,15],util:[1,2,4,5,6,11,12,13,14,15,16,18,19,21],val:2,valid:[0,2,4,11,12],valu:[0,1,2,4,5,6,7,11,13,14,15,16],value_lin:14,valueerror:15,valuerang:[5,15],values_arrai:14,van:[0,11],vandenheuvel_log:[0,11],vari:[0,11,15],variabl:[0,3,4,5,7,11],variant:[0,11],variou:[0,11],vassiliadi:[0,11],veloc:[0,2,11],verbos:[1,2,4,7,9,14,15,17],verbose_print:4,veri:[0,5,11,12,14,15,19],versa:21,version:[0,4,5,9,11,13,15,17],version_info:4,version_info_dict:13,version_info_str:4,version_onli:[0,11],via:[3,5,7,11,12,15,16],vice:21,vink:[0,11],virtual:[9,17],virtualenviron:[9,17],viscos:[0,11],viscou:[0,11],visibl:12,visit:9,volum:[0,11],vrot1:[0,11],vrot2:[0,11],vrot3:[0,11],vrot4:[0,11],vrot_breakup:0,vrot_bs:0,vrot_non_rot:0,vrot_sync:0,vw93:[0,11],vw93_eagb_wind_spe:[0,11],vw93_mira_shift:[0,11],vw93_multipli:[0,11],vw93_tpagb_wind_spe:[0,11],vwind:[0,11],vwind_beta:[0,11],vwind_multipli:[0,11],wai:[0,4,5,7,11,14,16],wang:[0,11],want:[0,2,4,5,6,7,11,12,13,15,16],warmup_cpu:[0,11],warn:[0,11,14,15],wave:[0,11,15],wd_accretion_rate_new_giant_envelope_lower_limit_helium_donor:[0,11],wd_accretion_rate_new_giant_envelope_lower_limit_hydrogen_donor:[0,11],wd_accretion_rate_new_giant_envelope_lower_limit_other_donor:[0,11],wd_accretion_rate_novae_upper_limit_helium_donor:[0,11],wd_accretion_rate_novae_upper_limit_hydrogen_donor:[0,11],wd_accretion_rate_novae_upper_limit_other_donor:[0,11],wd_kick:[0,11],wd_kick_at_every_puls:0,wd_kick_at_given_puls:0,wd_kick_direct:[0,11],wd_kick_end_agb:0,wd_kick_first_rlof:0,wd_kick_pulse_numb:[0,11],wd_kick_when:[0,11],wd_sigma:[0,11],wdwd_merger_algorithm:[0,11],wdwd_merger_algorithm_bs:0,wdwd_merger_algorithm_chen2016:0,wdwd_merger_algorithm_perets2019:0,weight:[0,7,11],well:[0,4,7,9,11,12,14,17],were:[4,15],what:[0,1,2,4,5,6,7,9,11,12,14,15,17,18],whatev:[5,9,12,17],wheeler:[0,11],when:[0,1,2,4,5,6,7,9,11,13,14,15,17,18],whenev:[9,17],where:[0,1,2,4,5,6,7,9,11,15,17],whether:[0,2,4,5,6,7,11,13,15,16,21],which:[0,1,2,4,5,6,7,9,11,12,13,14,15,17,18,21],whichev:7,white:[0,11],white_dwarf_cooling_carrasco2014:[0,11],white_dwarf_cooling_mestel:[0,11],white_dwarf_cooling_mestel_modifi:[0,11],white_dwarf_cooling_model:[0,11],white_dwarf_radius_carrasco2014:[0,11],white_dwarf_radius_model:[0,11],white_dwarf_radius_mu:[0,11],white_dwarf_radius_nauenberg1972:[0,11],whole:[5,7,12],width:[0,11],wind:[0,11],wind_algorithm_binary_c_2020:0,wind_algorithm_hurley2002:0,wind_algorithm_non:0,wind_algorithm_schneider2018:0,wind_angmom_loss_bs:0,wind_angmom_loss_lw:0,wind_angmom_loss_lw_hybrid:0,wind_angmom_loss_spherically_symmetr:0,wind_angular_momentum_loss:[0,11],wind_disc_angmom_fract:[0,11],wind_disc_mass_fract:[0,11],wind_djorb_fac:[0,11],wind_gas_to_dust_ratio:[0,11],wind_lbv_luminosity_lower_limit:[0,11],wind_mass_loss:[0,11],wind_multiplier_:[0,11],wind_nieuwenhuijzen_luminosity_lower_limit:[0,11],wind_type_multiplier_:[0,11],within:[0,4,5,9,11,12,13,15,17],without:[2,5,7,12,14],won:[0,11,14],wood:[0,11],work:[0,4,9,11,12,14,16,17],would:[0,4,11,15,16],wouldn:[5,15],wr_wind:[0,11],wr_wind_bs:0,wr_wind_eldridg:0,wr_wind_fac:[0,11],wr_wind_maeder_meynet:0,wr_wind_nugis_lam:0,wrap:[1,12],wrapper:[4,11,12,14,21],write:[1,4,5,6,7,11,12,14,15,18],write_binary_c_calls_to_fil:[5,15],write_binary_c_parameter_descriptions_to_rst_fil:4,write_grid_options_to_rst_fil:6,write_logfil:11,written:[5,6,7,11,14,15,18],written_data:14,wrlof_mass_transf:[0,11],wrlof_method:[0,11],wrlof_non:0,wrlof_q_depend:0,wrlof_quadrat:0,wrong:[9,17],wrwindfac:[0,11],wtts2:[0,11],wtts_log:[0,11],www:[0,2,11],x86_64:11,year:[0,2,11],yet:[0,4,7,11,16],yield:[0,11],you:[0,1,4,5,6,7,9,11,12,14,15,16,17,21],young:[0,11],your:[7,9,12,14,17],yourself:[15,16],zahn:[0,11],zam:[0,2,11,18,21],zams_collis:21,zams_mass:15,zams_mass_1:15,zams_mass_2:15,zero:[0,1,7,11],zero_ag:[12,14,15],zero_prob_stars_skip:15,zone:[0,11],zoom:[0,11],zoomfac_multiplier_decreas:[0,11],zoomfac_multiplier_increas:[0,11],zsolar:2,zytkow:[0,11]},titles:["Binary_c parameters","custom_logging_functions module","distribution_functions module","Example notebooks","functions module","grid_class module","Grid options and descriptions","Population grid code options","hpc_functions module","Welcome to binary_c-python\u2019s documentation!","Binarycpython code","Using the API functionality of binarycpython","Using custom logging routines with binarycpython","Extra features and functionality of binarycpython","Running individual systems with binarycpython","Running populations with binarycpython","plot_functions module","Python module for binary_c","run_system_wrapper module","spacing_functions module","stellar_types module","useful_funcs module"],titleterms:{"function":[4,11,13,14,15],"public":7,Adding:15,Using:[11,12],about:13,after:[9,17],algorithm:0,api:[11,12,14],binari:0,binary_c:[0,9,11,13,17],binarycpython:[10,11,12,13,14,15],build:[9,13,17],code:[7,10],compact:12,custom:12,custom_logging_funct:1,descript:6,dictionari:13,directli:12,distribution_funct:2,document:[9,17],environ:[9,17],evolut:12,evolv:15,exampl:[3,9,11,12,13,15,17],extra:13,faq:[9,17],featur:13,free:11,from:[9,11,12,17],full:15,get:[11,13],grid:[6,7,15],grid_class:5,handl:15,help:13,hpc_function:8,indic:9,individu:14,inform:[11,13],input:0,instal:[9,17],instruct:[9,17],issu:[9,17],log:[12,15],mass:12,misc:0,modif:13,modul:[1,2,4,5,8,9,16,17,18,19,20,21],moe:7,note:[9,17],notebook:3,noteworthi:15,nucsyn:0,object:[12,14,15],option:[6,7],output:[0,15],paramet:[0,13],pars:13,pip:[9,17],plot_funct:16,popul:[7,12,14,15],privat:7,python:[9,17],requir:[9,17],routin:12,run:[12,14,15],run_system_wrapp:18,run_wrapp:14,sampler:7,script:15,section:0,set:[11,15],singl:14,sourc:[9,17],spacing_funct:19,star:0,stefano:7,stellar_typ:20,store:11,string:12,supernova:12,system:14,tabl:9,usag:[9,11,12,17],useful_func:21,using:11,variabl:[9,15,17],via:[9,14,17],welcom:9,when:12}})
\ No newline at end of file
+Search.setIndex({docnames:["binary_c_parameters","custom_logging_functions","distribution_functions","example_notebooks","functions","grid","grid_options_defaults","grid_options_descriptions","hpc_functions","index","modules","notebook_api_functionality","notebook_custom_logging","notebook_extra_features","notebook_individual_systems","notebook_population","plot_functions","readme_link","run_system_wrapper","spacing_functions","stellar_types","useful_funcs"],envversion:{"sphinx.domains.c":2,"sphinx.domains.changeset":1,"sphinx.domains.citation":1,"sphinx.domains.cpp":3,"sphinx.domains.index":1,"sphinx.domains.javascript":2,"sphinx.domains.math":2,"sphinx.domains.python":2,"sphinx.domains.rst":2,"sphinx.domains.std":1,"sphinx.ext.todo":2,"sphinx.ext.viewcode":1,nbsphinx:3,sphinx:56},filenames:["binary_c_parameters.rst","custom_logging_functions.rst","distribution_functions.rst","example_notebooks.rst","functions.rst","grid.rst","grid_options_defaults.rst","grid_options_descriptions.rst","hpc_functions.rst","index.rst","modules.rst","notebook_api_functionality.ipynb","notebook_custom_logging.ipynb","notebook_extra_features.ipynb","notebook_individual_systems.ipynb","notebook_population.ipynb","plot_functions.rst","readme_link.rst","run_system_wrapper.rst","spacing_functions.rst","stellar_types.rst","useful_funcs.rst"],objects:{"binarycpython.utils":{custom_logging_functions:[1,0,0,"-"],distribution_functions:[2,0,0,"-"],functions:[4,0,0,"-"],grid:[5,0,0,"-"],grid_options_defaults:[6,0,0,"-"],hpc_functions:[8,0,0,"-"],plot_functions:[16,0,0,"-"],run_system_wrapper:[18,0,0,"-"],spacing_functions:[19,0,0,"-"],stellar_types:[20,0,0,"-"],useful_funcs:[21,0,0,"-"]},"binarycpython.utils.custom_logging_functions":{autogen_C_logging_code:[1,1,1,""],binary_c_log_code:[1,1,1,""],binary_c_write_log_code:[1,1,1,""],compile_shared_lib:[1,1,1,""],create_and_load_logging_function:[1,1,1,""],from_binary_c_config:[1,1,1,""],return_compilation_dict:[1,1,1,""]},"binarycpython.utils.distribution_functions":{"const":[2,1,1,""],Arenou2010_binary_fraction:[2,1,1,""],Izzard2012_period_distribution:[2,1,1,""],Kroupa2001:[2,1,1,""],Moe_di_Stefano_2017_multiplicity_fractions:[2,1,1,""],Moe_di_Stefano_2017_pdf:[2,1,1,""],build_q_table:[2,1,1,""],calc_P_integral:[2,1,1,""],calc_e_integral:[2,1,1,""],calc_total_probdens:[2,1,1,""],calculate_constants_three_part_powerlaw:[2,1,1,""],cosmic_SFH_madau_dickinson2014:[2,1,1,""],duquennoy1991:[2,1,1,""],fill_data:[2,1,1,""],flat:[2,1,1,""],flatsections:[2,1,1,""],gaussian:[2,1,1,""],gaussian_func:[2,1,1,""],gaussian_normalizing_const:[2,1,1,""],get_integration_constant_q:[2,1,1,""],get_max_multiplicity:[2,1,1,""],imf_chabrier2003:[2,1,1,""],imf_scalo1986:[2,1,1,""],imf_scalo1998:[2,1,1,""],imf_tinsley1980:[2,1,1,""],interpolate_in_mass_izzard2012:[2,1,1,""],ktg93:[2,1,1,""],linear_extrapolation_q:[2,1,1,""],merge_multiplicities:[2,1,1,""],normalize_dict:[2,1,1,""],number:[2,1,1,""],poisson:[2,1,1,""],powerlaw:[2,1,1,""],powerlaw_constant:[2,1,1,""],powerlaw_extrapolation_q:[2,1,1,""],prepare_dict:[2,1,1,""],raghavan2010_binary_fraction:[2,1,1,""],sana12:[2,1,1,""],set_opts:[2,1,1,""],three_part_powerlaw:[2,1,1,""]},"binarycpython.utils.functions":{BinaryCEncoder:[4,2,1,""],Capturing:[4,2,1,""],binarycDecoder:[4,2,1,""],binaryc_json_serializer:[4,1,1,""],call_binary_c_config:[4,1,1,""],catchtime:[4,2,1,""],convert_bytes:[4,1,1,""],count_keys_recursive:[4,1,1,""],create_arg_string:[4,1,1,""],create_hdf5:[4,1,1,""],custom_sort_dict:[4,1,1,""],example_parse_output:[4,1,1,""],extract_ensemble_json_from_string:[4,1,1,""],filter_arg_dict:[4,1,1,""],format_ensemble_results:[4,1,1,""],get_arg_keys:[4,1,1,""],get_defaults:[4,1,1,""],get_help:[4,1,1,""],get_help_all:[4,1,1,""],get_help_super:[4,1,1,""],get_moe_di_stefano_dataset:[4,1,1,""],get_size:[4,1,1,""],handle_ensemble_string_to_json:[4,1,1,""],imports:[4,1,1,""],inspect_dict:[4,1,1,""],is_capsule:[4,1,1,""],load_logfile:[4,1,1,""],make_build_text:[4,1,1,""],merge_dicts:[4,1,1,""],multiply_values_dict:[4,1,1,""],output_lines:[4,1,1,""],parse_binary_c_version_info:[4,1,1,""],recursive_change_key_to_float:[4,1,1,""],recursive_change_key_to_string:[4,1,1,""],remove_file:[4,1,1,""],return_binary_c_version_info:[4,1,1,""],subtract_dicts:[4,1,1,""],temp_dir:[4,1,1,""],update_dicts:[4,1,1,""],verbose_print:[4,1,1,""],write_binary_c_parameter_descriptions_to_rst_file:[4,1,1,""]},"binarycpython.utils.functions.BinaryCEncoder":{"default":[4,3,1,""]},"binarycpython.utils.functions.Capturing":{__enter__:[4,3,1,""],__exit__:[4,3,1,""]},"binarycpython.utils.functions.binarycDecoder":{decode:[4,3,1,""]},"binarycpython.utils.functions.catchtime":{__enter__:[4,3,1,""],__exit__:[4,3,1,""]},"binarycpython.utils.grid":{Population:[5,2,1,""]},"binarycpython.utils.grid.Population":{Moe_di_Stefano_2017:[5,3,1,""],add_grid_variable:[5,3,1,""],evolve:[5,3,1,""],evolve_single:[5,3,1,""],export_all_info:[5,3,1,""],parse_cmdline:[5,3,1,""],return_all_info:[5,3,1,""],return_binary_c_defaults:[5,3,1,""],return_binary_c_version_info:[5,3,1,""],return_population_settings:[5,3,1,""],set:[5,3,1,""],set_moe_di_stefano_settings:[5,3,1,""],write_binary_c_calls_to_file:[5,3,1,""]},"binarycpython.utils.grid_options_defaults":{grid_options_description_checker:[6,1,1,""],grid_options_help:[6,1,1,""],print_option_descriptions:[6,1,1,""],write_grid_options_to_rst_file:[6,1,1,""]},"binarycpython.utils.plot_functions":{color_by_index:[16,1,1,""],dummy:[16,1,1,""],parse_function_hr_diagram:[16,1,1,""],parse_function_masses:[16,1,1,""],parse_function_orbit:[16,1,1,""],plot_HR_diagram:[16,1,1,""],plot_masses:[16,1,1,""],plot_orbit:[16,1,1,""],plot_system:[16,1,1,""]},"binarycpython.utils.run_system_wrapper":{run_system:[18,1,1,""]},"binarycpython.utils.spacing_functions":{"const":[19,1,1,""]},"binarycpython.utils.useful_funcs":{calc_period_from_sep:[21,1,1,""],calc_sep_from_period:[21,1,1,""],maximum_mass_ratio_for_RLOF:[21,1,1,""],minimum_period_for_RLOF:[21,1,1,""],minimum_separation_for_RLOF:[21,1,1,""],ragb:[21,1,1,""],roche_lobe:[21,1,1,""],rzams:[21,1,1,""],zams_collision:[21,1,1,""]}},objnames:{"0":["py","module","Python module"],"1":["py","function","Python function"],"2":["py","class","Python class"],"3":["py","method","Python