From 9483e4fe7c60e6ff1ca89f1b9317b23153b0e8b8 Mon Sep 17 00:00:00 2001
From: dh00601 <dh00601@surrey.ac.uk>
Date: Sat, 8 Jan 2022 12:14:26 +0000
Subject: [PATCH] rebuilt docs
---
.../doctrees/binary_c_parameters.doctree | Bin 974315 -> 973859 bytes
docs/build/doctrees/environment.pickle | Bin 807851 -> 889515 bytes
.../examples/old/basic_example.doctree | Bin 9908 -> 10455 bytes
docs/build/doctrees/functions.doctree | Bin 149680 -> 166538 bytes
docs/build/doctrees/grid.doctree | Bin 79369 -> 79342 bytes
docs/build/doctrees/modules.doctree | Bin 3750 -> 3841 bytes
.../nbsphinx/examples/old/basic_example.ipynb | 13 +-
.../old/workshop_example_notebook.ipynb | 4 +-
...png => examples_old_basic_example_3_1.png} | Bin
.../Moe_di_Stefano_2017.doctree | Bin 0 -> 20514 bytes
.../distribution_functions.doctree | Bin 293615 -> 292511 bytes
.../grid_logging.doctree | Bin 0 -> 15451 bytes
.../spacing_functions.doctree | Bin 72641 -> 71987 bytes
...png => examples_old_basic_example_3_1.png} | Bin
.../utils/custom_logging_functions.html | 4 +-
.../_modules/binarycpython/utils/dicts.html | 4 +-
.../binarycpython/utils/ensemble.html | 4 +-
.../binarycpython/utils/functions.html | 113 +-
.../_modules/binarycpython/utils/grid.html | 4 +-
.../binarycpython/utils/plot_functions.html | 4 +-
.../utils/population_extensions/HPC.html | 4 +-
.../Moe_di_Stefano_2017.html | 1338 +++++++++++++++++
.../population_extensions/analytics.html | 4 +-
.../utils/population_extensions/cache.html | 4 +-
.../utils/population_extensions/condor.html | 4 +-
.../utils/population_extensions/dataIO.html | 4 +-
.../distribution_functions.html | 28 +-
.../population_extensions/grid_logging.html | 573 +++++++
.../grid_options_defaults.html | 4 +-
.../utils/population_extensions/gridcode.html | 4 +-
.../utils/population_extensions/metadata.html | 4 +-
.../utils/population_extensions/slurm.html | 4 +-
.../spacing_functions.html | 27 +-
.../population_extensions/version_info.html | 4 +-
.../utils/run_system_wrapper.html | 4 +-
.../binarycpython/utils/useful_funcs.html | 4 +-
docs/build/html/_modules/index.html | 6 +-
.../html/_sources/binary_c_parameters.rst.txt | 4 +-
.../examples/old/basic_example.ipynb.txt | 13 +-
.../old/workshop_example_notebook.ipynb.txt | 4 +-
docs/build/html/_sources/grid.rst.txt | 4 +-
.../Moe_di_Stefano_2017.rst.txt | 7 +
.../grid_logging.rst.txt | 7 +
docs/build/html/binary_c_parameters.html | 8 +-
docs/build/html/custom_logging_functions.html | 8 +-
docs/build/html/dicts.html | 8 +-
docs/build/html/ensemble.html | 8 +-
docs/build/html/example_notebooks.html | 4 +-
docs/build/html/examples/notebook_BHBH.html | 4 +-
docs/build/html/examples/notebook_HRD.html | 4 +-
.../examples/notebook_api_functionality.html | 4 +-
.../notebook_common_envelope_evolution.html | 4 +-
.../examples/notebook_custom_logging.html | 4 +-
.../examples/notebook_extra_features.html | 4 +-
.../examples/notebook_individual_systems.html | 4 +-
...notebook_luminosity_function_binaries.html | 4 +-
.../notebook_luminosity_function_single.html | 4 +-
.../examples/notebook_massive_remnants.html | 4 +-
.../html/examples/notebook_population.html | 4 +-
.../html/examples/notebook_solar_system.html | 4 +-
.../html/examples/old/basic_example.html | 16 +-
.../html/examples/old/basic_example.ipynb | 13 +-
.../old/workshop_example_notebook.html | 4 +-
.../old/workshop_example_notebook.ipynb | 4 +-
docs/build/html/functions.html | 149 +-
docs/build/html/genindex.html | 58 +-
docs/build/html/grid.html | 16 +-
.../build/html/grid_options_descriptions.html | 4 +-
docs/build/html/index.html | 8 +-
docs/build/html/modules.html | 12 +-
docs/build/html/objects.inv | Bin 11008 -> 11412 bytes
docs/build/html/plot_functions.html | 12 +-
.../build/html/population_extensions/HPC.html | 8 +-
.../Moe_di_Stefano_2017.html | 213 +++
.../html/population_extensions/analytics.html | 8 +-
.../html/population_extensions/cache.html | 8 +-
.../html/population_extensions/condor.html | 8 +-
.../html/population_extensions/dataIO.html | 8 +-
.../distribution_functions.html | 34 +-
.../population_extensions/grid_logging.html | 200 +++
.../grid_options_defaults.html | 12 +-
.../html/population_extensions/gridcode.html | 12 +-
.../html/population_extensions/metadata.html | 12 +-
.../html/population_extensions/slurm.html | 12 +-
.../spacing_functions.html | 40 +-
.../population_extensions/version_info.html | 8 +-
docs/build/html/py-modindex.html | 14 +-
docs/build/html/readme_link.html | 4 +-
docs/build/html/run_system_wrapper.html | 8 +-
docs/build/html/search.html | 4 +-
docs/build/html/searchindex.js | 2 +-
docs/build/html/stellar_types.html | 8 +-
docs/build/html/useful_funcs.html | 8 +-
docs/source/_templates/footer.html | 4 +-
docs/source/binary_c_parameters.rst | 4 +-
docs/source/conf.py | 24 +-
docs/source/examples/old/basic_example.ipynb | 13 +-
.../old/workshop_example_notebook.ipynb | 4 +-
.../Moe_di_Stefano_2017.rst | 7 +
.../population_extensions/grid_logging.rst | 7 +
100 files changed, 2914 insertions(+), 369 deletions(-)
rename docs/build/doctrees/nbsphinx/{examples_old_basic_example_1_1.png => examples_old_basic_example_3_1.png} (100%)
create mode 100644 docs/build/doctrees/population_extensions/Moe_di_Stefano_2017.doctree
create mode 100644 docs/build/doctrees/population_extensions/grid_logging.doctree
rename docs/build/html/_images/{examples_old_basic_example_1_1.png => examples_old_basic_example_3_1.png} (100%)
create mode 100644 docs/build/html/_modules/binarycpython/utils/population_extensions/Moe_di_Stefano_2017.html
create mode 100644 docs/build/html/_modules/binarycpython/utils/population_extensions/grid_logging.html
create mode 100644 docs/build/html/_sources/population_extensions/Moe_di_Stefano_2017.rst.txt
create mode 100644 docs/build/html/_sources/population_extensions/grid_logging.rst.txt
create mode 100644 docs/build/html/population_extensions/Moe_di_Stefano_2017.html
create mode 100644 docs/build/html/population_extensions/grid_logging.html
create mode 100644 docs/source/population_extensions/Moe_di_Stefano_2017.rst
create mode 100644 docs/source/population_extensions/grid_logging.rst
diff --git a/docs/build/doctrees/binary_c_parameters.doctree b/docs/build/doctrees/binary_c_parameters.doctree
index cf305410f445c73af0d6be545245094c96876506..574058fe9080841b85fc44748668a79e1a90fbb2 100644
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diff --git a/docs/build/doctrees/environment.pickle b/docs/build/doctrees/environment.pickle
index 2113a1a9c13bdb5641683b19aea249207571ab8b..39df13a0b90a951f20181d4d80eea59179a009f4 100644
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diff --git a/docs/build/doctrees/examples/old/basic_example.doctree b/docs/build/doctrees/examples/old/basic_example.doctree
index 1e70ff402cdaed71164f6a02d118a0a4ae47b6e3..62d18bbe2862b8c8f7a52baad1a62c57e45ca166 100644
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diff --git a/docs/build/doctrees/functions.doctree b/docs/build/doctrees/functions.doctree
index 35b607eede09ade1ce809077ca202eee40068fb3..8812add557b056c2e46bab2cbdf4d773194e0f45 100644
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diff --git a/docs/build/doctrees/grid.doctree b/docs/build/doctrees/grid.doctree
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diff --git a/docs/build/doctrees/modules.doctree b/docs/build/doctrees/modules.doctree
index 8b38873c1495f2a343a40c2341c2d309ef859ead..5f86b79f2523bda448fcaae2cc0c2cbcb3fb4c8e 100644
GIT binary patch
delta 136
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delta 67
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diff --git a/docs/build/doctrees/nbsphinx/examples/old/basic_example.ipynb b/docs/build/doctrees/nbsphinx/examples/old/basic_example.ipynb
index 9078cfcb5..7146b9767 100644
--- a/docs/build/doctrees/nbsphinx/examples/old/basic_example.ipynb
+++ b/docs/build/doctrees/nbsphinx/examples/old/basic_example.ipynb
@@ -1,5 +1,14 @@
{
"cells": [
+ {
+ "cell_type": "markdown",
+ "id": "c09b9f85-5250-4fd2-8142-bb8097d138b5",
+ "metadata": {},
+ "source": [
+ "# Basic example\n",
+ "Running a single system"
+ ]
+ },
{
"cell_type": "code",
"execution_count": 1,
@@ -106,7 +115,7 @@
],
"metadata": {
"kernelspec": {
- "display_name": "Python 3",
+ "display_name": "Python 3 (ipykernel)",
"language": "python",
"name": "python3"
},
@@ -120,7 +129,7 @@
"name": "python",
"nbconvert_exporter": "python",
"pygments_lexer": "ipython3",
- "version": "3.6.4"
+ "version": "3.9.9"
}
},
"nbformat": 4,
diff --git a/docs/build/doctrees/nbsphinx/examples/old/workshop_example_notebook.ipynb b/docs/build/doctrees/nbsphinx/examples/old/workshop_example_notebook.ipynb
index 4eca58797..78d0860ad 100644
--- a/docs/build/doctrees/nbsphinx/examples/old/workshop_example_notebook.ipynb
+++ b/docs/build/doctrees/nbsphinx/examples/old/workshop_example_notebook.ipynb
@@ -619,7 +619,7 @@
],
"metadata": {
"kernelspec": {
- "display_name": "Python 3",
+ "display_name": "Python 3 (ipykernel)",
"language": "python",
"name": "python3"
},
@@ -633,7 +633,7 @@
"name": "python",
"nbconvert_exporter": "python",
"pygments_lexer": "ipython3",
- "version": "3.6.4"
+ "version": "3.9.9"
}
},
"nbformat": 4,
diff --git a/docs/build/doctrees/nbsphinx/examples_old_basic_example_1_1.png b/docs/build/doctrees/nbsphinx/examples_old_basic_example_3_1.png
similarity index 100%
rename from docs/build/doctrees/nbsphinx/examples_old_basic_example_1_1.png
rename to docs/build/doctrees/nbsphinx/examples_old_basic_example_3_1.png
diff --git a/docs/build/doctrees/population_extensions/Moe_di_Stefano_2017.doctree b/docs/build/doctrees/population_extensions/Moe_di_Stefano_2017.doctree
new file mode 100644
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diff --git a/docs/build/doctrees/population_extensions/spacing_functions.doctree b/docs/build/doctrees/population_extensions/spacing_functions.doctree
index 6063fb67cece6692fcc082bdcc23857c039253ba..2fd67c589c99fd60dc6ce4ee8a4be13d4fc7d95a 100644
GIT binary patch
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diff --git a/docs/build/html/_images/examples_old_basic_example_1_1.png b/docs/build/html/_images/examples_old_basic_example_3_1.png
similarity index 100%
rename from docs/build/html/_images/examples_old_basic_example_1_1.png
rename to docs/build/html/_images/examples_old_basic_example_3_1.png
diff --git a/docs/build/html/_modules/binarycpython/utils/custom_logging_functions.html b/docs/build/html/_modules/binarycpython/utils/custom_logging_functions.html
index fff44fe1f..6a521fc97 100644
--- a/docs/build/html/_modules/binarycpython/utils/custom_logging_functions.html
+++ b/docs/build/html/_modules/binarycpython/utils/custom_logging_functions.html
@@ -552,9 +552,9 @@
provided by <a href="https://readthedocs.org">Read the Docs</a>.
<br><br>
-Generated on binarycpython git branch: development_0.9.3/2.2.1 git revision 8f3ed88f14c91d76a1fccf71294de4f0e9a160fd url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c-python/-/tree/development_0.9.3/2.2.1">git url</a>.
+Generated on binarycpython git branch: development_0.9.3/2.2.1 git revision 6c50cae388f9d9326bbb687ca0ecdc2df766f7f5 url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c-python/-/tree/development_0.9.3/2.2.1">git url</a>.
<br><br>
-Using binary_c with bit branch branch_david: git revision: "5834:20211216:a3146490e" url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c/-/tree/branch_david">git url</a>.
+Using binary_c with bit branch branch_david: git revision: "5845:20220107:201620bd7" url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c/-/tree/branch_david">git url</a>.
diff --git a/docs/build/html/_modules/binarycpython/utils/dicts.html b/docs/build/html/_modules/binarycpython/utils/dicts.html
index f2bf48153..3baf7f1bd 100644
--- a/docs/build/html/_modules/binarycpython/utils/dicts.html
+++ b/docs/build/html/_modules/binarycpython/utils/dicts.html
@@ -904,9 +904,9 @@
provided by <a href="https://readthedocs.org">Read the Docs</a>.
<br><br>
-Generated on binarycpython git branch: development_0.9.3/2.2.1 git revision 8f3ed88f14c91d76a1fccf71294de4f0e9a160fd url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c-python/-/tree/development_0.9.3/2.2.1">git url</a>.
+Generated on binarycpython git branch: development_0.9.3/2.2.1 git revision 6c50cae388f9d9326bbb687ca0ecdc2df766f7f5 url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c-python/-/tree/development_0.9.3/2.2.1">git url</a>.
<br><br>
-Using binary_c with bit branch branch_david: git revision: "5834:20211216:a3146490e" url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c/-/tree/branch_david">git url</a>.
+Using binary_c with bit branch branch_david: git revision: "5845:20220107:201620bd7" url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c/-/tree/branch_david">git url</a>.
diff --git a/docs/build/html/_modules/binarycpython/utils/ensemble.html b/docs/build/html/_modules/binarycpython/utils/ensemble.html
index 60695f545..c728ad217 100644
--- a/docs/build/html/_modules/binarycpython/utils/ensemble.html
+++ b/docs/build/html/_modules/binarycpython/utils/ensemble.html
@@ -467,9 +467,9 @@
provided by <a href="https://readthedocs.org">Read the Docs</a>.
<br><br>
-Generated on binarycpython git branch: development_0.9.3/2.2.1 git revision 8f3ed88f14c91d76a1fccf71294de4f0e9a160fd url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c-python/-/tree/development_0.9.3/2.2.1">git url</a>.
+Generated on binarycpython git branch: development_0.9.3/2.2.1 git revision 6c50cae388f9d9326bbb687ca0ecdc2df766f7f5 url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c-python/-/tree/development_0.9.3/2.2.1">git url</a>.
<br><br>
-Using binary_c with bit branch branch_david: git revision: "5834:20211216:a3146490e" url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c/-/tree/branch_david">git url</a>.
+Using binary_c with bit branch branch_david: git revision: "5845:20220107:201620bd7" url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c/-/tree/branch_david">git url</a>.
diff --git a/docs/build/html/_modules/binarycpython/utils/functions.html b/docs/build/html/_modules/binarycpython/utils/functions.html
index d89b6bc4c..cd44eac03 100644
--- a/docs/build/html/_modules/binarycpython/utils/functions.html
+++ b/docs/build/html/_modules/binarycpython/utils/functions.html
@@ -109,28 +109,30 @@
<span class="c1">########################################################</span>
-<div class="viewcode-block" id="now"><a class="viewcode-back" href="../../../functions.html#binarycpython.utils.functions.now">[docs]</a><span class="k">def</span> <span class="nf">now</span><span class="p">(</span><span class="n">now_object</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="n">style</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="n">specifier</span><span class="o">=</span><span class="kc">None</span><span class="p">):</span>
+<div class="viewcode-block" id="now"><a class="viewcode-back" href="../../../functions.html#binarycpython.utils.functions.now">[docs]</a><span class="k">def</span> <span class="nf">now</span><span class="p">(</span><span class="n">now_object</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="n">style</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="n">custom_format</span><span class="o">=</span><span class="kc">None</span><span class="p">):</span>
<span class="sd">"""</span>
-<span class="sd"> convenience function to return a string of the current time,</span>
-<span class="sd"> using the format "%m/%d/%Y %H:%M:%S"</span>
+<span class="sd"> convenience function to return a string of the current time, using the format ``%m/%d/%Y %H:%M:%S``</span>
<span class="sd"> Args:</span>
-<span class="sd"> style : if "nospace" then return the date/time with the format</span>
-<span class="sd"> "%Y%m%d_%H%M%S"</span>
+<span class="sd"> style : if "nospace" then return the date/time with the format ``%Y%m%d_%H%M%S``, else use format ``%m/%d/%Y %H:%M:%S``</span>
-<span class="sd"> specifier: if set, uses this as a specifier rather than whatever is set by default or in the style variable</span>
+<span class="sd"> custom_format: if set, uses this as a format rather than whatever is set by default or in the style variable</span>
<span class="sd"> """</span>
+
<span class="k">if</span> <span class="ow">not</span> <span class="n">now_object</span><span class="p">:</span>
<span class="n">now_object</span> <span class="o">=</span> <span class="n">datetime</span><span class="o">.</span><span class="n">datetime</span><span class="o">.</span><span class="n">now</span><span class="p">()</span>
- <span class="k">if</span> <span class="ow">not</span> <span class="n">specifier</span><span class="p">:</span>
+
+ <span class="k">if</span> <span class="ow">not</span> <span class="n">custom_format</span><span class="p">:</span>
<span class="k">if</span> <span class="n">style</span> <span class="o">==</span> <span class="s2">"nospace"</span><span class="p">:</span>
<span class="c1"># special case</span>
- <span class="n">specifier</span> <span class="o">=</span> <span class="s2">"%Y%m</span><span class="si">%d</span><span class="s2">_%H%M%S"</span>
+ <span class="n">date_format</span> <span class="o">=</span> <span class="s2">"%Y%m</span><span class="si">%d</span><span class="s2">_%H%M%S"</span>
<span class="k">else</span><span class="p">:</span>
<span class="c1"># our default</span>
- <span class="n">specifier</span> <span class="o">=</span> <span class="s2">"%m/</span><span class="si">%d</span><span class="s2">/%Y %H:%M:%S"</span>
+ <span class="n">date_format</span> <span class="o">=</span> <span class="s2">"%m/</span><span class="si">%d</span><span class="s2">/%Y %H:%M:%S"</span>