method"]},objtypes:{"0":"py:module","1":"py:function","2":"py:class","3":"py:method"},terms:{"000":14,"0000":14,"000000000000e":14,"0001":[11,21],"000116989":15,"000121486":15,"000150087":15,"000154349":15,"000157195":15,"000172877":15,"000211219":15,"00028381":15,"000381347":15,"000512406":15,"000610573":15,"000627913":15,"000688507":15,"0007":2,"000925128":15,"001":[0,11],"00124307":15,"00167028":15,"00224431":15,"00498":15,"005444573822104362":15,"00632092":11,"006827156705e":15,"007109286263e":15,"0073157281034221516":15,"009829948023831718":15,"013208238029791246":15,"01344":15,"0141":11,"0144107":15,"015033359333e":15,"0154":15,"017435498578e":15,"027099358410e":15,"041660877905e":12,"041662558619e":12,"041662560111e":12,"041662564579e":12,"04459e":15,"047074050271e":15,"05150046619238191":15,"05150046619238192":15,"05193":15,"054":2,"055645404546e":15,"0587":15,"069363482023e":15,"069567332611e":15,"069626478211e":15,"069627290216e":15,"07011e":15,"074084349384e":15,"075844624794e":15,"07671":15,"0820":[0,11],"08519":15,"08624781646269201":15,"0862478164626921":15,"087296558990e":15,"08861e":15,"08873e":15,"08msun":[0,11],"0902":[0,11],"09216":15,"093caf0e9":0,"0x7f163859d0c0":11,"0x7f9265091598":[],"0x7fb4d41ebbf8":14,"0x7ff3bdf79620":15,"100":[0,2,11],"1000":[0,7],"10328":15,"10417":15,"10433":15,"10446":15,"104706358826e":15,"1048014407228":15,"1085":14,"108751340926e":15,"11003":14,"112":15,"11282":15,"115":2,"11582":14,"117519147635e":15,"119":15,"120000":0,"12303":15,"12325":14,"12457":14,"12460":14,"12461":14,"12462":[],"125":[0,11,15],"12500":0,"126828648362e":15,"12e":[1,12,14,15],"1300":[],"1301":14,"1302":14,"13461":14,"13462":[],"1357":12,"13876":15,"13e3":[0,11],"1403":2,"14057":12,"14059":12,"14461":14,"14462":[],"146421815741e":15,"150":15,"15000":[0,11,12,14,15],"1506841305680684":15,"15343":15,"1564":15,"15854":15,"15875":15,"15msun":2,"1612":[],"1613":[],"1614":[],"1615":[],"1616":[],"1617":14,"1618":14,"1619":14,"1620":14,"1621":14,"1628444120":15,"1628444121":15,"170425790780e":15,"170770422321e":15,"170770599495e":15,"170775828562e":15,"17089":14,"171086983243e":15,"171108213270e":15,"172196856333e":15,"17639":15,"18838":15,"18914e":15,"190":0,"19314":12,"194842917007e":15,"1951":[0,11],"1972":[0,11],"1975":[0,11],"197x":[0,11],"1980":2,"1983":21,"1986":[0,2,11],"1989":[0,11],"1991":2,"1992":0,"1993":[0,11],"1996":21,"1998":[0,2,11],"1999":[0,11],"1ckzg0p9":[9,17],"1e2":[0,11],"1e9":[0,11],"200":[0,11],"2000":[0,11],"2001":2,"2002":[0,11],"2003":[0,2,11],"2004":[0,11],"2005":[0,11],"2009":[0,11],"2010":[0,2,7,11],"2012":[0,2,11],"2013":[0,11],"2014":[0,2,11],"2015":[0,11],"2016":[0,11],"2017":[0,7,11,15],"2018":[0,1,11],"2019":[0,11],"2020":[0,11],"2021":0,"20210807":[],"20210825":0,"20484":15,"206771867883e":15,"20787":15,"21331":15,"21473":15,"21673":15,"2174":15,"21805":15,"21878":15,"218786094847e":15,"21892":15,"21893":15,"222715508467e":15,"22723621650191106":15,"22759":15,"230407246199e":15,"232906623449e":15,"234709":15,"23604":15,"2383":[],"2424":14,"24954e":15,"25294":15,"2535":15,"255":0,"257":21,"25msun":[0,11],"27442":15,"27563":15,"27565":15,"27572":15,"27804":15,"278384712062e":15,"281":21,"28672":15,"29402e":15,"29444":15,"294870923827e":15,"29678":15,"2969346":2,"29746":15,"2983275843337705":15,"29864":15,"29942":15,"29977":15,"29994":15,"2a7732d03e594ef4b5dfe9051b41d9c0":15,"2msun":[0,11],"3000":[0,11],"30145":15,"30149":15,"30197":15,"3032":15,"30337":15,"30504":15,"30e4":[0,11],"31004":15,"315554923168e":15,"3177":15,"32047":15,"3205":15,"32641e":15,"33062":15,"33079":15,"33524":12,"337250536639e":15,"34071e":15,"34281":15,"34903":15,"34922":15,"34937":15,"350021848285e":15,"35209":15,"3552":15,"364277535630e":15,"3678":15,"3680f3882c0a449c944462abffea2447":15,"36979":15,"36m":11,"38004":15,"38063":12,"3836":15,"38403":15,"38887e":15,"3933":15,"3msun":2,"4000":0,"4046":15,"40513":15,"40745":15,"40749":15,"40935":15,"41074":15,"41264":15,"41295e":15,"42148e":15,"42212":15,"42238":15,"42375":15,"42msun":[0,11],"43925":15,"439623364590e":15,"4424":15,"446":12,"449960890183e":15,"44msun":[0,11],"4500":11,"45000000080":15,"4530":[12,14],"458869865939e":15,"459153942631e":15,"45msun":[0,11],"4603":15,"47276":15,"47961":15,"47976e":15,"4838":14,"48488":15,"4e3":[0,11],"500":[0,11],"5102526289471614":15,"513216011269e":15,"517749":14,"518":14,"522806":[],"523":[],"525":15,"527722847382e":15,"52963":15,"53113":15,"53174":15,"53175":15,"53176":15,"53177":15,"53183":15,"53184":15,"5357":15,"53631":15,"53922":15,"546683":14,"556479830908e":15,"55924":15,"561265707015991":15,"56776":15,"5689":15,"571858031651e":15,"575":15,"577754":[],"59052":15,"59499":15,"5msun":[0,11],"6000":0,"600000":0,"60808":15,"6101":[],"61349":12,"6162":0,"6246354579925537":15,"62486":15,"625":0,"62517":15,"635":0,"64419":15,"65097":15,"653200958306e":15,"67365":[],"687368550125e":15,"68933e":15,"693213405973e":15,"6944":0,"6e1":2,"6e5":[0,11],"6msun":[0,11],"70319":15,"70668e":15,"71025":15,"71288":15,"716":14,"7197":15,"721374713429e":15,"723547465714e":15,"723570798020e":15,"72498e":[12,15],"72638":15,"726405299909e":15,"730":[12,15],"73221":15,"733614170983e":15,"733794947644e":15,"733865371895e":15,"7358":[11,12],"73856":15,"74037":12,"7431":15,"750574783854e":15,"753837732894e":15,"7619":0,"763":2,"764340254985e":15,"765535914728e":15,"765996194699e":15,"76647":15,"766606588165e":15,"768305081494e":15,"773581245005e":12,"774":[],"7797017097473145":15,"78096":15,"78125":0,"783":14,"78384":15,"79411e":15,"795":2,"797342083485e":15,"802132608769e":15,"80457":15,"806014211040e":15,"806123543037e":15,"807147339697e":15,"80msol":2,"81391":15,"8162e":15,"817":14,"8178":15,"81906":15,"82242e":15,"84162":15,"853070305680e":15,"85486":15,"862081089332e":15,"8628":15,"862942347290e":15,"863377990313e":15,"867655467480e":15,"878236827680e":12,"881529045940e":15,"88566":15,"8955":[],"917420996633e":15,"92267":12,"922967341481e":15,"931266944719e":15,"93135e":15,"933751523833e":15,"94027":15,"941017702765e":15,"9458":14,"9514":[],"9545065608702976":15,"9713":15,"97286e":15,"974759306305e":15,"97823":15,"9791":15,"980988739731e":15,"9863e":15,"990017992944e":15,"99198":12,"99255":15,"99283":15,"9947":14,"99471":15,"9983":14,"boolean":[0,4,5,7,11,16,21],"break":[0,11],"case":[0,4,7,11,15],"catch":[4,7,14,15],"char":7,"class":[4,5],"const":[2,5,15,19],"default":[0,1,2,4,5,6,7,11,12,13,15,18],"export":[4,5,15],"float":[0,2,4,11,13,14,19,21],"function":[0,1,2,3,5,6,7,8,9,10,12,16,17,18,19,21],"import":[4,5,11,12,13,14,15],"int":[0,1,2,4,5,6,7,11,15,19,21],"krtickov\u00e1":0,"kub\u00e1t":0,"long":[0,4,5,7,11,15,20],"new":[0,2,4,5,11,14,15],"null":[0,4,11,12,13],"paczy\u0144ski":[0,11],"public":[6,9,15],"return":[1,2,4,5,6,7,11,13,14,15,16,18,19,21],"short":[0,11,20],"super":[0,11],"switch":[0,11],"throw":[9,17],"true":[0,4,5,6,7,11,13,15,16],"try":[0,9,11,14,15,17],"void":12,"while":[0,11],Added:15,Adding:[3,14],And:[6,9,17,21],But:14,Doing:15,For:[0,4,9,11,12,14,16,17],Gas:[0,11],Its:7,NOT:[0,11,18],Not:7,One:[0,11],Pms:16,That:[0,11],The:[0,1,2,3,4,5,7,9,11,12,13,14,15,16,17,18],Then:[4,9,17],There:[2,5,6,7,11,12,13,14,15,16],These:[4,7,11,15,16],Use:[0,5,11,15],Used:[0,7,11,16],Useful:[0,5,6,11,15],Uses:[0,11,19],Using:[3,9],Was:[0,11],Will:[0,4,5,11,15,18],With:6,__arg_begin:11,__attribute__:12,__enter__:4,__exit__:4,_actually_evolve_system:7,_binary_c_bind:[4,11,12,14,21],_binary_c_config_execut:7,_binary_c_dir:7,_binary_c_execut:7,_binary_c_shared_librari:7,_calculate_multiplicity_fract:15,_commandline_input:7,_count:7,_custom_logging_shared_library_fil:7,_end_time_evolut:7,_errors_exceed:7,_errors_found:7,_evolution_type_opt:7,_failed_count:7,_failed_prob:7,_failed_systems_error_cod:7,_generate_grid_cod:7,_grid_vari:7,_loaded_ms_data:7,_main_pid:7,_population_id:7,_probtot:7,_process_run_population_grid:7,_repeat:7,_set:5,_set_ms_grid:7,_start_time_evolut:7,_store_memaddr:7,_system_gener:7,_total_mass_run:7,_total_probability_weighted_mass_run:7,_total_starcount:7,_zero_prob_stars_skip:7,a173:0,abat:[0,11],abbrevi:20,abl:11,about:[3,4,5,6,15,21],abov:[0,2,4,5,11,12,14,15],abridg:[11,12],absolut:[0,11],abund:[0,11],acceler:[0,11],accept:[4,11,15],access:[2,7,12,14,15],accord:[0,2,11],accordingli:[14,15],account:[0,7,11],accret:[0,11],accretion_limit_dynamical_multipli:[0,11],accretion_limit_eddington_lmms_multipli:[0,11],accretion_limit_eddington_steady_multipli:[0,11],accretion_limit_eddington_wd_to_remnant_multipli:[0,11],accretion_limit_thermal_multipli:[0,11],accretor:[0,11,21],act:[0,7,11,15],activ:[0,9,11,17],actual:[0,4,5,7,9,11,12,14,15,16,17],adam:[0,11],adapt:[0,11],add:[0,2,4,5,7,12,14,15,16,19,21],add_grid_vari:[5,15],added:[4,14],adding:[14,15],address:[1,7,11,12,21],admittedli:16,adress:[11,12,21],advis:12,affect:[0,11],after:[0,5,7,11,12,15],ag89:[0,11],again:[4,7,9,13,14,17],against:16,agb:[0,11],agb_3dup_algorithm:[0,11],agb_core_algorithm:[0,11],agb_core_algorithm_default:0,agb_core_algorithm_hurlei:0,agb_core_algorithm_karaka:0,agb_luminosity_algorithm:[0,11],agb_luminosity_algorithm_default:0,agb_luminosity_algorithm_hurlei:0,agb_luminosity_algorithm_karaka:0,agb_radius_algorithm:[0,11],agb_radius_algorithm_default:0,agb_radius_algorithm_hurlei:0,agb_radius_algorithm_karaka:0,agb_third_dredge_up_algorithm_default:0,agb_third_dredge_up_algorithm_hurlei:0,agb_third_dredge_up_algorithm_karaka:0,agb_third_dredge_up_algorithm_stancliff:0,age:[0,11],aging:[0,11],albedo:[0,11],algorithm:[9,11],algothim:[0,11],all:[0,1,2,4,5,6,7,9,10,11,13,14,15,16,17,18],all_info:5,alloc:11,allow:[0,2,4,7,11,12],allow_nan:4,along:[0,6,7],alpha:[0,11],alpha_c:[0,11],alphacb:[0,11],alreadi:[5,15],also:[0,3,4,5,6,9,11,12,15,17,21],altern:[0,7,11],alwai:[0,2,7,11],amanda:[0,11],amax:2,amin:2,amount:[0,4,5,6,7,11,15,19],amp:11,amt_cor:[7,15],analys:18,analyt:[5,15],analyz:14,andrew:[9,17],andronov:[0,11],angelou_lithium_cheb_decay_tim:[0,11],angelou_lithium_cheb_massfrac:[0,11],angelou_lithium_cheb_tim:[0,11],angelou_lithium_decay_funct:[0,11],angelou_lithium_decay_tim:[0,11],angelou_lithium_eagb_decay_tim:[0,11],angelou_lithium_eagb_massfrac:[0,11],angelou_lithium_eagb_tim:[0,11],angelou_lithium_gb_decay_tim:[0,11],angelou_lithium_gb_massfrac:[0,11],angelou_lithium_gb_tim:[0,11],angelou_lithium_hg_decay_tim:[0,11],angelou_lithium_hg_massfrac:[0,11],angelou_lithium_hg_tim:[0,11],angelou_lithium_lmms_decay_tim:[0,11],angelou_lithium_lmms_massfrac:[0,11],angelou_lithium_lmms_tim:[0,11],angelou_lithium_ms_decay_tim:[0,11],angelou_lithium_ms_massfrac:[0,11],angelou_lithium_ms_tim:[0,11],angelou_lithium_tpagb_decay_tim:[0,11],angelou_lithium_tpagb_massfrac:[0,11],angelou_lithium_tpagb_tim:[0,11],angelou_lithium_vrot_trigg:[0,11],angelou_lithium_vrotfrac_trigg:[0,11],angular:[0,11,16],ani:[0,2,4,5,9,11,14,15,17],anoth:[0,11],ansi:[0,11],ansi_colour:0,anyth:[0,7,11,15],anywai:[5,14,15],anywher:[5,15],api:[0,3,4,9],api_log_filename_prefix:[0,11,14],append:[1,4,14],appli:[0,11],apply_darwin_radau_correct:0,appropri:[0,7,11],approxim:[0,11],aren:[2,7],arenou2010_binary_fract:2,arg:[2,4,11,13,15,16],arg_dict:4,argopt:[0,11],argpair:[4,13],argstr:[11,12,14],argument:[0,2,4,5,7,11,14,15,18],argument_of_periastron:[0,11],argument_of_periastron_quadrupl:[0,11],argument_of_periastron_tripl:[0,11],around:[0,11,12,14],arrai:[2,4,7,14],arrow:0,artifici:[0,11],artificial_accretion_end_tim:[0,11],artificial_accretion_ignor:0,artificial_accretion_start_tim:[0,11],artificial_angular_momentum_accretion_r:[0,11],artificial_mass_accretion_r:[0,11],artificial_orbital_angular_momentum_accretion_r:[0,11],arxiv:[0,2,11],ask:[0,11,21],asplund:[0,11],assign:[5,15],assum:[0,11,16],ast871:[0,11],astronomi:[0,11],astropi:[9,16,17],atom:4,attempt:[4,5],aug:0,auto:[1,10],autogen_c_logging_cod:[1,12],automat:[0,1,6,9,11,12,17],avaibl:[9,17],avail:[0,4,7,11,12,15,16],avoid:11,awai:[0,11],axi:[0,11,16],b_1:[0,11],b_2:[0,11],b_3:[0,11],b_4:[0,11],b_inclination1:[0,11],b_inclination2:[0,11],b_inclination3:[0,11],b_inclination4:[0,11],back:[0,4,11],backward:[0,11],bagb:[0,11],barn:[0,11],base:[0,2,4,5,9,11,15,16,17,21],base_filenam:[5,15],basic:[5,15],batchmod:[0,11],beasor:[0,11],becaus:[0,2,5,7,9,11,14,17],becom:[0,1,2,4,11,12],been:[0,5,7,11,13],befor:[0,5,7,9,11,15,17],behaviour:[4,15,18],belczynski:[0,11],below:[0,3,7,11,12,15],berro:[0,11],bertolami:[0,11],best:[5,7,9,17],beta:[0,11],beta_reverse_nova:[0,11],beta_reverse_novae_geometri:0,better:[0,4,5,11,15],between:[0,2,11,19],bewar:[5,15],bh_belczynski:0,bh_fryer12_delai:0,bh_fryer12_rapid:0,bh_fryer12_startrack:0,bh_hurley2002:0,bh_prescript:[0,11],bh_spera2015:0,big:[0,7,11],biinari:15,bin:[0,9,11,17],binari:[2,5,7,9,11,14,15,16,17,21],binary_c2:[9,17],binary_c:[1,2,3,4,5,7,12,14,15,16,18],binary_c_api_funct:12,binary_c_cal:[5,15],binary_c_default:15,binary_c_grid_2a7732d03e594ef4b5dfe9051b41d9c0:15,binary_c_inline_config:1,binary_c_log_cod:[1,12,14],