+ <span class="k">else</span><span class="p">:</span>
+ <span class="n">date_format</span> <span class="o">=</span> <span class="n">custom_format</span>
- <span class="k">return</span> <span class="n">datetime</span><span class="o">.</span><span class="n">datetime</span><span class="o">.</span><span class="n">strftime</span><span class="p">(</span><span class="n">now_object</span><span class="p">,</span> <span class="n">specifier</span><span class="p">)</span></div>
+ <span class="k">return</span> <span class="n">datetime</span><span class="o">.</span><span class="n">datetime</span><span class="o">.</span><span class="n">strftime</span><span class="p">(</span><span class="n">now_object</span><span class="p">,</span> <span class="n">date_format</span><span class="p">)</span></div>
<div class="viewcode-block" id="format_number"><a class="viewcode-back" href="../../../functions.html#binarycpython.utils.functions.format_number">[docs]</a><span class="k">def</span> <span class="nf">format_number</span><span class="p">(</span><span class="n">number</span><span class="p">):</span>
@@ -220,7 +222,9 @@
<div class="viewcode-block" id="mem_use"><a class="viewcode-back" href="../../../functions.html#binarycpython.utils.functions.mem_use">[docs]</a><span class="k">def</span> <span class="nf">mem_use</span><span class="p">():</span>
<span class="sd">"""</span>
-<span class="sd"> Return current process memory use in MB. (Takes no arguments) Note: this is per-thread only.</span>
+<span class="sd"> Return current process memory use in MB. (Takes no arguments) </span>
+
+<span class="sd"> Note: this is per-thread only.</span>
<span class="sd"> """</span>
<span class="k">return</span> <span class="n">resource</span><span class="o">.</span><span class="n">getrusage</span><span class="p">(</span><span class="n">resource</span><span class="o">.</span><span class="n">RUSAGE_SELF</span><span class="p">)</span><span class="o">.</span><span class="n">ru_maxrss</span> <span class="o">/</span> <span class="mf">1024.0</span></div>
@@ -228,11 +232,19 @@
<div class="viewcode-block" id="trem"><a class="viewcode-back" href="../../../functions.html#binarycpython.utils.functions.trem">[docs]</a><span class="k">def</span> <span class="nf">trem</span><span class="p">(</span><span class="n">dt</span><span class="p">,</span> <span class="n">count</span><span class="p">,</span> <span class="n">dn</span><span class="p">,</span> <span class="n">n</span><span class="p">):</span>
<span class="sd">"""</span>
-<span class="sd"> Estimate time remaining (seconds) given a differential time and count (i.e. progress = $count/$n). $dt is the time since the last call, $count is the current progress count, $dn is the number run since the last call, and $n is the total number required.</span>
+<span class="sd"> Estimate time remaining (seconds) given a differential time and count (i.e. ``progress = count/n``).</span>
+
+<span class="sd"> Args:</span>
+<span class="sd"> dt: is the time since the last call.</span>
+<span class="sd"> count: is the current progress count.</span>
+<span class="sd"> dn: is the number run since the last call.</span>
+<span class="sd"> n: is the total number required.</span>
<span class="sd"> """</span>
+
<span class="n">tpr</span> <span class="o">=</span> <span class="n">dt</span> <span class="o">/</span> <span class="nb">max</span><span class="p">(</span><span class="mi">1</span><span class="p">,</span> <span class="n">dn</span><span class="p">)</span>
<span class="n">etasecs</span> <span class="o">=</span> <span class="n">tpr</span> <span class="o">*</span> <span class="p">(</span><span class="n">n</span> <span class="o">-</span> <span class="n">count</span><span class="p">)</span>
<span class="p">(</span><span class="n">eta</span><span class="p">,</span> <span class="n">units</span><span class="p">)</span> <span class="o">=</span> <span class="n">conv_time_units</span><span class="p">(</span><span class="n">etasecs</span><span class="p">)</span>
+
<span class="k">return</span> <span class="p">(</span><span class="n">eta</span><span class="p">,</span> <span class="n">units</span><span class="p">,</span> <span class="n">tpr</span><span class="p">,</span> <span class="n">etasecs</span><span class="p">)</span></div>
@@ -253,9 +265,16 @@
<div class="viewcode-block" id="bin_data"><a class="viewcode-back" href="../../../functions.html#binarycpython.utils.functions.bin_data">[docs]</a><span class="k">def</span> <span class="nf">bin_data</span><span class="p">(</span><span class="n">value</span><span class="p">,</span> <span class="n">binwidth</span><span class="p">):</span>
<span class="sd">"""</span>
-<span class="sd"> Function that bins the data</span>
+<span class="sd"> Function that bins the data using the absolute value of binwidth using the following formula::</span>
+
+<span class="sd"> ((0.5 if value > 0.0 else -0.5) + int(value / abs(binwidth))) * abs(binwidth)</span>
+
+<span class="sd"> Args:</span>
+<span class="sd"> value: value that we want to bin</span>
+<span class="sd"> binwidth: width of the binning</span>
-<span class="sd"> Uses the absolute value of binwidth</span>
+<span class="sd"> Returns:</span>
+<span class="sd"> binned value</span>
<span class="sd"> """</span>
<span class="k">return</span> <span class="p">((</span><span class="mf">0.5</span> <span class="k">if</span> <span class="n">value</span> <span class="o">></span> <span class="mf">0.0</span> <span class="k">else</span> <span class="o">-</span><span class="mf">0.5</span><span class="p">)</span> <span class="o">+</span> <span class="nb">int</span><span class="p">(</span><span class="n">value</span> <span class="o">/</span> <span class="nb">abs</span><span class="p">(</span><span class="n">binwidth</span><span class="p">)))</span> <span class="o">*</span> <span class="nb">abs</span><span class="p">(</span><span class="n">binwidth</span><span class="p">)</span></div>
@@ -287,6 +306,7 @@
<span class="n">obj_id</span> <span class="o">=</span> <span class="nb">id</span><span class="p">(</span><span class="n">obj</span><span class="p">)</span>
<span class="k">if</span> <span class="n">obj_id</span> <span class="ow">in</span> <span class="n">seen</span><span class="p">:</span>
<span class="k">return</span> <span class="mi">0</span>
+
<span class="c1"># Important mark as seen *before* entering recursion to gracefully handle</span>
<span class="c1"># self-referential objects</span>
<span class="n">seen</span><span class="o">.</span><span class="n">add</span><span class="p">(</span><span class="n">obj_id</span><span class="p">)</span>
@@ -310,20 +330,26 @@
<span class="k">yield</span> <span class="n">val</span><span class="o">.</span><span class="vm">__name__</span></div>
-<div class="viewcode-block" id="isfloat"><a class="viewcode-back" href="../../../functions.html#binarycpython.utils.functions.isfloat">[docs]</a><span class="k">def</span> <span class="nf">isfloat</span><span class="p">(</span><span class="n">x</span><span class="p">):</span>
+<div class="viewcode-block" id="isfloat"><a class="viewcode-back" href="../../../functions.html#binarycpython.utils.functions.isfloat">[docs]</a><span class="k">def</span> <span class="nf">isfloat</span><span class="p">(</span><span class="n">x</span><span class="p">:</span> <span class="n">Union</span><span class="p">[</span><span class="nb">str</span><span class="p">,</span> <span class="nb">float</span><span class="p">,</span> <span class="nb">int</span><span class="p">]):</span>
<span class="sd">"""</span>
-<span class="sd"> Return True if the "number" x, which could be a string, is a float, otherwise return False.</span>
+<span class="sd"> Function to return `True` if the "number" x, which could be a string, is an float, otherwise return `False`.</span>
+
+<span class="sd"> Args:</span>
+<span class="sd"> x: string float or int that we will attempt to convert to an `float` value.</span>
<span class="sd"> """</span>
+
<span class="k">try</span><span class="p">:</span>
<span class="n">_</span> <span class="o">=</span> <span class="nb">float</span><span class="p">(</span><span class="n">x</span><span class="p">)</span>
<span class="k">return</span> <span class="kc">True</span>
<span class="k">except</span> <span class="ne">ValueError</span><span class="p">:</span>
<span class="k">return</span> <span class="kc">False</span></div>
-
-<div class="viewcode-block" id="isint"><a class="viewcode-back" href="../../../functions.html#binarycpython.utils.functions.isint">[docs]</a><span class="k">def</span> <span class="nf">isint</span><span class="p">(</span><span class="n">x</span><span class="p">):</span>
+<div class="viewcode-block" id="isint"><a class="viewcode-back" href="../../../functions.html#binarycpython.utils.functions.isint">[docs]</a><span class="k">def</span> <span class="nf">isint</span><span class="p">(</span><span class="n">x</span><span class="p">:</span> <span class="n">Union</span><span class="p">[</span><span class="nb">str</span><span class="p">,</span> <span class="nb">float</span><span class="p">,</span> <span class="nb">int</span><span class="p">]):</span>