binary_c_macro:[0,11],binary_c_output:4,binary_c_paramet:[0,11,15],binary_c_python:[4,5,11,14,15],binary_c_task_:[0,11],binary_c_write_log_cod:1,binary_grid:[0,11],binary_star:21,binaryc:[1,4,13,18],binaryc_config:1,binaryc_json_seri:4,binarycdecod:4,binarycencod:4,binarycpython3:11,binarycpython:[1,2,3,4,5,6,9,16,17,18,19,21],binarygrid:15,bind:[0,11,12,14],birth:[0,11],bit:2,bivari:[0,11],black:[0,11],black_hol:0,bloecker:[0,11],blog:1,boltzman:16,boltzmann:[0,11],bondi:[0,11],bondi_hoyle_accretion_factor:[0,11],bool:[4,5,6,13,15,16],born:[0,11],bosswissam:4,both:[0,4,11,15],bottom:[0,11,15],bound:[2,19],boundari:2,brake:[0,11],branch:[0,4,11],branch_david:0,branchpoint:[5,15],breakup:[0,11],broken:[0,11],bse:[0,2,11,12,15],bse_opt:[5,14,15],bsf:[0,11],buffer:[0,11],build:[0,1,3,4,11],build_q_tabl:2,built:[0,1,4,9,13,17],burn:[0,11],busso:[0,11],bye:[0,11],c13_eff:[0,11],c5232be5c:[],c_auto_log:7,c_log:0,c_logging_cod:[7,12,14,15],calc_e_integr:2,calc_p_integr:2,calc_period_from_sep:21,calc_sep_from_period:[15,21],calc_total_probden:2,calcul:[0,2,4,5,7,11,15,21],calculate_constants_three_part_powerlaw:2,call:[0,1,4,5,7,11,13,14,15,16,18],call_binary_c_config:4,calls_filenam:15,can:[0,1,2,4,5,7,9,11,12,13,14,15,16,17,18],cannot:[5,12],canon:7,cap:[0,11],capsul:[1,4,11],captur:[0,4,11],carbon:[0,11],carbon_oxygen_white_dwarf:0,carlo:[0,7,11],carrasco:[0,11],carri:[0,11],cast:[4,13],catchtim:4,categor:11,categori:[11,15],categoris:4,caught:[4,14],caus:21,cbdisc:[0,11],cbdisc_albedo:[0,11],cbdisc_alpha:[0,11],cbdisc_eccentricity_pumping_dermin:0,cbdisc_eccentricity_pumping_method:[0,11],cbdisc_eccentricity_pumping_non:0,cbdisc_end_evolution_after_disc:[0,11],cbdisc_fail_ring_inside_separ:[0,11],cbdisc_gamma:[0,11],cbdisc_init_djdm:[0,11],cbdisc_init_dm:[0,11],cbdisc_inner_edge_strip:[0,11],cbdisc_inner_edge_stripping_timescal:[0,11],cbdisc_kappa:[0,11],cbdisc_mass_loss_constant_r:[0,11],cbdisc_mass_loss_fuv_multipli:[0,11],cbdisc_mass_loss_inner_l2_cross_multipli:[0,11],cbdisc_mass_loss_inner_viscous_accretion_method:[0,11],cbdisc_mass_loss_inner_viscous_accretion_method_equ:0,cbdisc_mass_loss_inner_viscous_accretion_method_gerosa_2015:0,cbdisc_mass_loss_inner_viscous_accretion_method_non:0,cbdisc_mass_loss_inner_viscous_accretion_method_young_clarke_2015:0,cbdisc_mass_loss_inner_viscous_angular_momentum_multipli:[0,11],cbdisc_mass_loss_inner_viscous_multipli:[0,11],cbdisc_mass_loss_ism_pressur:[0,11],cbdisc_mass_loss_ism_ram_pressure_multipli:[0,11],cbdisc_mass_loss_xray_multipli:[0,11],cbdisc_max_lifetim:[0,11],cbdisc_minimum_evaporation_timescal:[0,11],cbdisc_minimum_fr:[0,11],cbdisc_minimum_luminos:[0,11],cbdisc_minimum_mass:[0,11],cbdisc_no_wind_if_cbdisc:[0,11],cbdisc_outer_edge_strip:[0,11],cbdisc_outer_edge_stripping_timescal:[0,11],cbdisc_resonance_damp:[0,11],cbdisc_resonance_multipli:[0,11],cbdisc_torquef:[0,11],cbdisc_viscous_l2_coupl:[0,11],cbdisc_viscous_photoevaporative_coupl:[0,11],cbdisc_viscous_photoevaporative_coupling_inst:[0,11],cbdisc_viscous_photoevaporative_coupling_non:[0,11],cbdisc_viscous_photoevaporative_coupling_visc:[0,11],cee:[0,11],cell:[11,15],cemp:[0,11],cemp_cfe_minimum:[0,11],center:15,centr:5,central_object:[0,11],certain:[7,9,17],cf_amanda_log:[0,11],cflag:[9,17],chabrier:2,chandrasekhar:[0,11],chandrasekhar_mass:[0,11],chang:[0,1,2,4,5,6,7,9,11,12,15,17],chapter:[0,7,10],cheb:[0,11],check:[0,2,4,5,6,11,15,21],check_circular:4,chemic:[0,11],chen:[0,11],child:4,choic:[0,2,11,16],choos:[0,11,12,16],chose:14,chosen:[5,15],circular:[0,11],circumbinari:[0,11],circumstanti:[0,11],claei:[0,11],clark:[0,11],clean:[1,5,9,14,17],clean_up_custom_logging_fil:5,clear:4,clock:4,clone:[9,17],close:[0,11],cloud:[0,11],cls:4,cluster:8,cmdline:5,code:[0,1,5,6,9,11,12,14,15,16,17,18],collaps:[0,11],collapsar:[0,11],collect:21,collid:21,color:16,color_by_index:16,colour:[0,11],colour_log:[0,11],column:[14,15,16],column_nam:14,com:[1,4],combin:[1,4,5,7,12],combine_ensemble_with_thread_join:7,come:[2,9,17,19],comenv_bs:0,comenv_disc_angmom_fract:[0,11],comenv_disc_mass_fract:[0,11],comenv_ejection_spin_method:[0,11],comenv_ejection_spin_method_do_noth:[0,11],comenv_ejection_spin_method_sychron:[0,11],comenv_ejection_spin_method_synchron:0,comenv_merger_spin_method:[0,11],comenv_merger_spin_method_breakup:0,comenv_merger_spin_method_conserve_angmom:[0,11],comenv_merger_spin_method_conserve_omega:[0,11],comenv_merger_spin_method_specif:[0,11],comenv_ms_accret:[0,11],comenv_ms_accretion_fract:[0,11],comenv_ms_accretion_mass:[0,11],comenv_nandez2016:0,comenv_nelemans_tout:0,comenv_ns_accret:[0,11],comenv_ns_accretion_fract:[0,11],comenv_ns_accretion_mass:[0,11],comenv_post_eccentr:[0,11],comenv_prescript:[0,11],comenv_splitmass:[0,11],comenv_undef:0,command:[0,1,5,7,9,11,15,17],commandlin:15,comment:15,commit:4,common:[0,11,12,14,15],compact:15,companion:[0,11],compar:[0,7,11,15],compil:[1,9,12,15,17],compile_shared_lib:1,complet:15,complex:[5,7,12,15,16],compon:[4,16],comput:[0,8,11],condit:[5,12,15],condor:[5,7,8],condor_grid:5,config:[1,4,7,9,17],config_fil:1,configur:[2,5,14,15],conjunct:13,conserv:[0,11],consid:[0,1,2,4,5,7,11,16],constant:[0,2,11,16],construct:[0,1,11,14,15],contain:[0,1,2,4,5,6,7,8,9,10,11,13,14,15,16,17,18,19,20],content:[3,4,9,11],context:4,continu:[5,15],control:[0,11,15],convect:[0,11],converg:[0,11],convert:[2,4,5],convert_byt:4,cool:[0,11],copi:[0,5,11,21],core:[0,5,7,11,15,16],core_co:12,core_h:12,core_helium_burn:0,core_mass:[0,11,12],correct:[0,2,5,14,16,21],correctli:[9,14,16,17],correspond:16,corretor:[0,11],cosmic:2,cosmic_sfh_madau_dickinson2014:2,could:[0,4,11,15],count:[4,7],count_keys_recurs:4,counter:7,coupl:[0,11],cours:16,cover:13,coverag:[9,17],cowd:[0,11],cpu:[0,11],cpython:11,crap_paramet:[0,11],creat:[2,4,5,12,14,15],create_and_load_logging_funct:[1,12],create_arg_str:4,create_hdf5:4,creation:11,critic:[0,11],cross:[0,11],ctype:1,cuntz:[0,11],current:[0,4,9,11,12,17],custom:[0,1,3,4,5,7,9,11,14,15,16,18],custom_log:[5,7,14],custom_logging_cod:[1,12,14,18],custom_logging_func_memaddr:[7,11,12],custom_logging_funct:[7,9,10,12,14,15],custom_logging_info:5,custom_logging_memaddr:12,custom_logging_print_stat:14,custom_logging_stat:15,custom_opt:[5,14,15],custom_output_funct:12,custom_sort_dict:4,custom_tmp_dir:1,customis:16,cvode:[0,11],d20a4c74d20a43b881c0c9e5def5f76c:15,dai:[0,2,11,12,14,15,21],damp:[0,11],darwin:0,dat:[0,4,15],data:[0,4,5,7,11,14,15,18],data_dict:2,data_dir:[4,5,7,15],datadir:[5,15],datafram:[14,16],dataset:[4,15],date:5,david:[0,9,11,17],david_logging_funct:[0,11],dd7:[0,11],deactiv:[0,11],deal:[4,14],death:[0,11],debug:[0,7,11,15],decai:[0,11],decid:[0,4,11,12],decod:4,decreas:[0,11],deeper:[5,15],def:[14,15],default_to_metal:[0,11],defaultdict:4,defer:[0,11],defin:[0,1,2,5,11,16],definit:[1,21],degener:[0,11],degre:[0,11],delai:0,delta_mcmin:[0,11],den:[0,11],densiti:2,depend:[0,2,9,11,16,17],deprec:[0,11],dermin:[0,11],describ:[0,2,7,11],descript:[0,2,4,7,9,10,11,13],design:[5,16],desir:[0,11],destruct:[5,15],detail:[0,4,11,14],detect:[0,11],determin:[0,5,11,12,15,21],deton:[0,11],dev:[0,11],develop:1,deviat:2,dewi:[0,11],dex:[0,11],diagnost:7,diagram:[0,11,16],dickonson:2,dict2:4,dict:[1,2,4,5,6,13,14,15,20],dict_1:4,dict_2:4,dict_kei:[13,14],dictionari:[1,2,3,4,5,6,7,15,16,20],did:[4,9,17],differ:[0,4,5,9,11,15,16,17],dimmer:[0,11],dir:[9,17],direct:[0,5,11],directli:[4,7,14],director:7,directori:[0,3,4,5,7,9,11,15,17],disabl:[0,11,15],disable_debug:[0,11],disable_end_log:[0,11],disable_ev:[0,11],disc:[0,11],disc_legacy_log:[0,11],disc_log2d:[0,11],disc_log:[0,11],disc_log_directori:[0,11],disc_log_dt:[0,11],disc_log_level_non:0,disc_log_level_norm:0,disc_log_level_normal_first_disc_onli:0,disc_log_level_subtimestep:0,disc_log_level_subtimestep_first_disc_onli:0,disc_n_monte_carlo_guess:[0,11],disc_stripping_timescale_infinit:0,disc_stripping_timescale_inst:0,disc_stripping_timescale_orbit:0,disc_stripping_timescale_visc:0,disc_timestep_factor:[0,11],discret:15,discs_circumbinary_from_comenv:[0,11],discs_circumbinary_from_wind:[0,11],disk:[0,5,11],dispers:[0,11],displai:[0,11],dist:[9,17],distefano:2,distribut:[0,2,5,8,11,15],distribution_funct:[9,10,15],divid:8,dlnm1:[5,15],dlog10per:15,dlogp:2,do_dry_run:7,doc:[4,6,9,15,17],doc_fetch:2,docstr:[9,14,16,17],document:[4,6,7,10,15],doe:[0,2,4,5,7,11,12,13,14,15,21],doesn:[5,7],doesnt:6,doing:[0,1,5,6,9,11,17],don:[2,4,7],done:[0,4,5,9,11,15,17],donor:[0,11,21],donor_limit_dynamical_multipli:[0,11],donor_limit_envelope_multipli:[0,11],donor_limit_thermal_multipli:[0,11],donor_rate_algorithm_bs:0,donor_rate_algorithm_claeys2014:0,dont:11,doubl:[12,15],down:15,dphasevol:[5,15],dr2:[0,11],dr3:[0,11],drai:[0,11],dredg:[0,11],drop:14,dry:7,dstep:2,dt_limit:13,dtfac:[0,11],dtlimit:4,dtm:[1,12,15],due:[9,17],dummi:[2,16],dump:[0,4,11,14],dumpvers:[0,11],duquennoi:2,duquennoy1991:2,dure:[0,11],dust:[0,11],dwarf:[0,11],dynam:[0,11],e2_hurley_2002:0,e2_izzard:0,e2_mint:0,e2_prescript:[0,11],each:[0,2,4,5,7,11,15],eagb:[0,11],eagb_wind_beasor_etal_2020:0,eagb_wind_bs:0,eagb_wind_goldman_etal_2017:0,eagbwind:[0,11],eagbwindfac:[0,11],earli:[0,11],early_asymptotic_giant_branch:0,easi:[4,14],easier:[4,15],ecc2:2,ecc3:2,ecc:[2,5,14,15],eccentr:[0,2,11,12,14,15,16,21],eccentric_rlof_model:[0,11],eccentricity_quadrupl:[0,11],eccentricity_tripl:[0,11],echo:[0,11],eddington:[0,11],edg:[0,5,11,15],edit:12,edu:[0,11],effect:[0,2,7,11,12],effective_metal:[0,11],effici:[0,11],egg:[9,17],eggleton:[0,11,21],either:[0,4,5,7,9,11,15,17,18],eject:[0,11],elabor:12,eld:[0,11],eldridg:[0,11],electon:[0,11],electron:[0,11],element:[0,1,4,7,11,13,16],els:12,email:4,emp:[0,11],emp_feh_maximum:[0,11],emp_logg_maximum:[0,11],emp_minimum_ag:[0,11],empti:[4,6,14],enabl:[0,11],encod:4,encount:7,end:[0,2,4,7,11],end_index:2,end_timestamp:15,energi:[0,11],enhanc:[0,11],enlarg:[0,11],enough:2,ensembl:[0,4,7,11,13],ensemble_def:[0,11],ensemble_dictionari:4,ensemble_dt:[0,11],ensemble_factor_in_probability_weighted_mass:7,ensemble_filter_:[0,11],ensemble_filters_off:[0,11],ensemble_json:4,ensemble_legacy_ensembl:[0,11],ensemble_list:5,ensemble_logdt:[0,11],ensemble_logtim:[0,11],ensemble_macro:[0,11],ensemble_output_:7,ensemble_startlogtim:[0,11],ensure_ascii:4,enter:[0,9,11,17],enthalpi:[0,11],entir:[12,14],entri:[4,5],env:[9,11,16,17],envelop:[0,11],equal:[0,4,15],equat:[0,11],equation_of_state_algorithm:[0,11],equation_of_state_paczynski:0,equatori:[0,11],equival:7,errno:[9,17],error:[0,4,7,9,11,15,17],errors_exceed:15,errors_found:15,esa:2,escap:[0,11],escape_fract:[0,11],escape_veloc:[0,11],eta:[0,11],etal:[0,11],etc:[0,4,5,8,9,11,14,15,16,17,18],euler:[0,11],evalu:[2,5,15,21],evan:[0,11],evapor:[0,11],evaporate_escaped_orbiting_object:[0,11],even:13,event:[0,11],everi:[0,9,11,17],everyth:[5,7,14,15],everytim:[9,17],evid:[0,11],evolut:[0,1,5,7,11,14,15,16],evolution_split:[0,11],evolution_splitting_maxdepth:[0,11],evolution_splitting_sn_eccentricity_threshold:[0,11],evolution_splitting_sn_n:[0,11],evolution_typ:[7,15],evolutionari:[0,11,14],evolv:[0,3,5,7,11,12],evolve_popul:15,evolve_singl:[5,12,14],exact:[1,4,7],exactli:[0,11],exampl:[1,2,4,5,14,18],example_above_m:12,example_compact_object:15,example_dco:15,example_df:14,example_head:4,example_log:18,example_log_co:[1,12],example_logging_string_co:12,example_logging_string_post_m:12,example_massloss:[12,14],example_output:14,example_parse_output:4,example_pop:[14,15],example_pop_set:15,example_python_population_result:15,example_sn:12,exce:[0,7,11],except:[4,5,6,7,11,15,16],execut:[0,5,7,9,11,15,17],exist:[0,5,6,11,15],exist_ok:[4,15],exit:[0,4,11],exp:[5,15],expand:[15,18],expect:[9,11,17],experiment:[0,4,11],explain:[3,4],explicitli:[0,1,11],explod:[0,11],explos:[0,11],expoenti:[0,11],expon:[0,11],export_all_info:[5,15],express:[0,11],extend:[0,9,17],extens:11,extern:[0,11],extra:[0,3,5,7,9,11,15,18],extra_text:6,extract:[4,15],extract_ensemble_json_from_str:4,extrapol:[2,7],fabian:[0,11],fabian_imf_log:[0,11],fabian_imf_log_tim:[0,11],fabian_imf_log_timestep:[0,11],factor:[0,2,4,7,11],fade:[0,11],fail:[0,4,7,9,11,17],fail_sil:4,failed_count:15,failed_prob:15,failed_system:7,failed_system_log:7,failed_systems_error_cod:15,failed_systems_threshold:7,failsaf:14,failur:[0,11],fallback:[0,12],fallback_mass:12,fals:[0,4,5,7,11,13,15,16],fancy_parsing_funct:18,far:[0,11],farmer:[0,11],fase:15,fast:[0,11],faster:15,favorit:14,featur:[3,9,15],feed:7,ferguson:[0,11],fetch:14,few:[0,11],field:[0,11],fig:[0,2,11],figur:[7,16],file:[0,1,4,5,6,7,8,9,11,14,15,16,17,18],