<span class="sd">"""</span>
-<span class="sd"> Return True if the "number" x, which could be a string, is an int, otherwise return False.</span>
+<span class="sd"> Function to return `True` if the "number" x, which could be a string, is an int, otherwise return `False`.</span>
+
+<span class="sd"> Args:</span>
+<span class="sd"> x: string float or int that we will attempt to convert to an `int` value.</span>
<span class="sd"> """</span>
<span class="k">try</span><span class="p">:</span>
@@ -348,11 +374,13 @@
<div class="viewcode-block" id="datalinedict"><a class="viewcode-back" href="../../../functions.html#binarycpython.utils.functions.datalinedict">[docs]</a><span class="k">def</span> <span class="nf">datalinedict</span><span class="p">(</span><span class="n">line</span><span class="p">:</span> <span class="nb">str</span><span class="p">,</span> <span class="n">parameters</span><span class="p">:</span> <span class="nb">list</span><span class="p">):</span>
<span class="sd">"""</span>
<span class="sd"> Convert a line of data to a more convenient dictionary.</span>
+
<span class="sd"> Arguments:</span>
<span class="sd"> line = a line of data as a string</span>
<span class="sd"> parameters = a list of the parameter names</span>
-<span class="sd"> Note: if the parameter is a floating point number, it will be converted to Python's float type.</span>
+<span class="sd"> Note:</span>
+<span class="sd"> If the parameter is a floating point number, it will be converted to Python's float type.</span>
<span class="sd"> """</span>
<span class="k">return</span> <span class="p">{</span><span class="n">param</span><span class="p">:</span> <span class="n">convfloat</span><span class="p">(</span><span class="n">value</span><span class="p">)</span> <span class="k">for</span> <span class="n">param</span><span class="p">,</span> <span class="n">value</span> <span class="ow">in</span> <span class="nb">zip</span><span class="p">(</span><span class="n">parameters</span><span class="p">,</span> <span class="n">line</span><span class="o">.</span><span class="n">split</span><span class="p">())}</span></div>
@@ -361,6 +389,10 @@
<div class="viewcode-block" id="pad_output_distribution"><a class="viewcode-back" href="../../../functions.html#binarycpython.utils.functions.pad_output_distribution">[docs]</a><span class="k">def</span> <span class="nf">pad_output_distribution</span><span class="p">(</span><span class="n">dist</span><span class="p">:</span> <span class="nb">dict</span><span class="p">,</span> <span class="n">binwidth</span><span class="p">:</span> <span class="nb">float</span><span class="p">):</span>
<span class="sd">"""</span>
<span class="sd"> Given a distribution, dist (a dictionary), which should be binned every binwidth (float), fill the distribution with zeros when there is no data. Note: this changes the data in place.</span>
+
+<span class="sd"> Args:</span>
+<span class="sd"> dist: dictionary containing the distribution data.</span>
+<span class="sd"> binwidth: binwidth that is used to fill the distribution with 0 in places where there is no value/key.</span>
<span class="sd"> """</span>
<span class="c1"># sorted list of the keys</span>
@@ -428,11 +460,11 @@
<span class="sd">"""</span>
<span class="sd"> Function to interface with the binary_c config file</span>
-<span class="sd"> input:</span>
-<span class="sd"> - argument: argument for the binary_c config</span>
+<span class="sd"> Args:</span>
+<span class="sd"> argument: argument for the binary_c config</span>
<span class="sd"> Returns:</span>
-<span class="sd"> - raw output of binary_c-config</span>
+<span class="sd"> raw output of binary_c-config</span>
<span class="sd"> """</span>
<span class="n">BINARY_C_DIR</span> <span class="o">=</span> <span class="n">os</span><span class="o">.</span><span class="n">getenv</span><span class="p">(</span><span class="s2">"BINARY_C"</span><span class="p">,</span> <span class="kc">None</span><span class="p">)</span>
@@ -456,21 +488,18 @@
<span class="c1"># utility functions</span>
<span class="c1">########################################################</span>
-
<div class="viewcode-block" id="verbose_print"><a class="viewcode-back" href="../../../functions.html#binarycpython.utils.functions.verbose_print">[docs]</a><span class="k">def</span> <span class="nf">verbose_print</span><span class="p">(</span>
<span class="n">message</span><span class="p">:</span> <span class="nb">str</span><span class="p">,</span> <span class="n">verbosity</span><span class="p">:</span> <span class="nb">int</span><span class="p">,</span> <span class="n">minimal_verbosity</span><span class="p">:</span> <span class="nb">int</span><span class="p">,</span> <span class="n">newline</span><span class="p">:</span> <span class="nb">str</span> <span class="o">=</span> <span class="s2">"</span><span class="se">\n</span><span class="s2">"</span>
<span class="p">)</span> <span class="o">-></span> <span class="kc">None</span><span class="p">:</span>
<span class="sd">"""</span>
<span class="sd"> Function that decides whether to print a message based on the current verbosity</span>
-<span class="sd"> and its minimum verbosity</span>
-
-<span class="sd"> if verbosity is equal or higher than the minimum, then we print</span>
+<span class="sd"> and its minimum verbosity. If verbosity is equal or higher than the minimum, then we print.</span>
<span class="sd"> Args:</span>
-<span class="sd"> message: message to print</span>
-<span class="sd"> verbosity: current verbosity level</span>
-<span class="sd"> minimal_verbosity: threshold verbosity above which to print</span>
-<span class="sd"> newline: newline character (or set of characters), defaults to "\n" but "\x0d" (carriage return) might be useful.</span>
+<span class="sd"> message: message to print.</span>
+<span class="sd"> verbosity: current verbosity level.</span>
+<span class="sd"> minimal_verbosity: threshold verbosity above which to print.</span>
+<span class="sd"> newline: newline character (or set of characters), defaults to ``\\n`` but ``\\x0d`` (carriage return) might be useful.</span>
<span class="sd"> """</span>
<span class="k">if</span> <span class="n">verbosity</span> <span class="o">>=</span> <span class="n">minimal_verbosity</span><span class="p">:</span>
@@ -522,14 +551,14 @@
<span class="k">return</span> <span class="n">psutil</span><span class="o">.</span><span class="n">Process</span><span class="p">()</span><span class="o">.</span><span class="n">username</span><span class="p">()</span></div>
-<div class="viewcode-block" id="temp_dir"><a class="viewcode-back" href="../../../functions.html#binarycpython.utils.functions.temp_dir">[docs]</a><span class="k">def</span> <span class="nf">temp_dir</span><span class="p">(</span><span class="o">*</span><span class="n">args</span><span class="p">:</span> <span class="nb">str</span><span class="p">)</span> <span class="o">-></span> <span class="nb">str</span><span class="p">:</span>
+<div class="viewcode-block" id="temp_dir"><a class="viewcode-back" href="../../../functions.html#binarycpython.utils.functions.temp_dir">[docs]</a><span class="k">def</span> <span class="nf">temp_dir</span><span class="p">(</span><span class="o">*</span><span class="n">child_dirs</span><span class="p">:</span> <span class="nb">str</span><span class="p">)</span> <span class="o">-></span> <span class="nb">str</span><span class="p">:</span>
<span class="sd">"""</span>
-<span class="sd"> Function to create directory within the TMP directory of the file system</span>
+<span class="sd"> Function to create directory within the TMP directory of the file system, starting with `/<TMP>/binary_c_python-<username>`</span>
<span class="sd"> Makes use of os.makedirs exist_ok which requires python 3.2+</span>
<span class="sd"> Args:</span>
-<span class="sd"> function arguments: str input where each next input will be a child of the previous full_path. e.g. temp_dir('tests', 'grid') will become '/tmp/binary_c_python/tests/grid'</span>
+<span class="sd"> *child_dirs: str input where each next input will be a child of the previous full_path. e.g. ``temp_dir('tests', 'grid')`` will become ``'/tmp/binary_c_python-<username>/tests/grid'``</span>
<span class="sd"> Returns:</span>
<span class="sd"> the path of a sub directory called binary_c_python in the TMP of the file system</span>
@@ -540,8 +569,8 @@
<span class="n">path</span> <span class="o">=</span> <span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">join</span><span class="p">(</span><span class="n">tmp_dir</span><span class="p">,</span> <span class="s2">"binary_c_python-</span><span class="si">{}</span><span class="s2">"</span><span class="o">.</span><span class="n">format</span><span class="p">(</span><span class="n">username</span><span class="p">))</span>