file_log:[0,11],filehandl:6,filenam:[0,1,4,5,7,11,14,15,18],filenotfounderror:[9,17],filepath:1,fill:14,fill_data:2,filter:[0,4,11,13],filter_arg_dict:4,filter_valu:[4,13],fin:[0,11],find:[4,5,7,9,15,17],finish:[4,15,16],first:[0,2,4,5,9,11,14,15,17,21],first_giant_branch:0,fishlock:[0,11],fit:[0,2,4,5,11,14,21],fix:[0,2,4,5,11,14,15,16],flag:[0,1,4,7,11],flash:[0,11],flat:[2,7],flatsect:[2,15],flaw:5,float_overflow_check:[0,11],flto:[9,17],fold:2,follow:[0,2,4,7,9,11,12,16,17],forc:[0,9,11,17],force_circularization_on_rlof:[0,11],force_corotation_of_primary_and_orbit:[0,11],form:[0,4,5,6,11,15],formal:[0,11],format:[0,2,4,5,11,12,14,15],format_ensemble_result:4,formula:[0,11],forward:[0,11],found:[2,9,15,17],four:[0,11],fpic:1,fraction:[0,2,7,11,15],framework:11,free_persistent_data_memaddr_and_return_json_output:11,free_store_memaddr:11,frequenc:[0,11],friction:[0,11],fring:[0,11],from:[0,2,4,5,7,13,14,15,16,21],from_binary_c_config:1,fryer:0,ftz:[9,17],full:[3,4,7,12],full_path:4,further:[2,15],fuv:[0,11],gaia:[0,2,11],gaia_colour_transform_method:[0,11],gaia_conversion_ubvri_bivariate_jordi2010:[0,11],gaia_conversion_ubvri_riello2020:[0,11],gaia_conversion_ubvri_univariate_evans2018:[0,11],gaia_conversion_ubvri_univariate_jordi2010:[0,11],gaia_conversion_ugriz_bivariate_jordi2010:[0,11],gaia_conversion_ugriz_riello2020:[0,11],gaia_conversion_ugriz_univariate_evans2018:[0,11],gaia_conversion_ugriz_univariate_jordi2010:[0,11],gaia_l_binwidth:[0,11],gaia_teff_binwidth:[0,11],gain:7,galact:[0,11],gallino:[0,11],gamma:[0,11],gap:[0,11],garcia:[0,11],gauss:[0,11],gaussian:2,gaussian_func:2,gaussian_normalizing_const:2,gb_reimers_eta:[0,11],gb_wind_beasor_etal_2020:0,gb_wind_goldman_etal_2017:0,gb_wind_reim:0,gb_wind_schroeder_cuntz_2005:0,gbwind:[0,11],gbwindfac:[0,11],gcc:[1,9,17],gce:[0,11],gener:[0,1,2,4,5,6,7,11,12,14,15,16],general_info:4,generalis:2,geometr:[0,11],gerosa:[0,11],get:[0,2,3,4,5,6,9,12,14,15,17,18,21],get_arg_kei:4,get_default:[4,13],get_help:[4,13],get_help_al:[4,5,13],get_help_sup:[4,13],get_integration_constant_q:2,get_max_multipl:2,get_moe_di_stefano_dataset:4,get_siz:4,giant:[0,11],giant_branch:0,git:[0,4,15],git_branch:4,git_build:4,github:4,gitlab:9,give:[0,2,4,11,21],given:[0,1,2,4,5,7,11,18,21],global:[0,2,11],global_dict:2,gmax:2,gmin:2,gnu:11,goe:[0,4,5,11,12,14,16],gogo:[0,11],going:[9,17],goldman:[0,11],gonna:2,good:[0,7,11,14,15,21],gov:[0,11],gravit:[0,11,15],gravitational_radiation_bs:0,gravitational_radiation_bse_when_no_rlof:0,gravitational_radiation_landau_lifshitz:0,gravitational_radiation_landau_lifshitz_when_no_rlof:0,gravitational_radiation_model:[0,11],gravitational_radiation_modulator_:[0,11],gravitational_radiation_modulator_j:[0,11],gravitational_radiation_non:0,grb:[0,11],great:[0,11],greater:[0,11],grevess:[0,11],grid:[0,3,4,5,9,10,11,12,14],grid_class:[9,10],grid_cod:5,grid_opt:[5,7,14,15],grid_options_default:6,grid_options_defaults_dict:6,grid_options_descript:[6,15],grid_options_description_check:6,grid_options_help:6,grid_vari:[7,15],grid_variable_numb:15,gridcode_filenam:7,gridtyp:[5,15],group:4,gsl:[9,17],gsl_dir:[9,17],guess:[0,2,11],h5py:[9,17],hachisu:[0,11],hachisu_disk_wind:[0,11],hachisu_ignore_qcrit:0,hachisu_qcrit:[0,11],hack:6,had:5,half:[0,11],hall:[0,11],handi:[0,11],handl:[0,3,4,5,7,11,14,18,21],handle_ensemble_string_to_json:4,happen:[0,11],hardcod:[12,15],has:[0,1,4,5,7,11,12,13,15],have:[0,2,3,4,5,6,7,9,11,12,14,15,16,17],hbb:[0,11],hbbtfac:[0,11],hdf5:4,hdf5file:4,header:[1,4,12,14,15],headerlin:15,headlin:7,hegb:0,hehg:0,height:[2,15],helium:[0,11],helium_flash_mass_loss:[0,11],helium_white_dwarf:0,help:[0,3,4,6,11,14,15],help_al:[0,11],hem:0,henc:[0,11],hendrik:[9,17],here:[1,4,5,7,11,12,14,16],hertzsprung:[0,11],hertzsprung_gap:0,hertzstrpung:[0,11],heuvel:[0,11],hewd:[0,11],hewd_hewd_ignition_mass:[0,11],hex:7,high:[0,2,11],higher:[0,2,4,7,9,11,15,17],his:2,histori:2,hold:7,hole:[0,11],home:11,homogen:[0,11],hood:14,hopefulli:[0,11],hot:[0,11],how:[0,4,5,7,11,12,14,15],howev:[0,11,12,15],hoyl:[0,11],hpc:[5,8],hpc_function:[9,10],hr_diagram:16,hrd:[0,11],hrdiag:[0,11],hrdiag_output:[0,11],html:[9,15,17],http:[0,1,2,4,11,15],hurlei:[0,11],hut:[0,11],hybrid:[0,11],hydro:[0,11],hydrogen:[0,11],ibc:[0,11],id_cor:12,idea:[15,16],idum:[0,11],ignit:[0,11],ignor:[0,5,7,9,11,12,14,15,17],iia:[0,11],iloc:14,imf:[0,2,11],imf_chabrier2003:2,imf_scalo1986:2,imf_scalo1998:2,imf_tinsley1980:2,immedi:[0,11],implement:[0,5,7,11],impli:[0,11],impos:15,improv:2,inclin:[0,11],inclination1:[0,11],inclination2:[0,11],inclination3:[0,11],inclination4:[0,11],inclini:[0,11],incliniation_quadrupl:[0,11],incliniation_tripl:[0,11],includ:[0,1,2,4,5,9,11,12,14,15,16,17],include_binary_c_default:[5,15],include_binary_c_help_al:[5,15],include_binary_c_version_info:[5,15],include_default:[5,15],include_popul:15,include_population_set:5,incom:[0,11],increas:[0,11],inde:[0,11],indent:[4,14],index:[0,2,9,11,13,14],indic:[0,2,11],individu:[3,9],individual_nova:[0,11],induc:[0,11],inertia:[0,11],info:[4,5,9,11,13,15,16,17],inform:[0,1,3,4,5,6,12,14,15,16],init:5,init_abund:[0,11],init_abund_dex:[0,11],init_abund_mult:[0,11],init_abunds_onli:[0,11],initi:[0,2,5,11,13,14],initial_abundance_hash:5,initial_abundance_mix:[0,11],initial_abunds_onli:[0,11],initial_mass:14,inner:[0,11],input:[1,2,4,5,7,9,11,13,14,16,21],input_dict:4,insert:[5,15],insid:[0,11],inspect:[4,14,16],inspect_dict:4,inspir:[1,16,21],instabl:[0,11],instanc:[4,14,15],instant:[0,11],instantli:[0,11],instead:[0,4,7,11],integ:[0,5,7,11,21],integr:2,integrals_str:2,interact:[0,6,11],interfac:[4,9,11,17],interfer:[9,17],intern:[0,7,11,13],internal_buff:[0,11],internal_buffering_off:0,internal_buffering_print:0,internal_buffering_stor:0,interpol:[2,5],interpolate_in_mass_izzard2012:2,interpolator_nam:2,intershel:[0,11],interstellar:[0,11],intger:[0,11],intro:[0,11],invers:21,involv:[0,11],inward:[0,11],ipynb:15,is_capsul:4,isfil:15,isn:[4,5],isnt:15,isotop:[0,4,11,13],isotope_hash:5,isotope_list:5,item:1,iter:4,its:[0,4,5,6,9,11,15,16,17,18],itself:[4,7,9,12,14,17],iwamoto:[0,11],izzard2012_period_distribut:2,izzard:[0,9,11,17],jager:[0,11],jaschek:2,jeff:[9,17],jia:[0,11],john:[0,11],join:[11,12,14,15],jordi:[0,11],json:[4,5,7,11,14,15],jsondecod:4,jsonencod:4,jupyt:[9,17],just:[0,2,4,5,7,11,15,21],kap:[0,11],kappa:[0,11],kaps_rentrop:[0,11],karaka:[0,11],keep:[5,15],kei:[1,2,4,5,6,7,13,14,15,16],kelvin:[0,11],keplerian:[0,11],keyword:[16,18],kick:[0,7,11],kick_backward:0,kick_forward:0,kick_inward:0,kick_outward:0,kick_random:0,kick_straight_up:0,kick_velocity_custom:0,kick_velocity_fix:0,kick_velocity_maxwellian:0,kill:[1,12,15],kim:[0,11],kind:[0,11],kippenhahn:[0,11],know:[0,1,5,6,11,13,14],known:[0,2,5,11,14,15,18],kroupa2001:[2,5,15],kroupa:2,krticka:0,ktg93:2,kwarg:[5,16,18],lambda:[0,11],lambda_c:[0,11],lambda_ce_dewi_tauri:0,lambda_ce_klencki_2020:0,lambda_ce_polytrop:0,lambda_ce_wang_2016:0,lambda_enthalpi:[0,11],lambda_ionis:[0,11],lambda_min:[0,11],lambda_mult:[0,11],lambda_multipli:[0,11],lambda_v:2,lamer:[0,11],landau:[0,11],langer:[0,11],larger:[0,11],last:2,lastli:[11,14],latter:[0,11],law:2,law_const:2,lbv:[0,11],ld_library_path:[9,17],lead:[0,11,15,21],learn:12,least:[9,17],leav:[0,11],left:[0,11],legaci:[0,11],legacy_yield:[0,11],len:[14,15],lengthen:[0,11],less:[0,1,2,3,11,14],let:[5,14,15],level:[1,4],li7:[0,11],lib:[9,11,14,17],libbinary_c:7,libcustom_logging_5d7779e8190e4b79b10c7e6a44cb0e7:14,libcustom_logging_8967553693ac4e11a49c42d4eef773e8:14,libcustom_logging_e9c2bec7f15541eb847fc6013e48e7:[],libcustom_logging_eac2dfc438a14e5a9f5be98b1b6b4294:[],libgsl:[9,17],libmemo:[9,17],librari:[0,1,5,7,11,12,18],library_path:[9,17],librinterpol:[9,17],lies:[0,11],lifetim:[0,11,15],lifshitz:[0,11],like:[0,1,4,5,7,9,11,15,16,17,19],limit:[0,11,15,16],line:[1,4,5,7,9,12,14,15,16,17],linear2:7,linear:[0,2,7,11],linear_extrapolation_q:2,linearli:19,linker:1,linspac:19,linux:11,list:[0,1,2,4,7,11,14,15,18,19],list_arg:[0,11],list_of_sub_kei:2,lit:[0,11],lithium:[0,11],lithium_gb_post_1dup:[0,11],lithium_gb_post_heflash:[0,11],lithium_hbb_multipli:[0,11],lithium_t:[0,11],littleton:[0,11],liu:[0,11],llnl:[0,11],lnm1:[5,15],load:[0,1,4,5,7,11,12,14,15,16],load_logfil:4,lobe:[0,11,21],local:2,locat:[0,2,7,9,11,17],lodder:[0,11],log10:[0,2,11,15],log10m1:7,log10p:2,log10per:15,log10pmin:2,log:[0,1,2,3,4,5,7,9,11,14,16,17,18,21],log_arg:7,log_args_dir:7,log_arrow:0,log_every_timestep:[12,14],log_fil:7,log_filenam:[0,11,14,18],log_runtime_system:7,logarithm:2,logensembletim:[0,11],logfil:[4,9,14,17],logg:[0,11],logger:15,logging_dict:1,logging_lin:12,logic:[1,5,7,12],logmass:2,logp:2,logper:2,logperiod:2,long_spectral_typ:2,longer:[0,11],longnam:[5,15],look:[1,4,9,15,17],lookback:[0,11],loon:[0,11],loop:[5,14,15],loos:16,lose:[0,11],loss:[0,11,14],lost:[0,11],lot:[4,7,15,18],low:[0,2,11],low_mass_m:0,low_mass_main_sequ:0,lower:[0,2,5,11,15,19],lsoda:[0,11],lsun:[0,11,16],lugaro:[0,11],luminos:[0,11,16],luminosity_1:16,luminosity_2:16,lynnett:[0,11],m_1:[0,5,11,12,13,14,15,18],m_2:[0,11,12,14,15],m_3:[0,11],m_4:[0,11],m_max:[2,5,15],m_min:[5,15],maccretor:[0,11],machin:[7,9,17],macro:[0,4,11,13],madau:2,maeder:[0,11],magellan:[0,11],magnet:[0,11],magnetic_braking_algorithm:[0,11],magnetic_braking_algorithm_andronov_2003:0,magnetic_braking_algorithm_barnes_2010:0,magnetic_braking_algorithm_hurley_2002:0,magnetic_braking_algorithm_rappaport_1983:0,magnetic_braking_factor:[0,11],magnetic_braking_gamma:[0,11],magnitud:4,mai:[0,11],main:[0,1,7,9,11,12,15,17],main_sequ:[0,11],mainli:8,major:[0,11],make:[0,1,2,4,5,7,9,11,14,15,16,17,18],make_build_text:4,makedir:[4,15],manag:[4,9,17],mani:[0,5,7,11,13,15],manual:12,manufactur:[0,11],map:7,maria:[0,11],mass:[0,1,2,4,5,7,11,13,14,15,16,18,21],mass_1:[15,16],mass_2:[15,16],mass_accretion_for_eld:[0,11],mass_accretor:21,mass_donor:21,mass_evolut:16,mass_for_hestar_ia_low:[0,11],mass_for_hestar_ia_upp:[0,11],mass_of_pmz:[0,11],mass_str:2,massiv:[0,2,11],massless:[0,11],massless_remn:0,master:[7,16],match:[0,4,11,14,15,16],materi:[0,11],math:[5,15],matplotlib:[9,16,17],matter:[0,11],mattsson:[0,11],mattsson_mass_loss:[0,11],mattsson_orich_tpagbwind:[0,11],max:[0,2,11,12,15],max_bound:[2,19],max_evolution_tim:[0,1,11,12,14,15],max_hewd_mass:[0,11],max_model_numb:[0,11],max_multipl:2,max_neutron_star_mass:[0,11],max_queue_s:7,max_stellar_angmom_chang:[0,11],max_stellar_type_1:[0,11],max_stellar_type_2:[0,11],max_stellar_type_3:[0,11],max_stellar_type_4:[0,11],max_tim:14,max_val:2,maximum:[0,2,7,11,12,21],maximum_mass_ratio_for_instant_rlof:[0,11],maximum_mass_ratio_for_rlof:21,maximum_mcbagb_for_degenerate_carbon_ignit:[0,11],maximum_nuclear_burning_timestep:[0,11],maximum_timestep:[0,11],maximum_timestep_factor:[0,11],maxmimum:[0,11],maxwellian:[0,11],mayb:16,mayor:2,mc13_pocket_multipli:[0,11],mch:[0,11],mcmin:[0,11],mdonor:[0,11],mean:[0,2,4,5,7,9,11,17],meant:7,measur:4,medium:[0,11],mega:2,memaddr:[11,12],memori:[1,5,7,11,12,21],menv:[0,11],merg:[0,2,4,7,11],merge_dict:[4,13],merge_multipl:2,merger:[0,11],merger_angular_momentum_factor:[0,11],merger_mass_loss_fract:[0,11],mesa:[9,17],mesasdk_init:[9,17],mesasdk_root:[9,17],messag:4,mestel:[0,11],met:[5,15],metal:[0,2,11,12,14,15,21],method:[0,5,7,11,12,14,15],meynet:[0,11],might:[4,5,9,15,17],milki:[0,11],miller:[0,11],min:[2,12,15],min_bound:[2,19],min_p:2,min_per:2,min_val:2,minimal_verbos:4,minimum:[0,2,4,7,11,21],minimum_co_core_mass_for_carbon_ignit:[0,11],minimum_co_core_mass_for_neon_ignit:[0,11],minimum_donor_menv_for_comenv:[0,11],minimum_envelope_mass_for_third_dredgeup:[0,11],minimum_helium_ignition_core_mass:[0,11],minimum_mcbagb_for_nondegenerate_carbon_ignit:[0,11],minimum_orbital_period_for_instant_rlof:[0,11],minimum_period_for_rlof:21,minimum_separation_for_instant_rlof:[0,11],minimum_separation_for_rlof:21,minimum_time_between_pn:[0,11],minimum_timestep:[0,11],mint:[0,11],mint_data_cleanup:[0,11],mint_dir:[0,11],mint_disable_grid_load_warn:[0,11],mint_fallback_to_test_data:0,mint_hard_max_nshel:0,mint_hard_min_nshel:0,mint_kippenhahn:[0,11],mint_kippenhahn_companion_stellar_typ:[0,11],mint_kippenhahn_stellar_typ:[0,11],mint_maximum_nshel:0,mint_maximum_shell_mass:[0,11],mint_metal:[0,11],mint_minimum_nshel:0,mint_minimum_shell_mass:[0,11],mint_ms_rejuven:[0,11],mint_nshel:0,mint_nuclear_burn:[0,11],mint_remesh:[0,11],mint_use_zams_profil:[0,11],mira:[0,11],misc:[9,11],miscellan:[4,13],miss:[0,4,6,11],mix:[0,4,7,11],mixtur:[0,11],mmax:2,mmin:[2,7],mnra:21,model:[0,1,7,11,12,14,15],modif:3,modifi:[0,11,12],modul:[0,6,7,10,11,13,15],modulo:7,moe:[2,4,5,9,15],moe_di_stefano_2017:5,moe_di_stefano_2017_multiplicity_fract:2,moe_di_stefano_2017_pdf:2,moment:[0,11,12,15,19],momenta:[0,11,16],momentum:[0,11],mont:[0,7,11],monte_carlo_kick:[0,11],more:[0,1,3,4,5,7,9,11,12,13,14,15,16,17,19],most:[4,11],mostli:[4,6,7,15,16,18],move:[0,11],msun:[0,2,11,12,14],much:[0,4,11,15],multi:7,multipl:[0,2,4,7,11,15],multiplc:[0,11],multipli:[0,4,7,11],multiplicity_arrai:2,multiplicity_fraction_funct:7,multiplicity_model:7,multiplicity_modul:7,multiply_values_dict:[4,13],multiprocess:7,must:[0,2,11,14,15],my_stellar_data:[1,12,15],myr:[0,11,14],n100:[0,11],n100_z0:[0,11],n100h:[0,11],n100l:[0,11],n10:[0,11],n150:[0,11],n1600:[0,11],n1600c:[0,11],n200:[0,11],n20:[0,11],n300c:[0,11],n40:[0,11],naked_helium_star_giant_branch:0,naked_helium_star_hertzsprung_gap:0,naked_main_sequence_helium_star:0,name:[1,4,5,6,11,13,15,18,20],natur:[0,11],nauenberg:[0,11],nearer:[0,11],nebula:[0,11],necessari:[4,5,15],need:[0,2,5,9,11,12,14,15,17],neg:[0,4,11],neither:[0,5,11],neleman:[0,11],nelemans_gamma:[0,11],nelemans_max_frac_j_chang:[0,11],nelemans_minq:[0,11],nelemans_n_comenv:[0,11],nelemans_recalc_eccentr:[0,11],nemp:[0,11],nemp_cfe_minimum:[0,11],nemp_nfe_minimum:[0,11],nenamg:[0,11],neon:[0,11],nest:[4,5,15],network:[0,11,13],neutrn:[0,11],neutron:[0,11,15],neutron_star:0,never:[0,11],newer:[0,2,11],newli:[0,11],newopt:2,newton:[0,11],next:[4,15],nice:[1,5,16],nieuwenhuijzen:[0,11],nieuwenhuijzen_windfac:[0,11],nmax:2,no_thermohaline_mix:[0,11],noecho:[0,11],noechonow:[0,11],noel:[0,11],nolowq:7,nomin:[0,11],non:[0,7,11],nonconservative_angmom_gamma:[0,11],none:[0,1,2,4,5,6,7,11,15,21],nonetyp:15,nonzero:7,nor:[0,11],norm:7,normal:[0,4,11],normalis:[2,7],normalize_dict:2,normalize_multipl:7,notabl:15,note:[0,7,11],notebook:[9,11,12,13,14,15,17],notebook_api_funct:14,notebook_custom_log:[14,15],notebook_individual_system:[12,14,15],notebook_popul:14,noteworthi:3,noth:[5,7],notifi:18,nova:[0,11],nova_faml_multipli:[0,11],nova_irradiation_multipli:[0,11],nova_retention_algorithm_claeys2014:0,nova_retention_algorithm_const:0,nova_retention_algorithm_hillman2015:0,nova_retention_fract:[0,11],nova_retention_method:[0,11],nova_timestep_accelerator_index:[0,11],nova_timestep_accelerator_max:[0,11],nova_timestep_accelerator_num:[0,11],now:[0,2,4,11,12,14,15],nuclear:[0,11],nuclear_mass_hash:5,nuclear_mass_list:5,nucleosynthesi:[0,4,11],nucleosynthesis_sourc:[4,13],nucreacmult:[0,11],nucsyn:[9,11],nucsyn_angelou_lithium:[0,11],nucsyn_gce_outflow_check:[0,11],nucsyn_hbb:[0,11],nucsyn_metal:[0,11],nucsyn_network:[0,11],nucsyn_network_error:[0,11],nucsyn_s_process:[0,11],nucsyn_solv:[0,11],nucsyn_third_dredge_up:[0,11],nugi:[0,11],num_ansi_colour:0,number:[0,2,4,5,7,9,11,15,17],numer:4,numpi:[4,9,14,17,19],obj:4,object:[0,3,4,5,7,8,11,16],object_hook:4,object_pairs_hook:4,object_parse_funct:14,obtain:0,obvious:12,occur:[0,11,21],off:[0,11,15],off_m:14,offset:[0,11],ohio:[0,11],old:7,old_solut:[9,17],omega:[0,11],onc:[0,11],one:[0,4,5,7,11,13,15,16],onewd:0,onli:[0,4,5,7,11,12,15,21],onset:[0,11],onto:[0,2,11],opac:[0,11],opacity_algorithm:[0,11],opacity_algorithm_ferguson_op:0,opacity_algorithm_paczynski:0,opacity_algorithm_star:0,opal:[0,11],open:[14,15],opm:2,opt:[2,4,11],option:[0,1,2,4,5,9,10,11,15,17,21],orb:[5,15],orbit:[0,2,11,16,21],orbit_evolut:16,orbital_inclin:[0,11],orbital_inclinationi:[0,11],orbital_period:[0,11,12,14,15,21],orbital_period_quadrupl:[0,11],orbital_period_tripl:[0,11],orbital_phas:[0,11],orbital_phase_quadrupl:[0,11],orbital_phase_tripl:[0,11],orbiting_object:[0,11],orbiting_objects_close_pc_threshold:[0,11],orbiting_objects_log:[0,11],orbiting_objects_tides_multipli:[0,11],orbiting_objects_wind_accretion_multipli:[0,11],order:[3,4,5,15],ordereddict:4,org:[0,2,11],origin:[9,17],other:[0,1,2,4,6,7,9,11,13,14,15,16,17],otherwis:[0,5,6,7,11],out:[4,6,7,12,13],outcom:[0,11],outer:[0,11],outfil:[5,15],outfile_nam:1,outfilenam:15,output:[1,3,4,5,7,9,11,12,13,14,16,17,18,21],output_dict:14,output_dir:[5,14,15],output_fil:[4,6,14],output_filenam:[5,15],output_lin:4,outsid:[0,2,11],outward:[0,11],over:[4,5,13,14,15],overflow:[0,11],overlap:4,overrid:2,overriden:15,overshoot:[0,11],overspin_algorithm:[0,11],overspin_bs:[0,11],overspin_massloss:[0,11],overview:11,own:[5,7,9,12,14,15,17],oxygen:[0,11],oxygen_neon_white_dwarf:0,packag:[4,9,11,15,17,19],paczynski:[0,11],page:[0,9,11,15,17],pair:[0,4,11],panda:[4,9,14,16,17],pane:16,panel:[0,11],paper:[0,11],param_nam:4,paramet:[1,2,3,4,5,6,7,9,11,12,14,15,16,18,19,21],parameter_nam:[4,5,11,13,15],parameter_value_input_typ:[4,13],pars:[3,4,5,14,15,16,18],parse_binary_c_version_info:4,parse_cmdlin:5,parse_const:4,parse_float:4,parse_funct:[5,7,14,15,18],parse_function_hr_diagram:16,parse_function_mass:16,parse_function_orbit:16,parse_int:4,parsec:2,part:[2,5,11,14,15,21],partial:[0,11],particularli:[0,11],pasp:2,pass:[5,7,9,11,12,14,15,16,17,18],path:[4,7,9,14,15,17],patho:[9,17],pdf:[0,2,9,11,17],pend:[0,11],per:[0,4,5,7,11,14,15,21],percentag:[0,11],peret:[0,11],perform:[0,11],perhap:[0,11],periastron:[0,11],pericent:21,period:[0,2,11,12,14,15,16,21],period_str:2,perl:[1,15],persist:11,persistent_data:11,pgo:[0,11],phase:[0,11],phasevol:[0,11,15],phdi:[0,11],photoevapor:[0,11],php:2,physic:15,pick:16,piec:[5,15],pinnsonneault:[0,11],pisn:[0,11],pkg:[9,17],place:[0,11],placehold:16,plai:[0,11],plan:7,planetari:[0,11],plaw2:7,pleas:[0,4,11,15],plot:[0,11,14,16],plot_funct:[9,10],plot_hr_diagram:16,plot_hr_diagram_singl:16,plot_mass:16,plot_orbit:16,plot_system:16,plot_typ:16,pls:5,plu:[0,11],pms:16,pms_mass_1:16,pms_mass_2:16,pn_comenv_transition_tim:[0,11],pn_fast_wind:[0,11],pn_fast_wind_dm_agb:[0,11],pn_fast_wind_dm_gb:[0,11],pn_fast_wind_mdot_agb:[0,11],pn_fast_wind_mdot_gb:[0,11],pn_hall_fading_time_algorithm:[0,11],pn_hall_fading_time_algorithm_maximum:[0,11],pn_hall_fading_time_algorithm_minimum:[0,11],pn_resolv:[0,11],pn_resolve_maximum_envelope_mass:[0,11],pn_resolve_minimum_effective_temperatur:[0,11],pn_resolve_minimum_luminos:[0,11],pne:[0,11],pogg:[0,11],point:[0,2,4,5,9,11,17],poisson:[2,7],pol:[0,11],polytrop:[0,11],pop:12,pop_macro:12,popul:[0,2,3,5,6,8,9,11,17,19],population_id:7,population_nam:15,population_set:5,posit:[0,2,11],possibl:[0,1,2,4,6,9,11,14,17],post:[0,11,12],post_ce_adaptive_menv:[0,11],post_ce_envelope_dm_eagb:[0,11],post_ce_envelope_dm_gb:[0,11],post_ce_envelope_dm_tpagb:[0,11],post_ce_objects_have_envelop:[0,11],post_sn_orbit_bs:0,post_sn_orbit_method:[0,11],post_sn_orbit_tt98:0,postagb_legacy_log:[0,11],postagb_wind_gi:0,postagb_wind_krticka2020:0,postagb_wind_non:0,postagb_wind_use_gi:0,postagbwind:0,potenti:[0,11],power:[0,2,11],powerlaw:2,powerlaw_const:2,powerlaw_extrapolation_q:2,ppisn:[0,11],ppisn_farmer19:0,ppisn_non:0,ppisn_prescript:[0,11],ppn_envelope_mass:[0,11],pragma:12,pre:[0,11,16],pre_events_stardata:[0,11,12],pre_main_sequ:[0,11],pre_main_sequence_fit_lob:[0,11],precis:4,precod:[5,15],predefin:[2,15],predict:7,predictor:[0,11],prefer:[0,5,11],prefix:[0,11],prepar:2,prepare_dict:2,prescrib:0,prescript:[0,11,15],prescrit:[0,11],present:[2,4,5,15],preserv:[0,11],preset:16,pressur:[0,11],prev_stellar_type_1:15,prev_stellar_type_2:15,prevent:[0,7,11],previou:4,previous:[14,15],previous_stardata:[1,12,14,15],primari:[1,2,5,15,21],pringl:0,print:[4,6,7,11,12,13,14,15],print_help:[4,13],print_info:6,print_option_descript:6,print_structur:4,printf:[1,12,14,15],prior:[0,11],privat:[5,6,9],prob_dict:2,probability_weighted_mass:7,probabl:[0,1,2,5,6,7,11,12,15,16],probdist:[5,15],problem:[0,11],process:[0,4,5,7,11,15],profil:[0,11],progenitor:[0,11,15],program:[9,17],project:[0,11],proper:[6,12],properli:[0,11],properti:[0,4,7,16],prot1:[0,11],prot2:[0,11],prot3:[0,11],prot4:[0,11],provid:[0,2,5,7,11,15,18],pseudorandom:[0,11],publicli:12,puls:[0,11,21],pulsat:[0,11],pump:[0,11],purpos:[7,15,16],push_macro:12,put:[1,4,5,7,15,16],py_rinterpol:[9,17],pyenv:[9,11,17],pysiz:4,pytest:[9,17],python3:[9,11,17],python:[4,11,12,15],q_high_extrapolation_method:7,q_interpol:2,q_low_extrapolation_method:7,qcrit_bh:[0,11],qcrit_bs:0,qcrit_cheb:[0,11],qcrit_chen_han_formula:0,qcrit_chen_han_t:0,qcrit_cowd:[0,11],qcrit_degenerate_bh:[0,11],qcrit_degenerate_cheb:[0,11],qcrit_degenerate_cowd:[0,11],qcrit_degenerate_eagb:[0,11],qcrit_degenerate_gb:[0,11],qcrit_degenerate_hegb:[0,11],qcrit_degenerate_hehg:[0,11],qcrit_degenerate_hem:[0,11],qcrit_degenerate_hewd:[0,11],qcrit_degenerate_hg:[0,11],qcrit_degenerate_lmm:[0,11],qcrit_degenerate_m:[0,11],qcrit_degenerate_n:[0,11],qcrit_degenerate_onewd:[0,11],qcrit_degenerate_tpagb:[0,11],qcrit_eagb:[0,11],qcrit_gb:[0,11],qcrit_gb_bs:0,qcrit_gb_chen_han_formula:0,qcrit_gb_chen_han_t:0,qcrit_gb_ge2015:0,qcrit_gb_hjellming_webbink:0,qcrit_gb_q_no_comenv:0,qcrit_gb_temmink2021:0,qcrit_gb_vos2018:0,qcrit_ge2015:0,qcrit_hegb:[0,11],qcrit_hehg:[0,11],qcrit_hem:[0,11],qcrit_hewd:[0,11],qcrit_hg:[0,11],qcrit_hjellming_webbink:0,qcrit_lmm:[0,11],qcrit_m:[0,11],qcrit_n:[0,11],qcrit_onewd:[0,11],qcrit_q_no_comenv:0,qcrit_temmink2021:0,qcrit_tpagb:[0,11],qcrit_vos2018:0,qcrits_:[0,11],qcrits_degenerate_:[0,11],qdata:2,qlimit:2,quad:7,quadrat:[0,11],quadrulpl:[0,11],quadrupl:[0,2,7,11],quantiti:16,queri:14,queue:7,quickli:14,quit:[0,4,11],r_l:21,radau:0,radi:[0,11],radiat:[0,11],radii:[0,11,21],radiu:[0,1,11,12,15,16,21],radius_1:16,radius_2:16,ragb:21,raghavan2010_binary_fract:2,raghavan:2,rai:[0,11],railton:[0,11],rais:[0,4,7,11,15],ram:[0,11],ran:7,random:[0,7,11],random_count:14,random_se:[0,11,14],random_skip:[0,11],random_system:[0,11],random_systems_se:[0,11],rang:[0,2,5,7,11,14,15,19],rapid:0,rapidli:[0,11],rappaport:[0,11],rate:[0,2,11],rather:[0,4,5,7,9,11,12,14,15,17],ratio:[0,2,11,15,21],raw:[4,5,7,11,16,18],raw_output:4,reach:[0,11],reaction:[0,11],read:[3,4,14,15],real:[5,15],realli:[0,5,6,7,11,15],reason:[0,11],rebuild:[0,9,11,17],rebuilt:[9,17],recalcul:[0,11],receiv:4,recogn:15,recombin:[0,11],recommend:[1,3,5],recompil:[9,15,17],recurs:[4,5],recursive_change_key_to_float:4,recursive_change_key_to_str:4,red:[0,11],redhat:1,redshift:2,reduc:[0,11],reduct:7,regardless:16,region:[0,11],regist:15,reignit:[0,11],reimer:[0,11],reinstal:[9,17],reject:[0,11],rejects_in_log:[0,11],rejuven:[0,11],rel:[0,11],relat:[0,11],releas:[4,9,17],reliabl:11,remain:[0,11],remesh:[0,11],remnant:[0,11],remov:[0,4,5,11,14,15],remove_fil:4,renormalis:2,rentrop:[0,11],repeat:[0,7,11],repo:[9,17],report:[0,11,15],repositori:3,repres:7,represent:[4,5,15],reproduc:[0,11],requir:[0,2,4,11,14,15,16,18],reset:[0,11],reset_pref:[0,11],reset_star:[0,11],reset_stars_default:[0,11],resolut:[0,5,7,11,15],resolv:[0,11],reson:[0,11],respect:[0,2,11],rest:[2,5,15],restructuredtext:4,result:[0,1,2,4,5,7,9,11,14,15,17],result_arrai:2,result_dict:2,retain:[0,11],rethink:4,return_all_info:5,return_arglin:11,return_binary_c_default:5,return_binary_c_version_info:[4,5,13],return_compilation_dict:1,return_help:11,return_help_al:[4,11],return_maximum_mass_ratio_for_rlof:[11,21],return_minimum_orbit_for_rlof:[11,21],return_persistent_data_memaddr:11,return_population_set:5,return_store_memaddr:11,return_version_info:[4,11],revap_in:[0,11],revap_out:[0,11],revers:[0,11,16],reverse_tim:[0,11],revis:[0,4],rewrit:5,rhagavan:7,ri0005:15,rich:[0,11],riello:[0,11],rin:[0,11],ring:[0,11],risk:[5,15],ritter:[0,11],rk2:[0,11],rk4:[0,11],rlof:[0,11,21],rlof_angular_momentum_transfer_model:[0,11],rlof_angular_momentum_transfer_model_bs:0,rlof_angular_momentum_transfer_model_conserv:0,rlof_eccentric_as_circular:[0,11],rlof_entry_threshold:[0,11],rlof_f:[0,11],rlof_interpolation_binary_c:0,rlof_interpolation_bs:0,rlof_interpolation_method:[0,11],rlof_mdot_factor:[0,11],rlof_mdot_modul:[0,11],rlof_method:[0,11],rlof_method_adapt:0,rlof_method_adaptive2:0,rlof_method_bs:0,rlof_method_claei:0,rlof_method_ritt:0,rlof_nonconservative_gamma_donor:0,rlof_nonconservative_gamma_isotrop:0,rlof_radiation_correct:[0,11],rlof_transition_objects_escap:[0,11],rob:[0,2,11,21],robert:[9,17],roch:[0,11,21],roche_lob:21,rochelob:21,rol1:14,rol2:14,room:[5,15],root:[9,17],rotat:[0,2,11],rotation:[0,11],rotationally_enhanced_expon:[0,11],rotationally_enhanced_mass_loss:[0,11],rotationally_enhanced_massloss:[0,11],rotationally_enhanced_massloss_angmom:0,rotationally_enhanced_massloss_langer_formula:[0,11],rotationally_enhanced_massloss_langer_formula_and_angmom:0,rotationally_enhanced_massloss_non:0,rout:[0,11],routin:[0,3,5,9,11,16],row:[14,16],rring:[0,11],rssd:2,rst:[4,6],rsun