<span class="c1"># loop over the other paths if there are any:</span>
- <span class="k">if</span> <span class="n">args</span><span class="p">:</span>
- <span class="k">for</span> <span class="n">extra_dir</span> <span class="ow">in</span> <span class="n">args</span><span class="p">:</span>
+ <span class="k">if</span> <span class="n">child_dirs</span><span class="p">:</span>
+ <span class="k">for</span> <span class="n">extra_dir</span> <span class="ow">in</span> <span class="n">child_dirs</span><span class="p">:</span>
<span class="n">path</span> <span class="o">=</span> <span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">join</span><span class="p">(</span><span class="n">path</span><span class="p">,</span> <span class="n">extra_dir</span><span class="p">)</span>
<span class="c1">#</span>
@@ -829,7 +858,7 @@
<span class="sd"> Will check whether it is a valid parameter.</span>
-<span class="sd"> Binary_c will output things in the following order;</span>
+<span class="sd"> Binary_c will output things in the following order:</span>
<span class="sd"> - Did you mean?</span>
<span class="sd"> - binary_c help for variable</span>
<span class="sd"> - default</span>
@@ -845,8 +874,8 @@
<span class="sd"> parameter isn't valid</span>
<span class="sd"> Returns:</span>
-<span class="sd"> Dictionary containing the help info. This dictionary contains 'parameter_name',</span>
-<span class="sd"> 'parameter_value_input_type', 'description', optionally 'macros'</span>
+<span class="sd"> Dictionary containing the help info. This dictionary contains `parameter_name`,</span>
+<span class="sd"> `parameter_value_input_type`, `description`, optionally `macros`</span>
<span class="sd"> """</span>
<span class="n">available_arg_keys</span> <span class="o">=</span> <span class="n">get_arg_keys</span><span class="p">()</span>
@@ -1170,7 +1199,7 @@
<span class="n">argdict</span> <span class="o">=</span> <span class="n">arguments_dict</span><span class="p">[</span><span class="n">el</span><span class="p">][</span><span class="s2">"parameters"</span><span class="p">][</span><span class="n">arg</span><span class="p">]</span>
<span class="nb">print</span><span class="p">(</span><span class="s2">"| **Parameter**: </span><span class="si">{}</span><span class="s2">"</span><span class="o">.</span><span class="n">format</span><span class="p">(</span><span class="n">argdict</span><span class="p">[</span><span class="s2">"param_name"</span><span class="p">]),</span> <span class="n">file</span><span class="o">=</span><span class="n">f</span><span class="p">)</span>
- <span class="nb">print</span><span class="p">(</span><span class="s2">"| **Description**: </span><span class="si">{}</span><span class="s2">"</span><span class="o">.</span><span class="n">format</span><span class="p">(</span><span class="n">argdict</span><span class="p">[</span><span class="s2">"description"</span><span class="p">]),</span> <span class="n">file</span><span class="o">=</span><span class="n">f</span><span class="p">)</span>
+ <span class="nb">print</span><span class="p">(</span><span class="s2">"| **Description**: </span><span class="si">{}</span><span class="s2">"</span><span class="o">.</span><span class="n">format</span><span class="p">(</span><span class="n">argdict</span><span class="p">[</span><span class="s2">"description"</span><span class="p">]</span><span class="o">.</span><span class="n">replace</span><span class="p">(</span><span class="s2">"|Rout/Rin-1|"</span><span class="p">,</span> <span class="s2">"abs(Rout/Rin-1)"</span><span class="p">)),</span> <span class="n">file</span><span class="o">=</span><span class="n">f</span><span class="p">)</span>
<span class="k">if</span> <span class="s2">"parameter_value_input_type"</span> <span class="ow">in</span> <span class="n">argdict</span><span class="p">:</span>
<span class="nb">print</span><span class="p">(</span>
<span class="s2">"| **Parameter input type**: </span><span class="si">{}</span><span class="s2">"</span><span class="o">.</span><span class="n">format</span><span class="p">(</span>
@@ -1258,9 +1287,9 @@
provided by <a href="https://readthedocs.org">Read the Docs</a>.
<br><br>
-Generated on binarycpython git branch: development_0.9.3/2.2.1 git revision 8f3ed88f14c91d76a1fccf71294de4f0e9a160fd url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c-python/-/tree/development_0.9.3/2.2.1">git url</a>.
+Generated on binarycpython git branch: development_0.9.3/2.2.1 git revision 6c50cae388f9d9326bbb687ca0ecdc2df766f7f5 url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c-python/-/tree/development_0.9.3/2.2.1">git url</a>.
<br><br>
-Using binary_c with bit branch branch_david: git revision: "5834:20211216:a3146490e" url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c/-/tree/branch_david">git url</a>.
+Using binary_c with bit branch branch_david: git revision: "5845:20220107:201620bd7" url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c/-/tree/branch_david">git url</a>.
diff --git a/docs/build/html/_modules/binarycpython/utils/grid.html b/docs/build/html/_modules/binarycpython/utils/grid.html
index fc35e6370..ce8a80180 100644
--- a/docs/build/html/_modules/binarycpython/utils/grid.html
+++ b/docs/build/html/_modules/binarycpython/utils/grid.html
@@ -2469,9 +2469,9 @@
provided by <a href="https://readthedocs.org">Read the Docs</a>.
<br><br>
-Generated on binarycpython git branch: development_0.9.3/2.2.1 git revision 8f3ed88f14c91d76a1fccf71294de4f0e9a160fd url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c-python/-/tree/development_0.9.3/2.2.1">git url</a>.
+Generated on binarycpython git branch: development_0.9.3/2.2.1 git revision 6c50cae388f9d9326bbb687ca0ecdc2df766f7f5 url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c-python/-/tree/development_0.9.3/2.2.1">git url</a>.
<br><br>
-Using binary_c with bit branch branch_david: git revision: "5834:20211216:a3146490e" url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c/-/tree/branch_david">git url</a>.
+Using binary_c with bit branch branch_david: git revision: "5845:20220107:201620bd7" url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c/-/tree/branch_david">git url</a>.
diff --git a/docs/build/html/_modules/binarycpython/utils/plot_functions.html b/docs/build/html/_modules/binarycpython/utils/plot_functions.html
index 136a38483..08e818327 100644
--- a/docs/build/html/_modules/binarycpython/utils/plot_functions.html
+++ b/docs/build/html/_modules/binarycpython/utils/plot_functions.html
@@ -713,9 +713,9 @@
provided by <a href="https://readthedocs.org">Read the Docs</a>.
<br><br>
-Generated on binarycpython git branch: development_0.9.3/2.2.1 git revision 8f3ed88f14c91d76a1fccf71294de4f0e9a160fd url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c-python/-/tree/development_0.9.3/2.2.1">git url</a>.
+Generated on binarycpython git branch: development_0.9.3/2.2.1 git revision 6c50cae388f9d9326bbb687ca0ecdc2df766f7f5 url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c-python/-/tree/development_0.9.3/2.2.1">git url</a>.
<br><br>
-Using binary_c with bit branch branch_david: git revision: "5834:20211216:a3146490e" url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c/-/tree/branch_david">git url</a>.
+Using binary_c with bit branch branch_david: git revision: "5845:20220107:201620bd7" url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c/-/tree/branch_david">git url</a>.
diff --git a/docs/build/html/_modules/binarycpython/utils/population_extensions/HPC.html b/docs/build/html/_modules/binarycpython/utils/population_extensions/HPC.html
index c8b141b2b..120d627ca 100644
--- a/docs/build/html/_modules/binarycpython/utils/population_extensions/HPC.html
+++ b/docs/build/html/_modules/binarycpython/utils/population_extensions/HPC.html
@@ -802,9 +802,9 @@
provided by <a href="https://readthedocs.org">Read the Docs</a>.
<br><br>
-Generated on binarycpython git branch: development_0.9.3/2.2.1 git revision 8f3ed88f14c91d76a1fccf71294de4f0e9a160fd url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c-python/-/tree/development_0.9.3/2.2.1">git url</a>.
+Generated on binarycpython git branch: development_0.9.3/2.2.1 git revision 6c50cae388f9d9326bbb687ca0ecdc2df766f7f5 url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c-python/-/tree/development_0.9.3/2.2.1">git url</a>.
<br><br>
-Using binary_c with bit branch branch_david: git revision: "5834:20211216:a3146490e" url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c/-/tree/branch_david">git url</a>.
+Using binary_c with bit branch branch_david: git revision: "5845:20220107:201620bd7" url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c/-/tree/branch_david">git url</a>.
diff --git a/docs/build/html/_modules/binarycpython/utils/population_extensions/Moe_di_Stefano_2017.html b/docs/build/html/_modules/binarycpython/utils/population_extensions/Moe_di_Stefano_2017.html
new file mode 100644
index 000000000..20f678f30
--- /dev/null
+++ b/docs/build/html/_modules/binarycpython/utils/population_extensions/Moe_di_Stefano_2017.html
@@ -0,0 +1,1338 @@
+<!DOCTYPE html>
+<html class="writer-html5" lang="en" >
+<head>
+ <meta charset="utf-8" />
+ <meta name="viewport" content="width=device-width, initial-scale=1.0" />
+ <title>binarycpython.utils.population_extensions.Moe_di_Stefano_2017 — binary_c-python documentation</title>
+ <link rel="stylesheet" href="../../../../_static/pygments.css" type="text/css" />
+ <link rel="stylesheet" href="../../../../_static/css/theme.css" type="text/css" />
+ <!--[if lt IE 9]>
+ <script src="../../../../_static/js/html5shiv.min.js"></script>
+ <![endif]-->
+
+ <script data-url_root="../../../../" id="documentation_options" src="../../../../_static/documentation_options.js"></script>
+ <script src="../../../../_static/jquery.js"></script>
+ <script src="../../../../_static/underscore.js"></script>
+ <script src="../../../../_static/doctools.js"></script>
+ <script crossorigin="anonymous" integrity="sha256-Ae2Vz/4ePdIu6ZyI/5ZGsYnb+m0JlOmKPjt6XZ9JJkA=" src="https://cdnjs.cloudflare.com/ajax/libs/require.js/2.3.4/require.min.js"></script>
+ <script src="../../../../_static/js/theme.js"></script>
+ <link rel="index" title="Index" href="../../../../genindex.html" />
+ <link rel="search" title="Search" href="../../../../search.html" />
+</head>
+
+<body class="wy-body-for-nav">
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+ <input type="text" name="q" placeholder="Search docs" />
+ <input type="hidden" name="check_keywords" value="yes" />
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+</div>
+ </div><div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="Navigation menu">
+ <p class="caption" role="heading"><span class="caption-text">Contents:</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../../../../readme_link.html">Python module for binary_c</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../../../modules.html">Binarycpython code</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../../../example_notebooks.html">Example notebooks</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../../../binary_c_parameters.html">Binary_c parameters</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../../../grid_options_descriptions.html">Population grid code options</a></li>
+<li class="toctree-l1"><a class="reference external" href="https://gitlab.eps.surrey.ac.uk/ri0005/binary_c-python">Visit the GitLab repo</a></li>
+<li class="toctree-l1"><a class="reference external" href="https://gitlab.eps.surrey.ac.uk/ri0005/binary_c-python/-/issues/new">Submit an issue</a></li>
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+ <div itemprop="articleBody">
+
+ <h1>Source code for binarycpython.utils.population_extensions.Moe_di_Stefano_2017</h1><div class="highlight"><pre>
+<span></span><span class="sd">"""</span>
+<span class="sd">Module containing the functions to handle the Moe&Distrefano data</span>
+
+<span class="sd">This class object is an extension to the population grid object</span>
+<span class="sd">"""</span>
+
+<span class="c1"># pylint: disable=E1101</span>
+
+<span class="kn">import</span> <span class="nn">os</span>
+<span class="kn">import</span> <span class="nn">gc</span>
+<span class="kn">import</span> <span class="nn">copy</span>
+<span class="kn">import</span> <span class="nn">json</span>
+
+<span class="kn">import</span> <span class="nn">py_rinterpolate</span>
+
+<span class="kn">from</span> <span class="nn">binarycpython.utils.functions</span> <span class="kn">import</span> <span class="p">(</span>
+ <span class="n">verbose_print</span><span class="p">,</span>
+<span class="p">)</span>
+<span class="kn">from</span> <span class="nn">binarycpython.utils.dicts</span> <span class="kn">import</span> <span class="n">update_dicts</span><span class="p">,</span> <span class="n">normalize_dict</span>
+<span class="kn">from</span> <span class="nn">binarycpython.utils.population_extensions.distribution_functions</span> <span class="kn">import</span> <span class="p">(</span>
+ <span class="n">Moecache</span><span class="p">,</span>
+ <span class="n">LOG_LN_CONVERTER</span><span class="p">,</span>
+<span class="p">)</span>
+<span class="kn">from</span> <span class="nn">binarycpython.utils.population_extensions.grid_options_defaults</span> <span class="kn">import</span> <span class="p">(</span>
+ <span class="n">_MOE2017_VERBOSITY_LEVEL</span><span class="p">,</span>
+<span class="p">)</span>
+<span class="kn">from</span> <span class="nn">binarycpython.utils</span> <span class="kn">import</span> <span class="n">moe_di_stefano_2017_data</span>
+
+
+
+<div class="viewcode-block" id="Moe_di_Stefano_2017"><a class="viewcode-back" href="../../../../population_extensions/Moe_di_Stefano_2017.html#binarycpython.utils.population_extensions.Moe_di_Stefano_2017.Moe_di_Stefano_2017">[docs]</a><span class="k">class</span> <span class="nc">Moe_di_Stefano_2017</span><span class="p">:</span>
+ <span class="sd">"""</span>
+<span class="sd"> Extension to the population grid object that contains functionality to handle handle the Moe & distefano distributions</span>
+<span class="sd"> """</span>
+
+ <span class="k">def</span> <span class="fm">__init__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">):</span>
+ <span class="sd">"""</span>
+<span class="sd"> Init function for the Moe_di_Stefano_2017 class</span>
+<span class="sd"> """</span>
+
+ <span class="k">return</span>
+
+<div class="viewcode-block" id="Moe_di_Stefano_2017.set_moe_di_stefano_settings"><a class="viewcode-back" href="../../../../population_extensions/Moe_di_Stefano_2017.html#binarycpython.utils.population_extensions.Moe_di_Stefano_2017.Moe_di_Stefano_2017.set_moe_di_stefano_settings">[docs]</a> <span class="k">def</span> <span class="nf">set_moe_di_stefano_settings</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">options</span><span class="o">=</span><span class="kc">None</span><span class="p">):</span>
+ <span class="sd">"""</span>
+<span class="sd"> Function to set user input configurations for the Moe & di Stefano methods</span>
+
+<span class="sd"> If nothing is passed then we just use the default options</span>
+<span class="sd"> """</span>
+
+ <span class="k">if</span> <span class="ow">not</span> <span class="n">options</span><span class="p">:</span>
+ <span class="n">options</span> <span class="o">=</span> <span class="p">{}</span>
+
+ <span class="c1"># Take the option dictionary that was given and override.</span>
+ <span class="n">options</span> <span class="o">=</span> <span class="n">update_dicts</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">grid_options</span><span class="p">[</span><span class="s2">"Moe2017_options"</span><span class="p">],</span> <span class="n">options</span><span class="p">)</span>
+ <span class="bp">self</span><span class="o">.</span><span class="n">grid_options</span><span class="p">[</span><span class="s2">"Moe2017_options"</span><span class="p">]</span> <span class="o">=</span> <span class="n">copy</span><span class="o">.</span><span class="n">deepcopy</span><span class="p">(</span><span class="n">options</span><span class="p">)</span>
+
+ <span class="c1"># Write options to a file</span>
+ <span class="n">os</span><span class="o">.</span><span class="n">makedirs</span><span class="p">(</span>
+ <span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">join</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">grid_options</span><span class="p">[</span><span class="s2">"tmp_dir"</span><span class="p">],</span> <span class="s2">"moe_distefano"</span><span class="p">),</span>
+ <span class="n">exist_ok</span><span class="o">=</span><span class="kc">True</span><span class="p">,</span>
+ <span class="p">)</span>
+ <span class="k">with</span> <span class="nb">open</span><span class="p">(</span>
+ <span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">join</span><span class="p">(</span>
+ <span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">join</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">grid_options</span><span class="p">[</span><span class="s2">"tmp_dir"</span><span class="p">],</span> <span class="s2">"moe_distefano"</span><span class="p">),</span>
+ <span class="s2">"moeopts.dat"</span><span class="p">,</span>
+ <span class="p">),</span>
+ <span class="s2">"w"</span><span class="p">,</span>
+ <span class="n">encoding</span><span class="o">=</span><span class="s2">"utf-8"</span><span class="p">,</span>
+ <span class="p">)</span> <span class="k">as</span> <span class="n">f</span><span class="p">:</span>
+ <span class="n">f</span><span class="o">.</span><span class="n">write</span><span class="p">(</span>
+ <span class="n">json</span><span class="o">.</span><span class="n">dumps</span><span class="p">(</span>
+ <span class="bp">self</span><span class="o">.</span><span class="n">grid_options</span><span class="p">[</span><span class="s2">"Moe2017_options"</span><span class="p">],</span> <span class="n">indent</span><span class="o">=</span><span class="mi">4</span><span class="p">,</span> <span class="n">ensure_ascii</span><span class="o">=</span><span class="kc">False</span>
+ <span class="p">)</span>
+ <span class="p">)</span>
+ <span class="n">f</span><span class="o">.</span><span class="n">close</span><span class="p">()</span></div>
+
+ <span class="k">def</span> <span class="nf">_load_moe_di_stefano_data</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
+ <span class="sd">"""</span>
+<span class="sd"> Function to load the moe & di stefano data</span>
+<span class="sd"> """</span>
+
+ <span class="c1"># Only if the grid is loaded and Moecache contains information</span>
+ <span class="k">if</span> <span class="ow">not</span> <span class="bp">self</span><span class="o">.</span><span class="n">grid_options</span><span class="p">[</span><span class="s2">"_loaded_Moe2017_data"</span><span class="p">]:</span> <span class="c1"># and not Moecache:</span>
+