:16,rubric:5,run:[0,1,3,4,5,7,9,11,17,18],run_popul:11,run_system:[11,12,13,14,16,18],run_system_wrapp:[9,10,12,14],run_wrapp:3,run_zero_probability_system:7,runtim:[1,7],russel:[0,11],rzam:21,s_option:7,safe:15,sai:[0,11],said:[0,11],same:[0,4,7,9,11,14,17],sampl:[0,2,5,11,15,19],sample_valu:2,sampler:9,sana12:[2,15],sana:2,save:[0,1,2,11,12,15],save_pre_events_stardata:[0,11],scalo:2,scanf:0,scheme:[0,11],schneider:[0,11],schroeder:[0,11],script:[3,9,12,17],sdb:[0,11],sdist:[9,17],sdo:[0,11],search:9,second:[0,2,4,11,16],secondari:[2,21],section:[2,4,8,9,11,15,17],see:[0,5,9,11,12,13,14,15,16,17],seed:[0,11],seem:[9,16,17],seen:4,segment:19,seitenzahl2013_model:[0,11],seitenzahl:[0,11],select:[0,4,11,14],selected_head:4,selector:[0,11],self:[5,7,14,15],semi:[0,11],sent:[0,11],sentenc:1,sep:[2,5,14,15,21],sep_max:15,sep_min:15,separ:[0,2,4,5,6,11,12,14,15,16,21],separation_quadrupl:[0,11],separation_tripl:[0,11],separta:[0,11],seper:15,sequenc:[0,11,12],seri:[0,11],serialis:[4,5],serv:4,server:5,set:[0,1,2,3,4,5,6,7,9,12,13,14,16,17],set_moe_di_stefano_set:5,set_opt:2,setup:[9,15,17,18],sever:[6,7,13,15,16,18],sfh:2,shara:[0,11],share:[1,7,14,18],shared_lib_filenam:12,shell:[0,11],shellular:0,shorten:[0,11],should:[0,1,2,5,6,7,9,11,14,15,16,17,18],shouldn:[0,4,11],show:[0,3,7,11,14,15,16],show_plot:16,show_stellar_typ:16,shown:[0,11,16],shrinkagb:14,side:15,siess:[0,11],sigma:2,silent:4,sill:[0,11],simplest:14,simpli:[0,11],simul:[0,1,11,12,15],simulation_:5,sinc:[4,16],singl:[0,2,3,5,7,11,15,16],single_star_lifetim:[11,12,14],sit:[0,11],site:11,situat:11,size:[4,7],skip:[0,4,7,9,11,17],skipkei:4,slightli:11,slope:2,slow:[0,11],slower:[0,11],slurm:[5,7,8],slurm_grid:5,small:[0,11],small_envelope_method:[0,11],small_envelope_method_bs:0,small_envelope_method_miller_bertolami:0,smaller:[0,11],sn_impulse_liu2015:0,sn_impulse_non:0,sn_impulse_wheeler1975:0,sn_kick_companion_a:[0,11],sn_kick_companion_aic_bh:[0,11],sn_kick_companion_bh_bh:[0,11],sn_kick_companion_bh_n:[0,11],sn_kick_companion_ecap:[0,11],sn_kick_companion_grb_collapsar:[0,11],sn_kick_companion_hestaria:[0,11],sn_kick_companion_ia_chand:[0,11],sn_kick_companion_ia_chand_co:[0,11],sn_kick_companion_ia_eld:[0,11],sn_kick_companion_ia_h:[0,11],sn_kick_companion_ia_he_co:[0,11],sn_kick_companion_ia_hybrid_hecowd:[0,11],sn_kick_companion_ia_hybrid_hecowd_sublumin:[0,11],sn_kick_companion_ibc:[0,11],sn_kick_companion_ii:[0,11],sn_kick_companion_iia:[0,11],sn_kick_companion_ns_n:[0,11],sn_kick_companion_phdi:[0,11],sn_kick_companion_pisn:[0,11],sn_kick_companion_ppisn:[0,11],sn_kick_companion_tz:[0,11],sn_kick_companion_wdkick:[0,11],sn_kick_dispersion_aic_bh:[0,11],sn_kick_dispersion_bh_bh:[0,11],sn_kick_dispersion_bh_n:[0,11],sn_kick_dispersion_ecap:[0,11],sn_kick_dispersion_grb_collapsar:[0,11],sn_kick_dispersion_ia_hybrid_hecowd:[0,11],sn_kick_dispersion_ia_hybrid_hecowd_sublumin:[0,11],sn_kick_dispersion_ibc:[0,11],sn_kick_dispersion_ii:[0,11],sn_kick_dispersion_ns_n:[0,11],sn_kick_dispersion_phdi:[0,11],sn_kick_dispersion_pisn:[0,11],sn_kick_dispersion_ppisn:[0,11],sn_kick_dispersion_tz:[0,11],sn_kick_distribution_aic_bh:[0,11],sn_kick_distribution_bh_bh:[0,11],sn_kick_distribution_bh_n:[0,11],sn_kick_distribution_ecap:[0,11],sn_kick_distribution_grb_collapsar:[0,11],sn_kick_distribution_ia_hybrid_hecowd:[0,11],sn_kick_distribution_ia_hybrid_hecowd_sublumin:[0,11],sn_kick_distribution_ibc:[0,11],sn_kick_distribution_ii:[0,11],sn_kick_distribution_ns_n:[0,11],sn_kick_distribution_phdi:[0,11],sn_kick_distribution_pisn:[0,11],sn_kick_distribution_ppisn:[0,11],sn_kick_distribution_tz:[0,11],sn_none:12,sn_type:12,sneia:[0,11],snia:[0,11],snippet:[11,14],solar:[0,2,11,13,21],solver:[0,11],solver_forward_eul:0,solver_predictor_corrector:0,solver_rk2:0,solver_rk4:0,some:[0,1,2,5,7,9,11,12,13,14,15,16,17],someth:[0,5,11,14],sometim:13,somewhat:15,soon:19,sort:4,sort_kei:4,sourc:[1,2,4,5,6,7,10,16,18,19,21],source_file_filenam:7,source_list:5,sourcecod:[9,11,12,17],sourcefile_nam:1,space:[0,5,11,15,19],spacing_funct:[9,10],spacingfunc:[5,15],spacingfunct:[5,15],special:[0,11,15],specif:[0,4,11,13,14,16],specifi:[0,7,11],spectral:2,speed:[0,7,11],speedtest:[0,11],spent:4,spera:0,spheric:[0,11],spin:[0,11],spinrat:[0,11],split:[0,7,11,14,15],split_lin:14,splitlin:[11,12,14,15],splitpoint:[0,11],spread:5,sqrt:[0,11],src:[0,9,11,12,17],stabil:[0,11],stabl:[0,11],stancliff:[0,11],standard:[0,2,11],star:[1,2,7,9,11,12,13,14,15,16,21],star_with_no_mass:0,starcount:15,stardata:[0,1,11,12,14,15],stardata_dump_filenam:[0,11],stardata_load_filenam:[0,11],stardata_t:12,start:[0,1,4,5,6,7,11,14,15],start_tim:[0,11],start_timestamp:15,startrack:0,startswith:14,state:[0,11],statement:[1,12,14,15],statist:[0,11],statu:[0,1,11,15],stderr:[0,11],stdout:4,steadi:[0,11],stefan:16,stefano:[4,5,9,15],stellar:[0,2,7,11,16,20],stellar_structure_algorithm:[0,11],stellar_structure_algorithm_external_funct:0,stellar_structure_algorithm_mint:0,stellar_structure_algorithm_modified_bs:0,stellar_structure_algorithm_non:0,stellar_typ:[1,9,10,12,14,15,16],stellar_type_1:[0,11,15,16],stellar_type_2:[0,11,15,16],stellar_type_3:[0,11],stellar_type_4:[0,11],stellar_type_dict:20,stellar_type_dict_short:20,step:[4,5,12,14,15,16,19],stepsiz:[5,15],stick:7,stiff:[0,11],still:[1,7,12],stop:[0,4,11],stopfil:[0,11],storag:[0,11],store:[0,2,3,4,5,7,9,14,15,17,21],store_capsul:11,store_memaddr:[11,21],str:[1,4,5,6,15,16],straight:5,straightforward:15,straniero:[0,11],strength:[0,11],strict:4,string:[0,1,3,4,5,6,7,11,13,14,15,16,18],strip:[0,11,14],stronger:[0,11],struct:[0,11,12],structur:[0,4,7,11,16],stuff:[4,7,14,15,16],style:[0,11],sub:[0,4,11],subdict:4,subject:[0,11],sublumin:[0,11],submit:9,subroutin:8,subsequ:[0,11],subtract:4,subtract_dict:4,succe:[0,11],suggest:[0,9,11,17],suit:[9,17],sum:[0,11],sundial:[0,11],supercrit:[0,11],supernova:[0,7,11],superwind:[0,11],superwind_mira_switchon:[0,11],sure:[2,5,7,9,14,15,16,17,18],surfac:[0,11],surrei:15,surviv:[0,11],survivor:[0,11],switcher:[0,11],symmetr:[0,11],synchron:[0,11],synonym:[0,11],synthesi:[7,9,15,17],system:[0,3,4,5,7,9,11,12,15,16,17,18],system_gener:[5,15],tabl:[0,2,11],take:[0,2,4,5,7,11,15,18],taken:[0,4,11,12],tar:[9,17],target:[1,6],task:[0,2,4,5,6,8,11,15,16,18,19,21],tauri:[0,11],tbse:[0,11],technic:[12,15],teff:[0,2,11],teff_1:16,teff_2:16,teff_postagb_max:0,teff_postagb_min:0,tell:4,temp_dir:[4,14,15],temperatur:[0,2,11,16],termin:[1,9,12,15,17],test:[0,4,5,7,9,11,14,15,17,21],test_data:0,test_func:11,test_logfil:14,test_pop:15,text:[4,6],than:[0,2,4,7,9,11,15,17],thats:15,thei:[0,2,4,5,7,11,15,16],thelog:[0,11],them:[2,4,5,11,15],themselv:[2,4],thermal:[0,2,11,21],thermally_pulsing_asymptotic_giant_branch:0,thermohalin:[0,11],thesi:[0,11],thi:[0,1,2,4,5,6,7,9,10,11,12,13,14,15,16,17,18,19,21],thick:[0,11],thick_disc_end_ag:[0,11],thick_disc_logg_max:[0,11],thick_disc_logg_min:[0,11],thick_disc_start_ag:[0,11],thin:[0,11],thing:[0,2,4,5,6,11,15,18],think:[0,4,5,11],third:[0,2,11],third_dup:[0,11],third_dup_multipli:[0,11],thorn:[0,11],those:[4,5,9,15,17],thread:7,thread_id:7,three:[0,2,11,15],three_part_powerlaw:[2,15],threshold:[0,4,7,11],through:[5,11,14,15,16,18],throughout:[5,15],tidal:[0,11],tidal_strength_factor:[0,11],tide:[0,11],tides_convective_damp:[0,11],tides_hurley2002:[0,11],tides_zahn1989:[0,11],time:[0,1,2,4,5,7,9,11,12,14,15,16,17],timescal:[0,11],timestamp:7,timestep:[0,11,12,14],timestep_limit:[0,11],timestep_log:[0,11],timestep_modul:[0,11],timestep_multipli:[0,11],timestep_solver_factor:[0,11],tinslei:2,titl:6,tmp:[0,4,9,11,14,15,17],tmp_dir:[5,7,14,15],tmp_tabl:2,todo:[0,1,2,4,5,6,7,11,13,15,16,18,19,21],toler:[0,11],too:[0,4,7,9,11,17,18],took:15,top:15,topic:[0,11],torqu:[0,11],total:[0,2,4,5,7,11,15,16],total_count:15,total_mass_run:15,total_prob:15,total_probability_weighted_mass_run:15,tout:[0,11,21],tout_pringle_1992_multipli:0,tpagb:[0,11],tpagb_reimers_eta:[0,11],tpagb_wind_beasor_etal_2020:0,tpagb_wind_bloeck:0,tpagb_wind_goldman_etal_2017:0,tpagb_wind_mattsson:0,tpagb_wind_reim:0,tpagb_wind_rob_cwind:0,tpagb_wind_van_loon:0,tpagb_wind_vw93_karaka:0,tpagb_wind_vw93_karakas_carbon_star:0,tpagb_wind_vw93_orig:0,tpagb_wind_vw93_orig_carbon_star:0,tpagbwind:[0,11],tpagbwindfac:[0,11],traceback:4,track:[7,16],trade:[0,11],transfer:[0,11],transform:[0,4,11],transit:[0,11],treat:[0,11],trigger:[0,11],trio:15,tripl:[0,2,7,11],truli:[0,11],tupl:1,turn:[0,4,11,14,15],two:[0,4,11,12,20,21],txt:[5,14,15,18],type:[0,1,2,4,5,6,7,11,14,15,16,19,20,21],type_chng:14,type_ia_mch_supernova_algorithm:[0,11],type_ia_sub_mch_supernova_algorithm:[0,11],typic:[0,11],ubvri:[0,11],ugriv:[0,11],unavail:0,uncom:[5,14,15],undef:12,under:[14,19],undergo:[0,11],understand:5,undescrib:6,uniform:2,union:[2,4,5,15,19,21],uniqu:[4,5,7,15],unit:[0,11,13,21],univari:[0,11],unknown:18,unless:[1,5,7],unload:5,unpars:11,unrecogn:[9,17],unsign:0,unstabl:[0,11],until:[0,2,4,11],unus:[0,7,11],unweight:15,updat:[2,4,5,9,15,17],update_dict:[4,13],upper:[0,2,11,19],usag:[0,3],use:[0,2,4,5,7,8,9,11,12,13,14,15,16,17,18],use_astropy_valu:16,use_datadir:[5,15],use_fixed_timestep_:[0,11],use_periastron_roche_radiu:[0,11],use_tabular_intershell_abundances_karakas_2012:[0,11],used:[0,1,2,4,5,7,11,12,13,14,15,16],useful:[0,4,5,7,9,11,13,14,15,17,18,21],useful_func:[9,10],user:[1,2,4,5,6,7,12,18],uses:[0,7,11,12,15],using:[0,1,5,9,12,13,14,17],usual:[0,2,7,11,15],util:[1,2,4,5,6,11,12,13,14,15,16,18,19,21],val:2,valid:[0,2,4,11,12],valu:[0,1,2,4,5,6,7,11,13,14,15,16],value_lin:14,valueerror:15,valuerang:[5,15],values_arrai:14,van:[0,11],vandenheuvel_log:[0,11],vari:[0,11,15],variabl:[0,3,4,5,7,11],variant:[0,11],variou:[0,11],vassiliadi:[0,11],veloc:[0,2,11],verbos:[1,2,4,7,9,14,15,17],verbose_print:4,veri:[0,5,11,12,14,15,19],versa:21,version:[0,4,5,9,11,13,15,17],version_info:4,version_info_dict:13,version_info_str:4,version_onli:[0,11],via:[3,5,7,11,12,15,16],vice:21,vink:[0,11],virtual:[9,17],virtualenviron:[9,17],viscos:[0,11],viscou:[0,11],visibl:12,visit:9,volum:[0,11],vrot1:[0,11],vrot2:[0,11],vrot3:[0,11],vrot4:[0,11],vrot_breakup:0,vrot_bs:0,vrot_non_rot:0,vrot_sync:0,vw93:[0,11],vw93_eagb_wind_spe:[0,11],vw93_mira_shift:[0,11],vw93_multipli:[0,11],vw93_tpagb_wind_spe:[0,11],vwind:[0,11],vwind_beta:[0,11],vwind_multipli:[0,11],wai:[0,4,5,7,11,14,16],wang:[0,11],want:[0,2,4,5,6,7,11,12,13,15,16],warmup_cpu:[0,11],warn:[0,11,14,15],wave:[0,11,15],wd_accretion_rate_new_giant_envelope_lower_limit_helium_donor:[0,11],wd_accretion_rate_new_giant_envelope_lower_limit_hydrogen_donor:[0,11],wd_accretion_rate_new_giant_envelope_lower_limit_other_donor:[0,11],wd_accretion_rate_novae_upper_limit_helium_donor:[0,11],wd_accretion_rate_novae_upper_limit_hydrogen_donor:[0,11],wd_accretion_rate_novae_upper_limit_other_donor:[0,11],wd_kick:[0,11],wd_kick_at_every_puls:0,wd_kick_at_given_puls:0,wd_kick_direct:[0,11],wd_kick_end_agb:0,wd_kick_first_rlof:0,wd_kick_pulse_numb:[0,11],wd_kick_when:[0,11],wd_sigma:[0,11],wdwd_merger_algorithm:[0,11],wdwd_merger_algorithm_bs:0,wdwd_merger_algorithm_chen2016:0,wdwd_merger_algorithm_perets2019:0,weight:[0,7,11],well:[0,4,7,9,11,12,14,17],were:[4,15],what:[0,1,2,4,5,6,7,9,11,12,14,15,17,18],whatev:[0,5,9,12,17],wheeler:[0,11],when:[0,1,2,4,5,6,7,9,11,13,14,15,17,18],whenev:[9,17],where:[0,1,2,4,5,6,7,9,11,15,17],whether:[0,2,4,5,6,7,11,13,15,16,21],which:[0,1,2,4,5,6,7,9,11,12,13,14,15,17,18,21],whichev:7,white:[0,11],white_dwarf_cooling_carrasco2014:[0,11],white_dwarf_cooling_mestel:[0,11],white_dwarf_cooling_mestel_modifi:[0,11],white_dwarf_cooling_model:[0,11],white_dwarf_radius_carrasco2014:[0,11],white_dwarf_radius_model:[0,11],white_dwarf_radius_mu:[0,11],white_dwarf_radius_nauenberg1972:[0,11],whole:[5,7,12],width:[0,11],wind:[0,11],wind_algorithm_binary_c_2020:0,wind_algorithm_hurley2002:0,wind_algorithm_non:0,wind_algorithm_schneider2018:0,wind_angmom_loss_bs:0,wind_angmom_loss_lw:0,wind_angmom_loss_lw_hybrid:0,wind_angmom_loss_spherically_symmetr:0,wind_angular_momentum_loss:[0,11],wind_disc_angmom_fract:[0,11],wind_disc_mass_fract:[0,11],wind_djorb_fac:[0,11],wind_gas_to_dust_ratio:[0,11],wind_lbv_luminosity_lower_limit:[0,11],wind_mass_loss:[0,11],wind_multiplier_:[0,11],wind_nieuwenhuijzen_luminosity_lower_limit:[0,11],wind_type_multiplier_:[0,11],within:[0,4,5,9,11,12,13,15,17],without:[2,5,7,12,14],won:[0,11,14],wood:[0,11],work:[0,4,9,11,12,14,16,17],would:[0,4,11,15,16],wouldn:[5,15],wr_wind:[0,11],wr_wind_bs:0,wr_wind_eldridg:0,wr_wind_fac:[0,11],wr_wind_maeder_meynet:0,wr_wind_nugis_lam:0,wrap:[1,12],wrapper:[4,11,12,14,21],write:[1,4,5,6,7,11,12,14,15,18],write_binary_c_calls_to_fil:[5,15],write_binary_c_parameter_descriptions_to_rst_fil:4,write_grid_options_to_rst_fil:6,write_logfil:11,written:[5,6,7,11,14,15,18],written_data:14,wrlof_mass_transf:[0,11],wrlof_method:[0,11],wrlof_non:0,wrlof_q_depend:0,wrlof_quadrat:0,wrong:[9,17],wrwindfac:[0,11],wtts2:[0,11],wtts_log:[0,11],www:[0,2,11],x86_64:11,year:[0,2,11],yet:[0,4,7,11,16],yield:[0,11],you:[0,1,4,5,6,7,9,11,12,14,15,16,17,21],young:[0,11],your:[7,9,12,14,17],yourself:[15,16],zahn:[0,11],zam:[0,2,11,18,21],zams_collis:21,zams_mass:15,zams_mass_1:15,zams_mass_2:15,zero:[0,1,7,11],zero_ag:[12,14,15],zero_prob_stars_skip:15,zone:[0,11],zoom:[0,11],zoomfac_multiplier_decreas:[0,11],zoomfac_multiplier_increas:[0,11],zsolar:2,zytkow:[0,11]},titles:["Binary_c