+ <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">grid_options</span><span class="p">[</span><span class="s2">"_Moe2017_JSON_data"</span><span class="p">]:</span>
+ <span class="c1"># Use the existing (perhaps modified) JSON data</span>
+ <span class="n">json_data</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">grid_options</span><span class="p">[</span><span class="s2">"_Moe2017_JSON_data"</span><span class="p">]</span>
+
+ <span class="k">else</span><span class="p">:</span>
+ <span class="c1"># Load the JSON data from a file</span>
+ <span class="n">json_data</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">get_moe_di_stefano_dataset</span><span class="p">(</span>
+ <span class="bp">self</span><span class="o">.</span><span class="n">grid_options</span><span class="p">[</span><span class="s2">"Moe2017_options"</span><span class="p">],</span>
+ <span class="n">verbosity</span><span class="o">=</span><span class="bp">self</span><span class="o">.</span><span class="n">grid_options</span><span class="p">[</span><span class="s2">"verbosity"</span><span class="p">],</span>
+ <span class="p">)</span>
+
+ <span class="c1"># entry of log10M1 is a list containing 1 dict.</span>
+ <span class="c1"># We can take the dict out of the list</span>
+ <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">json_data</span><span class="p">[</span><span class="s2">"log10M1"</span><span class="p">],</span> <span class="nb">list</span><span class="p">):</span>
+ <span class="n">json_data</span><span class="p">[</span><span class="s2">"log10M1"</span><span class="p">]</span> <span class="o">=</span> <span class="n">json_data</span><span class="p">[</span><span class="s2">"log10M1"</span><span class="p">][</span><span class="mi">0</span><span class="p">]</span>
+
+ <span class="c1"># save this data in case we want to modify it later</span>
+ <span class="bp">self</span><span class="o">.</span><span class="n">grid_options</span><span class="p">[</span><span class="s2">"_Moe2017_JSON_data"</span><span class="p">]</span> <span class="o">=</span> <span class="n">json_data</span>
+
+ <span class="c1"># Get all the masses</span>
+ <span class="n">logmasses</span> <span class="o">=</span> <span class="nb">sorted</span><span class="p">(</span><span class="n">json_data</span><span class="p">[</span><span class="s2">"log10M1"</span><span class="p">]</span><span class="o">.</span><span class="n">keys</span><span class="p">())</span>
+ <span class="k">if</span> <span class="ow">not</span> <span class="n">logmasses</span><span class="p">:</span>
+ <span class="n">msg</span> <span class="o">=</span> <span class="s2">"The table does not contain masses."</span>
+ <span class="n">verbose_print</span><span class="p">(</span>
+ <span class="s2">"</span><span class="se">\t</span><span class="s2">Moe_di_Stefano_2017: </span><span class="si">{}</span><span class="s2">"</span><span class="o">.</span><span class="n">format</span><span class="p">(</span><span class="n">msg</span><span class="p">),</span>
+ <span class="bp">self</span><span class="o">.</span><span class="n">grid_options</span><span class="p">[</span><span class="s2">"verbosity"</span><span class="p">],</span>
+ <span class="mi">0</span><span class="p">,</span>
+ <span class="p">)</span>
+ <span class="k">raise</span> <span class="ne">ValueError</span><span class="p">(</span><span class="n">msg</span><span class="p">)</span>
+
+ <span class="c1"># Write to file</span>
+ <span class="n">os</span><span class="o">.</span><span class="n">makedirs</span><span class="p">(</span>
+ <span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">join</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">grid_options</span><span class="p">[</span><span class="s2">"tmp_dir"</span><span class="p">],</span> <span class="s2">"moe_distefano"</span><span class="p">),</span>
+ <span class="n">exist_ok</span><span class="o">=</span><span class="kc">True</span><span class="p">,</span>
+ <span class="p">)</span>
+ <span class="k">with</span> <span class="nb">open</span><span class="p">(</span>
+ <span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">join</span><span class="p">(</span>
+ <span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">join</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">grid_options</span><span class="p">[</span><span class="s2">"tmp_dir"</span><span class="p">],</span> <span class="s2">"moe_distefano"</span><span class="p">),</span>
+ <span class="s2">"moe.log"</span><span class="p">,</span>
+ <span class="p">),</span>
+ <span class="s2">"w"</span><span class="p">,</span>
+ <span class="n">encoding</span><span class="o">=</span><span class="s2">"utf-8"</span><span class="p">,</span>
+ <span class="p">)</span> <span class="k">as</span> <span class="n">logfile</span><span class="p">:</span>
+ <span class="n">logfile</span><span class="o">.</span><span class="n">write</span><span class="p">(</span><span class="s2">"logâ‚â‚€Masses(M☉) </span><span class="si">{}</span><span class="se">\n</span><span class="s2">"</span><span class="o">.</span><span class="n">format</span><span class="p">(</span><span class="n">logmasses</span><span class="p">))</span>
+
+ <span class="c1"># Get all the periods and see if they are all consistently present</span>
+ <span class="n">logperiods</span> <span class="o">=</span> <span class="p">[]</span>
+ <span class="k">for</span> <span class="n">logmass</span> <span class="ow">in</span> <span class="n">logmasses</span><span class="p">:</span>
+ <span class="k">if</span> <span class="ow">not</span> <span class="n">logperiods</span><span class="p">:</span>
+ <span class="n">logperiods</span> <span class="o">=</span> <span class="nb">sorted</span><span class="p">(</span><span class="n">json_data</span><span class="p">[</span><span class="s2">"log10M1"</span><span class="p">][</span><span class="n">logmass</span><span class="p">][</span><span class="s2">"logP"</span><span class="p">]</span><span class="o">.</span><span class="n">keys</span><span class="p">())</span>
+ <span class="n">dlog10P</span> <span class="o">=</span> <span class="nb">float</span><span class="p">(</span><span class="n">logperiods</span><span class="p">[</span><span class="mi">1</span><span class="p">])</span> <span class="o">-</span> <span class="nb">float</span><span class="p">(</span><span class="n">logperiods</span><span class="p">[</span><span class="mi">0</span><span class="p">])</span>
+
+ <span class="n">current_logperiods</span> <span class="o">=</span> <span class="nb">sorted</span><span class="p">(</span><span class="n">json_data</span><span class="p">[</span><span class="s2">"log10M1"</span><span class="p">][</span><span class="n">logmass</span><span class="p">][</span><span class="s2">"logP"</span><span class="p">])</span>
+ <span class="k">if</span> <span class="n">logperiods</span> <span class="o">!=</span> <span class="n">current_logperiods</span><span class="p">:</span>
+ <span class="n">msg</span> <span class="o">=</span> <span class="p">(</span>
+ <span class="s2">"Period values are not consistent throughout the dataset logperiods = "</span>
+ <span class="o">+</span> <span class="s2">" "</span><span class="o">.</span><span class="n">join</span><span class="p">(</span><span class="nb">str</span><span class="p">(</span><span class="n">x</span><span class="p">)</span> <span class="k">for</span> <span class="n">x</span> <span class="ow">in</span> <span class="n">logperiods</span><span class="p">)</span>
+ <span class="o">+</span> <span class="s2">"</span><span class="se">\n</span><span class="s2">Current periods = "</span>
+ <span class="o">+</span> <span class="s2">" "</span><span class="o">.</span><span class="n">join</span><span class="p">(</span><span class="nb">str</span><span class="p">(</span><span class="n">x</span><span class="p">)</span> <span class="k">for</span> <span class="n">x</span> <span class="ow">in</span> <span class="n">current_logperiods</span><span class="p">)</span>
+ <span class="p">)</span>
+ <span class="n">verbose_print</span><span class="p">(</span>
+ <span class="s2">"</span><span class="se">\t</span><span class="s2">Moe_di_Stefano_2017: </span><span class="si">{}</span><span class="s2">"</span><span class="o">.</span><span class="n">format</span><span class="p">(</span><span class="n">msg</span><span class="p">),</span>
+ <span class="bp">self</span><span class="o">.</span><span class="n">grid_options</span><span class="p">[</span><span class="s2">"verbosity"</span><span class="p">],</span>
+ <span class="mi">0</span><span class="p">,</span>
+ <span class="p">)</span>
+ <span class="k">raise</span> <span class="ne">ValueError</span><span class="p">(</span><span class="n">msg</span><span class="p">)</span>
+
+ <span class="c1">############################################################</span>
+ <span class="c1"># log10period binwidth : of course this assumes a fixed</span>
+ <span class="c1"># binwidth, so we check for this too.</span>
+ <span class="k">for</span> <span class="n">i</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="nb">len</span><span class="p">(</span><span class="n">current_logperiods</span><span class="p">)</span> <span class="o">-</span> <span class="mi">1</span><span class="p">):</span>
+ <span class="k">if</span> <span class="ow">not</span> <span class="n">dlog10P</span> <span class="o">==</span> <span class="p">(</span>
+ <span class="nb">float</span><span class="p">(</span><span class="n">current_logperiods</span><span class="p">[</span><span class="n">i</span> <span class="o">+</span> <span class="mi">1</span><span class="p">])</span> <span class="o">-</span> <span class="nb">float</span><span class="p">(</span><span class="n">current_logperiods</span><span class="p">[</span><span class="n">i</span><span class="p">])</span>
+ <span class="p">):</span>
+ <span class="n">msg</span> <span class="o">=</span> <span class="s2">"Period spacing is not consistent throughout the dataset"</span>
+ <span class="n">verbose_print</span><span class="p">(</span>
+ <span class="s2">"</span><span class="se">\t</span><span class="s2">Moe_di_Stefano_2017: </span><span class="si">{}</span><span class="s2">"</span><span class="o">.</span><span class="n">format</span><span class="p">(</span><span class="n">msg</span><span class="p">),</span>