parameters","custom_logging_functions module","distribution_functions module","Example notebooks","functions module","grid_class module","Grid options and descriptions","Population grid code options","hpc_functions module","Welcome to binary_c-python\u2019s documentation!","Binarycpython code","Using the API functionality of binarycpython","Using custom logging routines with binarycpython","Extra features and functionality of binarycpython","Running individual systems with binarycpython","Running populations with binarycpython","plot_functions module","Python module for binary_c","run_system_wrapper module","spacing_functions module","stellar_types module","useful_funcs module"],titleterms:{"function":[4,11,13,14,15],"public":7,Adding:15,Using:[11,12],about:13,after:[9,17],algorithm:0,api:[11,12,14],binari:0,binary_c:[0,9,11,13,17],binarycpython:[10,11,12,13,14,15],build:[9,13,17],code:[7,10],compact:12,custom:12,custom_logging_funct:1,descript:6,dictionari:13,directli:12,distribution_funct:2,document:[9,17],environ:[9,17],evolut:12,evolv:15,exampl:[3,9,11,12,13,15,17],extra:13,faq:[9,17],featur:13,free:11,from:[9,11,12,17],full:15,get:[11,13],grid:[6,7,15],grid_class:5,handl:15,help:13,hpc_function:8,indic:9,individu:14,inform:[11,13],input:0,instal:[9,17],instruct:[9,17],issu:[9,17],log:[12,15],mass:12,misc:0,modif:13,modul:[1,2,4,5,8,9,16,17,18,19,20,21],moe:7,note:[9,17],notebook:3,noteworthi:15,nucsyn:0,object:[12,14,15],option:[6,7],output:[0,15],paramet:[0,13],pars:13,pip:[9,17],plot_funct:16,popul:[7,12,14,15],privat:7,python:[9,17],requir:[9,17],routin:12,run:[12,14,15],run_system_wrapp:18,run_wrapp:14,sampler:7,script:15,section:0,set:[11,15],singl:14,sourc:[9,17],spacing_funct:19,star:0,stefano:7,stellar_typ:20,store:11,string:12,supernova:12,system:14,tabl:9,usag:[9,11,12,17],useful_func:21,using:11,variabl:[9,15,17],via:[9,14,17],welcom:9,when:12}})
\ No newline at end of file
diff --git a/docs/build/html/spacing_functions.html b/docs/build/html/spacing_functions.html
index 7135c33d026a83d1fa034adb5a9ac1e25bcbfc73..f9d19b5a8e9e69d49402301f9a341bad1e041ea8 100644
--- a/docs/build/html/spacing_functions.html
+++ b/docs/build/html/spacing_functions.html
@@ -221,7 +221,7 @@
<dd class="field-even"><p><code class="xref py py-class docutils literal notranslate"><span class="pre">list</span></code></p>
</dd>
<dt class="field-odd">Returns</dt>
-<dd class="field-odd"><p>np.linspace(min_bound, max_bound, steps)</p>
+<dd class="field-odd"><p>np.linspace(min_bound, max_bound, steps+1)</p>
</dd>
</dl>
</dd></dl>
@@ -262,9 +262,9 @@
provided by <a href="https://readthedocs.org">Read the Docs</a>.
<br><br>
-Generated on binarycpython git branch: development_version/2.1.7 git revision b3e29831acaa0f53ec69dc9f97f9d49b48d0c6c9 url: <a href="https://gitlab.eps.surrey.ac.uk/ri0005/binary_c-python/-/tree/development_version/2.1.7">git url</a>.
+Generated on binarycpython git branch: master git revision cac51a6dc71daeeb943b70d5598350ab43901299 url: <a href="https://gitlab.eps.surrey.ac.uk/ri0005/binary_c-python/-/tree/master">git url</a>.
<br><br>
-Using binary_c with bit branch branch_david: git revision: "6101:20210807:c5232be5c" url: <a href="https://gitlab.eps.surrey.ac.uk/ri0005/binary_c/-/tree/branch_david">git url</a>.
+Using binary_c with bit branch branch_david: git revision: "6162:20210825:093caf0e9" url: <a href="https://gitlab.eps.surrey.ac.uk/ri0005/binary_c/-/tree/branch_david">git url</a>.
diff --git a/docs/build/html/stellar_types.html b/docs/build/html/stellar_types.html
index 08e2cbbc5c2758e10a2bf4ae4303779e253e5b3d..c10033199ab225def092f818d74765b9e9a952e7 100644
--- a/docs/build/html/stellar_types.html
+++ b/docs/build/html/stellar_types.html
@@ -243,9 +243,9 @@
provided by <a href="https://readthedocs.org">Read the Docs</a>.
<br><br>
-Generated on binarycpython git branch: development_version/2.1.7 git revision b3e29831acaa0f53ec69dc9f97f9d49b48d0c6c9 url: <a href="https://gitlab.eps.surrey.ac.uk/ri0005/binary_c-python/-/tree/development_version/2.1.7">git url</a>.
+Generated on binarycpython git branch: master git revision cac51a6dc71daeeb943b70d5598350ab43901299 url: <a href="https://gitlab.eps.surrey.ac.uk/ri0005/binary_c-python/-/tree/master">git url</a>.
<br><br>
-Using binary_c with bit branch branch_david: git revision: "6101:20210807:c5232be5c" url: <a href="https://gitlab.eps.surrey.ac.uk/ri0005/binary_c/-/tree/branch_david">git url</a>.
+Using binary_c with bit branch branch_david: git revision: "6162:20210825:093caf0e9" url: <a href="https://gitlab.eps.surrey.ac.uk/ri0005/binary_c/-/tree/branch_david">git url</a>.
diff --git a/docs/build/html/useful_funcs.html b/docs/build/html/useful_funcs.html
index a4282e5c129cc927c5d7c4efe87938c717f42d6c..c2e0dcaca2dd636d72847c8bc6b096160a9eac19 100644
--- a/docs/build/html/useful_funcs.html
+++ b/docs/build/html/useful_funcs.html
@@ -441,9 +441,9 @@ determine if two stars collide on the ZAMS</p>
provided by <a href="https://readthedocs.org">Read the Docs</a>.
<br><br>
-Generated on binarycpython git branch: development_version/2.1.7 git revision b3e29831acaa0f53ec69dc9f97f9d49b48d0c6c9 url: <a href="https://gitlab.eps.surrey.ac.uk/ri0005/binary_c-python/-/tree/development_version/2.1.7">git url</a>.
+Generated on binarycpython git branch: master git revision cac51a6dc71daeeb943b70d5598350ab43901299 url: <a href="https://gitlab.eps.surrey.ac.uk/ri0005/binary_c-python/-/tree/master">git url</a>.
<br><br>
-Using binary_c with bit branch branch_david: git revision: "6101:20210807:c5232be5c" url: <a href="https://gitlab.eps.surrey.ac.uk/ri0005/binary_c/-/tree/branch_david">git url</a>.
+Using binary_c with bit branch branch_david: git revision: "6162:20210825:093caf0e9" url: <a href="https://gitlab.eps.surrey.ac.uk/ri0005/binary_c/-/tree/branch_david">git url</a>.
diff --git a/docs/source/_templates/footer.html b/docs/source/_templates/footer.html
index 60cba1cd1658473febe22d503a757e586ceee32a..614d6567ddc50965e7c33fe1117c275bf69b8b88 100644
--- a/docs/source/_templates/footer.html
+++ b/docs/source/_templates/footer.html
@@ -2,8 +2,8 @@
{%- block extrafooter %}
<br><br>
-Generated on binarycpython git branch: development_version/2.1.7 git revision b3e29831acaa0f53ec69dc9f97f9d49b48d0c6c9 url: <a href="https://gitlab.eps.surrey.ac.uk/ri0005/binary_c-python/-/tree/development_version/2.1.7">git url</a>.
+Generated on binarycpython git branch: master git revision cac51a6dc71daeeb943b70d5598350ab43901299 url: <a href="https://gitlab.eps.surrey.ac.uk/ri0005/binary_c-python/-/tree/master">git url</a>.
<br><br>
-Using binary_c with bit branch branch_david: git revision: "6101:20210807:c5232be5c" url: <a href="https://gitlab.eps.surrey.ac.uk/ri0005/binary_c/-/tree/branch_david">git url</a>.
+Using binary_c with bit branch branch_david: git revision: "6162:20210825:093caf0e9" url: <a href="https://gitlab.eps.surrey.ac.uk/ri0005/binary_c/-/tree/branch_david">git url</a>.
{% endblock %}
\ No newline at end of file
diff --git a/docs/source/binary_c_parameters.rst b/docs/source/binary_c_parameters.rst
index 96a16995f44edbe0c9af9b78993e06515eaadf1b..9d05193ac3eee376842356a9aea21ccba0d96899 100644
--- a/docs/source/binary_c_parameters.rst
+++ b/docs/source/binary_c_parameters.rst
@@ -4,7 +4,7 @@ The following chapter contains all the parameters that the current version of bi
This information was obtained by the following binary_c build:
- **binary_c git branch**: branch_david **binary_c git revision**: 6101:20210807:c5232be5c **Built on**: Aug 7 2021 17:32:06
+ **binary_c git branch**: branch_david **binary_c git revision**: 6162:20210825:093caf0e9 **Built on**: Aug 25 2021 18:02:39
Section: stars
@@ -300,6 +300,22 @@ Section: stars
| **Default value**: 0
| **Macros**: ['GB_WIND_REIMERS = 0', 'GB_WIND_SCHROEDER_CUNTZ_2005 = 1', 'GB_WIND_GOLDMAN_ETAL_2017 = 2', 'GB_WIND_BEASOR_ETAL_2020 = 3']
+| **Parameter**: postagbwind
+| **Description**: Apply special post-(A)GB prescription. Default is POSTAGB_WIND_USE_GIANT which means we just use whatever is prescribed on the giant branch. Other options include: POSTAGB_WIND_NONE = 1 (no wind on the post (A)GB), POSTAGB_WIND_KRTICKA2020 = 2 which uses Krticka, Kubát and Krticková (2020, A&A 635, A173).
+| **Parameter input type**: Integer
+| **Default value**: 0
+| **Macros**: ['POSTAGB_WIND_GIANT = 0', 'POSTAGB_WIND_NONE = 1', 'POSTAGB_WIND_KRTICKA2020 = 2']
+
+| **Parameter**: Teff_postAGB_min
+| **Description**: The minimum temperature for which we apply post-(A)GB winds. See also Teff_postAGB_max. (6000 K)
+| **Parameter input type**: Float
+| **Default value**: 6000
+
+| **Parameter**: Teff_postAGB_max
+| **Description**: The maximum temperature for which we apply post-(A)GB winds. See also Teff_postAGB_min. (120000 K)
+| **Parameter input type**: Float
+| **Default value**: 120000
+
| **Parameter**: mattsson_Orich_tpagbwind
| **Description**: Experimental: turns on Mattsson's TPAGB wind when the star is oxygen rich. Requires MATTSSON_MASS_LOSS.
| **Parameter input type**: Integer
@@ -398,6 +414,11 @@ Section: stars
| **Parameter input type**: Float
| **Default value**: 1
+| **Parameter**: Tout_Pringle_1992_multiplier
+| **Description**: Multiplier for the Tout & Pringle (1992) magnetic wind. (0.0)
+| **Parameter input type**: Float
+| **Default value**: 0
+
| **Parameter**: artificial_mass_accretion_rate%d
| **Description**: Constant mass accretion rate for star <n>.
| **Parameter input type**: Float(scanf)
@@ -442,10 +463,10 @@ Section: stars
| **Default value**: 1
| **Parameter**: BH_prescription
-| **Description**: Black hole mass prescrition: relates the mass of a newly formed black hole to its progenitor's (CO) core mass. 0=Hurley et al 2000/2002, 1=Belczynski (early 2000s).
+| **Description**: Black hole mass prescrition: relates the mass of a newly formed black hole to its progenitor's (CO) core mass. BH_HURLEY2002 = 0 = Hurley et al 2000/2002, BH_BELCZYNSKI = 1 = Belczynski (early 2000s), BH_SPERA2015 = Spera+ 2015, BH_FRYER12_DELAYED = 3 = Fryer et al. (2012) delayed prescription, BH_FRYER12_RAPID = 4 = Fryer et al. (2012) rapid prescription, BH_FRYER12_STARTRACK = 5 = Fryer et al. (2012) startrack prescription.
| **Parameter input type**: Integer
| **Default value**: 0
-| **Macros**: ['BH_HURLEY2002 = 0', 'BH_BELCZYNSKI = 1', 'BH_SPERA2015 = 2', 'BH_FRYER12_DELAYED = 3', 'BH_FRYER12_RAPID = 4']
+| **Macros**: ['BH_HURLEY2002 = 0', 'BH_BELCZYNSKI = 1', 'BH_SPERA2015 = 2', 'BH_FRYER12_DELAYED = 3', 'BH_FRYER12_RAPID = 4', 'BH_FRYER12_STARTRACK = 5']
| **Parameter**: PPISN_prescription
| **Description**: (Pulsational) Pair-Instability Supernova prescription: Relates initial helium core mass of star to whether the star undergoes PPISN or PISN. Requires PPISN flag to be True (see binary_c_parameters.h). 0=no ppisn, 1=Farmer et al 2019.
@@ -1105,6 +1126,16 @@ Section: stars
| **Parameter input type**: Float
| **Default value**: 600000
+| **Parameter**: colour%d
+| **Description**: Sets colour %d (0 to NUM_ANSI_COLOURS-1) to the extended ANSI set colour you choose (1-255, 0 means ignore). The colour numbers are defined in src/logging/ansi_colours.h
+| **Parameter input type**: Int(scanf)
+| **Default value**: NULL
+
+| **Parameter**: apply_Darwin_Radau_correction
+| **Description**: Apply Darwin-Radau correction to the moment of inertia to take rotation into account?
+| **Parameter input type**: True|False
+| **Default value**: False
+
Section: binary
---------------
@@ -2459,6 +2490,12 @@ Section: output
| **Default value**: /tmp/c_log.dat
| **Extra**:
+| **Parameter**: log_arrows
+| **Description**: Add arrows to the output log to show whether values are increasing or decreasing.
+| **Parameter input type**: True|False
+| **Default value**: False
+| **Extra**:
+
| **Parameter**: stopfile
| **Description**: File which, when it exists, will stop the current binary_c repeat run.
| **Parameter input type**: String
@@ -2572,6 +2609,12 @@ Section: input
| **Default value**: NULL
| **Extra**:
+| **Parameter**: MINT_fallback_to_test_data
+| **Description**: If TRUE, use the MINT test_data directory as a fallback when data is unavailable. (FALSE)
+| **Parameter input type**: True|False
+| **Default value**: NULL
+| **Extra**:
+
| **Parameter**: MINT_disable_grid_load_warnings
| **Description**: Use this to explicitly disable MINT's warnings when loading a grid with, e.g., missing or too much data.
| **Parameter input type**: True|False
@@ -2584,6 +2627,24 @@ Section: input
| **Default value**: NULL
| **Extra**:
+| **Parameter**: MINT_nshells
+| **Description**: Set the initial number of shells MINT uses in each star when doing nuclear burning. Note: remeshing can change this. If MINT_nshells is 0, shellular burning and other routines that require shells will not be available. (200)
+| **Parameter input type**: Integer
+| **Default value**: NULL
+| **Extra**:
+
+| **Parameter**: MINT_maximum_nshells
+| **Description**: Set the maximum number of shells MINT uses in each star when doing nuclear burning. Note that this will be limited to MINT_HARD_MAX_NSHELLS. (1000)
+| **Parameter input type**: Integer
+| **Default value**: NULL
+| **Extra**:
+
+| **Parameter**: MINT_minimum_nshells
+| **Description**: Set the minimum number of shells MINT uses in each star when doing nuclear burning. Note that this will be greater than or equal to MINT_HARD_MIN_NSHELLS, which is 0 by default. (0)
+| **Parameter input type**: Integer
+| **Default value**: NULL
+| **Extra**:
+
| **Parameter**: MINT_Kippenhahn_stellar_type
| **Description**: Stellar type selector for Kippenhahn plots. Set to -1 to ignore, otherwise the stellar type number for which Kippenhahn plot data should be output.
| **Parameter input type**: Integer
diff --git a/docs/source/notebook_individual_systems.ipynb b/docs/source/notebook_individual_systems.ipynb
index 19c2d29fbd316324eb39a361e897be2b835955e8..21d49016f3b2826d6f9d5ec87a1f6d8bb18df7af 100644
--- a/docs/source/notebook_individual_systems.ipynb
+++ b/docs/source/notebook_individual_systems.ipynb
@@ -28,6 +28,18 @@
{
"cell_type": "code",
"execution_count": 1,
+ "id": "e32dcdee",
+ "metadata": {},
+ "outputs": [],
+ "source": [
+ "import os\n",
+ "from binarycpython.utils.functions import temp_dir\n",
+ "TMP_DIR = temp_dir(\"notebooks\", \"notebook_individual_systems\")"
+ ]
+ },
+ {
+ "cell_type": "code",
+ "execution_count": 2,
"id": "425efed3-d8e3-432d-829e-41d8ebe05162",
"metadata": {},
"outputs": [],
@@ -38,7 +50,7 @@
},
{
"cell_type": "code",
- "execution_count": 2,
+ "execution_count": 3,
"id": "b2abab48-433d-4936-8434-14804c52c9f6",
"metadata": {},
"outputs": [
@@ -46,7 +58,7 @@
"name": "stdout",
"output_type": "stream",
"text": [
- "SINGLE_STAR_LIFETIME 1 12462\n",
+ "SINGLE_STAR_LIFETIME 1 12461.9\n",
"\n"
]
}
@@ -66,7 +78,7 @@
},
{
"cell_type": "code",
- "execution_count": 3,
+ "execution_count": 4,
"id": "029fc3f2-f09a-49af-a32b-248505738f2e",
"metadata": {},
"outputs": [
@@ -74,24 +86,25 @@
"name": "stdout",
"output_type": "stream",
"text": [
- " TIME M1 M2 K1 K2 SEP ECC R1/ROL1 R2/ROL2 TYPE RANDOM_SEED=67365 RANDOM_COUNT=0\n",
- " 0.0000 1.000 0.000 1 15 -1 -1.00 0.000 0.000 \"INITIAL \"\n",
- " 11003.1302 1.000 0.000 2 15 -1 -1.00 0.000 0.000 \"OFF_MS\"\n",
- " 11003.1302 1.000 0.000 2 15 -1 -1.00 0.000 0.000 \"TYPE_CHNGE\"\n",
- " 11582.2424 1.000 0.000 3 15 -1 -1.00 0.000 0.000 \"TYPE_CHNGE\"\n",
- " 12325.1085 0.817 0.000 4 15 -1 -1.00 0.000 0.000 \"TYPE_CHNGE\"\n",
- " 12457.1300 0.783 0.000 5 15 -1 -1.00 0.000 0.000 \"TYPE_CHNGE\"\n",
- " 12460.8955 0.774 0.000 6 15 -1 -1.00 0.000 0.000 \"TYPE_CHNGE\"\n",
- " 12460.8955 0.774 0.000 6 15 -1 -1.00 0.000 0.000 \"shrinkAGB\"\n",
- " 12461.9514 0.523 0.000 11 15 -1 -1.00 0.000 0.000 \"TYPE_CHNGE\"\n",
- " 15000.0000 0.523 0.000 11 15 -1 -1.00 0.000 0.000 \"MAX_TIME\"\n",
+ " TIME M1 M2 K1 K2 SEP PER ECC R1/ROL1 R2/ROL2 TYPE RANDOM_SEED=17089 RANDOM_COUNT=0\n",
+ " 0.0000 1.000 0.000 1 15 -1 -1 -1.00 0.000 0.000 \"INITIAL \"\n",
+ " 11003.1302 1.000 0.000 2 15 -1 -1 -1.00 0.000 0.000 \"OFF_MS\"\n",
+ " 11003.1302 1.000 0.000 2 15 -1 -1 -1.00 0.000 0.000 \"TYPE_CHNGE\"\n",
+ " 11582.2424 1.000 0.000 3 15 -1 -1 -1.00 0.000 0.000 \"TYPE_CHNGE\"\n",
+ " 12325.1085 0.817 0.000 4 15 -1 -1 -1.00 0.000 0.000 \"TYPE_CHNGE\"\n",
+ " 12457.1301 0.783 0.000 5 15 -1 -1 -1.00 0.000 0.000 \"TYPE_CHNGE\"\n",
+ " 12460.9983 0.716 0.000 6 15 -1 -1 -1.00 0.000 0.000 \"TYPE_CHNGE\"\n",
+ " 12460.9983 0.716 0.000 6 15 -1 -1 -1.00 0.000 0.000 \"shrinkAGB\"\n",
+ " 12461.9458 0.518 0.000 11 15 -1 -1 -1.00 0.000 0.000 \"TYPE_CHNGE\"\n",
+ " 15000.0000 0.518 0.000 11 15 -1 -1 -1.00 0.000 0.000 \"MAX_TIME\"\n",
"\n"
]
}
],
"source": [
- "output = run_system(M_1=1, log_filename='/tmp/test_logfile.txt')\n",
- "with open('/tmp/test_logfile.txt', 'r') as f:\n",
+ "log_filename = os.path.join(TMP_DIR, 'test_logfile.txt')\n",
+ "output = run_system(M_1=1, log_filename=log_filename, api_log_filename_prefix=TMP_DIR)\n",
+ "with open(log_filename, 'r') as f:\n",
" print(f.read())"
]
},
@@ -105,7 +118,7 @@
},
{
"cell_type": "code",
- "execution_count": 6,
+ "execution_count": 5,
"id": "e6a23b55-ca42-440d-83ac-e76a24a83a67",
"metadata": {
"tags": []
@@ -115,7 +128,10 @@
"name": "stdout",
"output_type": "stream",
"text": [
- "['EXAMPLE_MASSLOSS 0.000000000000e+00 1 1 1', 'EXAMPLE_MASSLOSS 0.000000000000e+00 1 1 1', 'EXAMPLE_MASSLOSS 1.000000000000e-06 1 1 1', 'EXAMPLE_MASSLOSS 2.000000000000e-06 1 1 1']\n"
+ "EXAMPLE_MASSLOSS 0.000000000000e+00 1 1 1\n",
+ "EXAMPLE_MASSLOSS 0.000000000000e+00 1 1 1\n",
+ "EXAMPLE_MASSLOSS 1.000000000000e-06 1 1 1\n",
+ "EXAMPLE_MASSLOSS 2.000000000000e-06 1 1 1\n"
]
}
],
@@ -137,8 +153,8 @@
"# Generate entire shared lib code around logging lines\n",
"custom_logging_code = binary_c_log_code(custom_logging_print_statement)\n",
"\n",
- "output = run_system(M_1=1, custom_logging_code=custom_logging_code)\n",
- "print(output.splitlines()[:4])"
+ "output = run_system(M_1=1, custom_logging_code=custom_logging_code, api_log_filename_prefix=TMP_DIR)\n",
+ "print('\\n'.join(output.splitlines()[:4]))"
]
},
{
@@ -151,7 +167,7 @@
},
{
"cell_type": "code",
- "execution_count": 7,
+ "execution_count": 6,
"id": "3822721f-217a-495b-962e-d57137b9e290",
"metadata": {},
"outputs": [
@@ -201,7 +217,7 @@
},
{
"cell_type": "code",
- "execution_count": 8,
+ "execution_count": 7,
"id": "654a07ed-2a88-46ff-9da0-b7759580f9f3",
"metadata": {},
"outputs": [
@@ -216,13 +232,13 @@
"4 2e-06 1 1 1\n",
"5 3e-06 1 1 1\n",
"... ... ... ... ...\n",
- "1612 12461.8 0.577754 1 6\n",
- "1613 12462 0.522806 1 11\n",
- "1614 13462 0.522806 1 11\n",
- "1615 14462 0.522806 1 11\n",
- "1616 15000 0.522806 1 11\n",
+ "1617 12461.8 0.546683 1 6\n",
+ "1618 12461.9 0.517749 1 11\n",
+ "1619 13461.9 0.517749 1 11\n",
+ "1620 14461.9 0.517749 1 11\n",
+ "1621 15000 0.517749 1 11\n",
"\n",
- "[1616 rows x 4 columns]\n"
+ "[1621 rows x 4 columns]\n"
]
}
],
@@ -252,7 +268,7 @@
},
{
"cell_type": "code",
- "execution_count": 9,
+ "execution_count": 8,
"id": "4a98ffca-1b72-4bb8-8df1-3bf3187d882f",
"metadata": {},
"outputs": [],
@@ -271,7 +287,7 @@
},
{
"cell_type": "code",
- "execution_count": 10,
+ "execution_count": 9,
"id": "bff1cc2e-6b32-4ba0-879f-879ffbabd223",
"metadata": {},
"outputs": [
@@ -279,11 +295,12 @@
"name": "stdout",
"output_type": "stream",
"text": [
+ "adding: api_log_filename_prefix=/tmp/binary_c_python/notebooks/notebook_individual_systems to BSE_options\n",
"adding: M_1=10 to BSE_options\n",
"Creating and loading custom logging functionality\n",
- "Running binary_c M_1 10\n",
+ "Running binary_c M_1 10 api_log_filename_prefix /tmp/binary_c_python/notebooks/notebook_individual_systems\n",
"Cleaning up the custom logging stuff. type: single\n",
- "SINGLE_STAR_LIFETIME 10 27.7358\n",
+ "SINGLE_STAR_LIFETIME 10 28.4838\n",
"\n"
]
}
@@ -294,7 +311,8 @@
"\n",
"# Set some parameters\n",
"example_pop.set(\n",
- " verbosity=1\n",
+ " verbosity=1,\n",
+ " api_log_filename_prefix=TMP_DIR\n",
")\n",
"example_pop.set(\n",
" M_1=10\n",
@@ -315,7 +333,7 @@
},
{
"cell_type": "code",
- "execution_count": 13,
+ "execution_count": 10,
"id": "dd748bab-b57e-4129-8350-9ea11fa179d0",
"metadata": {
"scrolled": true,
@@ -338,10 +356,13 @@
");\n",
" to grid_options\n",
"Creating and loading custom logging functionality\n",
- "Running binary_c M_1 10\n",
+ "Running binary_c M_1 10 api_log_filename_prefix /tmp/binary_c_python/notebooks/notebook_individual_systems\n",
"Cleaning up the custom logging stuff. type: single\n",
- "Removed /tmp/binary_c_python/custom_logging/libcustom_logging_eac2dfc438a14e5a9f5be98b1b6b4294.so\n",
- "['EXAMPLE_MASSLOSS 0.000000000000e+00 10 0 10 1', 'EXAMPLE_MASSLOSS 0.000000000000e+00 10 10 10 1', 'EXAMPLE_MASSLOSS 1.000000000000e-06 10 10 10 1', 'EXAMPLE_MASSLOSS 2.000000000000e-06 10 10 10 1']\n"
+ "Removed /tmp/binary_c_python/custom_logging/libcustom_logging_8967553693ac4e11a49c42d4eef773e8.so\n",
+ "EXAMPLE_MASSLOSS 0.000000000000e+00 10 0 10 1\n",
+ "EXAMPLE_MASSLOSS 0.000000000000e+00 10 10 10 1\n",
+ "EXAMPLE_MASSLOSS 1.000000000000e-06 10 10 10 1\n",
+ "EXAMPLE_MASSLOSS 2.000000000000e-06 10 10 10 1\n"
]
}
],
@@ -362,7 +383,7 @@
"\n",
"# get output and print\n",
"output = example_pop.evolve_single()\n",
- "print(output.splitlines()[:4])"
+ "print('\\n'.join(output.splitlines()[:4]))"
]
},
{
@@ -377,7 +398,7 @@
},
{
"cell_type": "code",
- "execution_count": 14,
+ "execution_count": 11,
"id": "fec39154-cce6-438c-8c2c-509d76b00f34",
"metadata": {},
"outputs": [],
@@ -428,7 +449,7 @@
},
{
"cell_type": "code",
- "execution_count": 15,
+ "execution_count": 12,
"id": "57347512-fd4a-434b-b13c-5e6dbd3ac415",
"metadata": {
"scrolled": true,
@@ -439,12 +460,13 @@
"name": "stdout",
"output_type": "stream",
"text": [
- "adding: parse_function=<function object_parse_function at 0x7f9265091598> to grid_options\n",
- "<<<< Warning: Key does not match previously known parameter: adding: output_dir=/tmp/ to custom_options >>>>\n",
+ "adding: parse_function=<function object_parse_function at 0x7fb4d41ebbf8> to grid_options\n",
+ "<<<< Warning: Key does not match previously known parameter: adding: output_dir=/tmp/binary_c_python/notebooks/notebook_individual_systems to custom_options >>>>\n",
+ "adding: api_log_filename_prefix=/tmp/binary_c_python/notebooks/notebook_individual_systems to BSE_options\n",
"Creating and loading custom logging functionality\n",
- "Running binary_c M_1 10\n",
+ "Running binary_c M_1 10 api_log_filename_prefix /tmp/binary_c_python/notebooks/notebook_individual_systems\n",
"Cleaning up the custom logging stuff. type: single\n",
- "Removed /tmp/binary_c_python/custom_logging/libcustom_logging_e9c2bec7f15541eb847fc6013e48e7ed.so\n",
+ "Removed /tmp/binary_c_python/custom_logging/libcustom_logging_5d7779e8190e4b79b10c7e6a44cb0e7e.so\n",
"[['time', 'mass', 'initial_mass', 'stellar_type'], [0.0, 10.0, 0.0, 10.0, 1.0], [0.0, 10.0, 10.0, 10.0, 1.0], [1e-06, 10.0, 10.0, 10.0, 1.0]]\n",
"dict_keys(['time', 'mass', 'initial_mass', 'stellar_type'])\n"
]
@@ -453,7 +475,8 @@
"source": [
"example_pop.set(\n",
" parse_function=object_parse_function,\n",
- " output_dir='/tmp/'\n",
+ " output_dir=TMP_DIR,\n",
+ " api_log_filename_prefix=TMP_DIR\n",
")\n",
"output = example_pop.evolve_single()\n",
"print(output[:4])\n",
@@ -488,7 +511,7 @@
},
{
"cell_type": "code",
- "execution_count": 16,
+ "execution_count": 13,
"id": "ec48125c-6bf5-48f4-9357-8261800b5d8b",
"metadata": {},
"outputs": [
@@ -496,7 +519,7 @@
"name": "stdout",
"output_type": "stream",
"text": [
- "SINGLE_STAR_LIFETIME 15 14.2383\n",
+ "SINGLE_STAR_LIFETIME 15 14.9947\n",
"\n"
]
}
@@ -510,10 +533,11 @@
"eccentricity = 0.0\n",
"metallicity = 0.02\n",
"max_evolution_time = 15000 # Myr. You need to include this argument.\n",
+ "api_log_filename_prefix = TMP_DIR\n",
"\n",
"# Here we set up the argument string that is passed to the bindings\n",
"argstring = \"\"\"\n",
- "binary_c M_1 {M_1} M_2 {M_2} separation {separation} orbital_period {orbital_period} eccentricity {eccentricity} metallicity {metallicity} max_evolution_time {max_evolution_time}\n",
+ "binary_c M_1 {M_1} M_2 {M_2} separation {separation} orbital_period {orbital_period} eccentricity {eccentricity} metallicity {metallicity} max_evolution_time {max_evolution_time} api_log_filename_prefix {api_log_filename_prefix}\n",
"\"\"\".format(\n",
" M_1=M_1,\n",
" M_2=M_2,\n",
@@ -522,6 +546,7 @@
" eccentricity=eccentricity,\n",
" metallicity=metallicity,\n",
" max_evolution_time=max_evolution_time,\n",
+ " api_log_filename_prefix=TMP_DIR\n",
").strip()\n",
"\n",
"from binarycpython import _binary_c_bindings\n",
diff --git a/docs/source/notebook_population.ipynb b/docs/source/notebook_population.ipynb
index 56f3b153c23064e82863f188906d50243e795715..b6a37baa8d90a2f36c0fd19311548ed49e77f173 100644
--- a/docs/source/notebook_population.ipynb
+++ b/docs/source/notebook_population.ipynb
@@ -3,7 +3,9 @@
{
"cell_type": "markdown",
"id": "bbbaafbb-fd7d-4b73-a970-93506ba35d71",
- "metadata": {},
+ "metadata": {
+ "tags": []
+ },
"source": [
"# Running populations with binarycpython\n",
"This notebook will show you how to evolve a population of stars\n",
@@ -27,15 +29,6 @@
"# help(Population) # Uncomment to see the public functions of this object"
]
},
- {
- "cell_type": "markdown",
- "id": "a081ab23-7822-4971-aa82-991548534714",
- "metadata": {},
- "source": [
- "- running ensemble\n",
- "- using M&S grid"
- ]
- },
{
"cell_type": "markdown",
"id": "f268eff3-4e08-4f6b-8b59-f22dba4d2074",
@@ -329,7 +322,7 @@
],
"source": [
"# Add grid variables\n",
- "resolution = {\"M_1\": 20, \"q\": 20, \"per\": 40}\n",
+ "resolution = {\"M_1\": 20}\n",
"\n",
"# Mass\n",
"example_pop.add_grid_variable(\n",
@@ -1125,7 +1118,7 @@
")\n",
"\n",
"# Add grid variables\n",
- "resolution = {\"M_1\": 5, \"q\": 5, \"per\": 5}\n",
+ "resolution = {\"M_1\": 3, \"q\": 3, \"per\": 3}\n",
"\n",
"# Mass\n",
"example_pop.add_grid_variable(\n",