+ <span class="bp">self</span><span class="o">.</span><span class="n">grid_options</span><span class="p">[</span><span class="s2">"verbosity"</span><span class="p">],</span>
+ <span class="mi">0</span><span class="p">,</span>
+ <span class="p">)</span>
+ <span class="k">raise</span> <span class="ne">ValueError</span><span class="p">(</span><span class="n">msg</span><span class="p">)</span>
+
+ <span class="c1"># save the logperiods list in the cache:</span>
+ <span class="c1"># this is used in the renormalization integration</span>
+ <span class="n">Moecache</span><span class="p">[</span><span class="s2">"logperiods"</span><span class="p">]</span> <span class="o">=</span> <span class="n">logperiods</span>
+
+ <span class="c1"># Write to file</span>
+ <span class="n">os</span><span class="o">.</span><span class="n">makedirs</span><span class="p">(</span>
+ <span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">join</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">grid_options</span><span class="p">[</span><span class="s2">"tmp_dir"</span><span class="p">],</span> <span class="s2">"moe_distefano"</span><span class="p">),</span>
+ <span class="n">exist_ok</span><span class="o">=</span><span class="kc">True</span><span class="p">,</span>
+ <span class="p">)</span>
+ <span class="k">with</span> <span class="nb">open</span><span class="p">(</span>
+ <span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">join</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">grid_options</span><span class="p">[</span><span class="s2">"tmp_dir"</span><span class="p">],</span> <span class="s2">"moe_distefano"</span><span class="p">,</span> <span class="s2">"moe.log"</span><span class="p">),</span>
+ <span class="s2">"a"</span><span class="p">,</span>
+ <span class="n">encoding</span><span class="o">=</span><span class="s2">"utf-8"</span><span class="p">,</span>
+ <span class="p">)</span> <span class="k">as</span> <span class="n">logfile</span><span class="p">:</span>
+ <span class="n">logfile</span><span class="o">.</span><span class="n">write</span><span class="p">(</span><span class="s2">"logâ‚â‚€Periods(days) </span><span class="si">{}</span><span class="se">\n</span><span class="s2">"</span><span class="o">.</span><span class="n">format</span><span class="p">(</span><span class="n">logperiods</span><span class="p">))</span>
+
+ <span class="c1"># Fill the global dict</span>
+ <span class="k">for</span> <span class="n">logmass</span> <span class="ow">in</span> <span class="n">logmasses</span><span class="p">:</span>
+ <span class="c1"># Create the multiplicity table</span>
+ <span class="k">if</span> <span class="ow">not</span> <span class="n">Moecache</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s2">"multiplicity_table"</span><span class="p">,</span> <span class="kc">None</span><span class="p">):</span>
+ <span class="n">Moecache</span><span class="p">[</span><span class="s2">"multiplicity_table"</span><span class="p">]</span> <span class="o">=</span> <span class="p">[]</span>
+
+ <span class="c1"># multiplicity as a function of primary mass</span>
+ <span class="n">Moecache</span><span class="p">[</span><span class="s2">"multiplicity_table"</span><span class="p">]</span><span class="o">.</span><span class="n">append</span><span class="p">(</span>
+ <span class="p">[</span>
+ <span class="nb">float</span><span class="p">(</span><span class="n">logmass</span><span class="p">),</span>
+ <span class="n">json_data</span><span class="p">[</span><span class="s2">"log10M1"</span><span class="p">][</span><span class="n">logmass</span><span class="p">][</span><span class="s2">"f_multi"</span><span class="p">],</span>
+ <span class="n">json_data</span><span class="p">[</span><span class="s2">"log10M1"</span><span class="p">][</span><span class="n">logmass</span><span class="p">][</span><span class="s2">"single star fraction"</span><span class="p">],</span>
+ <span class="n">json_data</span><span class="p">[</span><span class="s2">"log10M1"</span><span class="p">][</span><span class="n">logmass</span><span class="p">][</span><span class="s2">"binary star fraction"</span><span class="p">],</span>
+ <span class="n">json_data</span><span class="p">[</span><span class="s2">"log10M1"</span><span class="p">][</span><span class="n">logmass</span><span class="p">][</span><span class="s2">"triple/quad star fraction"</span><span class="p">],</span>
+ <span class="p">]</span>
+ <span class="p">)</span>
+
+ <span class="c1">############################################################</span>
+ <span class="c1"># a small log10period which we can shift just outside the</span>
+ <span class="c1"># table to force integration out there to zero</span>
+ <span class="n">epslog10P</span> <span class="o">=</span> <span class="mf">1e-8</span> <span class="o">*</span> <span class="n">dlog10P</span>
+
+ <span class="c1">############################################################</span>
+ <span class="c1"># loop over either binary or triple-outer periods</span>
+ <span class="n">first</span> <span class="o">=</span> <span class="mi">1</span>
+
+ <span class="c1"># Go over the periods</span>
+ <span class="k">for</span> <span class="n">logperiod</span> <span class="ow">in</span> <span class="n">logperiods</span><span class="p">:</span>
+ <span class="c1">############################################################</span>
+ <span class="c1"># distributions of binary and triple star fractions</span>
+ <span class="c1"># as a function of mass, period.</span>
+ <span class="c1">#</span>
+ <span class="c1"># Note: these should be per unit log10P, hence we</span>
+ <span class="c1"># divide by dlog10P</span>
+
+ <span class="k">if</span> <span class="n">first</span><span class="p">:</span>
+ <span class="n">first</span> <span class="o">=</span> <span class="mi">0</span>
+
+ <span class="c1"># Create the multiplicity table</span>
+ <span class="k">if</span> <span class="ow">not</span> <span class="n">Moecache</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s2">"period_distributions"</span><span class="p">,</span> <span class="kc">None</span><span class="p">):</span>
+ <span class="n">Moecache</span><span class="p">[</span><span class="s2">"period_distributions"</span><span class="p">]</span> <span class="o">=</span> <span class="p">[]</span>
+
+ <span class="c1">############################################################</span>
+ <span class="c1"># lower bound the period distributions to zero probability</span>
+ <span class="n">Moecache</span><span class="p">[</span><span class="s2">"period_distributions"</span><span class="p">]</span><span class="o">.</span><span class="n">append</span><span class="p">(</span>
+ <span class="p">[</span>
+ <span class="nb">float</span><span class="p">(</span><span class="n">logmass</span><span class="p">),</span>
+ <span class="nb">float</span><span class="p">(</span><span class="n">logperiod</span><span class="p">)</span> <span class="o">-</span> <span class="mf">0.5</span> <span class="o">*</span> <span class="n">dlog10P</span> <span class="o">-</span> <span class="n">epslog10P</span><span class="p">,</span>
+ <span class="mf">0.0</span><span class="p">,</span>
+ <span class="mf">0.0</span><span class="p">,</span>
+ <span class="p">]</span>
+ <span class="p">)</span>
+ <span class="n">Moecache</span><span class="p">[</span><span class="s2">"period_distributions"</span><span class="p">]</span><span class="o">.</span><span class="n">append</span><span class="p">(</span>
+ <span class="p">[</span>
+ <span class="nb">float</span><span class="p">(</span><span class="n">logmass</span><span class="p">),</span>
+ <span class="nb">float</span><span class="p">(</span><span class="n">logperiod</span><span class="p">)</span> <span class="o">-</span> <span class="mf">0.5</span> <span class="o">*</span> <span class="n">dlog10P</span><span class="p">,</span>
+ <span class="n">json_data</span><span class="p">[</span><span class="s2">"log10M1"</span><span class="p">][</span><span class="n">logmass</span><span class="p">][</span><span class="s2">"logP"</span><span class="p">][</span><span class="n">logperiod</span><span class="p">][</span>
+ <span class="s2">"normed_bin_frac_p_dist"</span>
+ <span class="p">]</span>
+ <span class="o">/</span> <span class="n">dlog10P</span><span class="p">,</span>
+ <span class="n">json_data</span><span class="p">[</span><span class="s2">"log10M1"</span><span class="p">][</span><span class="n">logmass</span><span class="p">][</span><span class="s2">"logP"</span><span class="p">][</span><span class="n">logperiod</span><span class="p">][</span>
+ <span class="s2">"normed_tripquad_frac_p_dist"</span>
+ <span class="p">]</span>
+ <span class="o">/</span> <span class="n">dlog10P</span><span class="p">,</span>
+ <span class="p">]</span>
+ <span class="p">)</span>
+
+ <span class="n">Moecache</span><span class="p">[</span><span class="s2">"period_distributions"</span><span class="p">]</span><span class="o">.</span><span class="n">append</span><span class="p">(</span>
+ <span class="p">[</span>
+ <span class="nb">float</span><span class="p">(</span><span class="n">logmass</span><span class="p">),</span>
+ <span class="nb">float</span><span class="p">(</span><span class="n">logperiod</span><span class="p">),</span>
+ <span class="n">json_data</span><span class="p">[</span><span class="s2">"log10M1"</span><span class="p">][</span><span class="n">logmass</span><span class="p">][</span><span class="s2">"logP"</span><span class="p">][</span><span class="n">logperiod</span><span class="p">][</span>
+ <span class="s2">"normed_bin_frac_p_dist"</span>
+ <span class="p">]</span>
+ <span class="o">/</span> <span class="n">dlog10P</span><span class="p">,</span>
+ <span class="n">json_data</span><span class="p">[</span><span class="s2">"log10M1"</span><span class="p">][</span><span class="n">logmass</span><span class="p">][</span><span class="s2">"logP"</span><span class="p">][</span><span class="n">logperiod</span><span class="p">][</span>
+ <span class="s2">"normed_tripquad_frac_p_dist"</span>
+ <span class="p">]</span>
+ <span class="o">/</span> <span class="n">dlog10P</span><span class="p">,</span>
+ <span class="p">]</span>
+ <span class="p">)</span>
+
+ <span class="c1">############################################################</span>
+ <span class="c1"># distributions as a function of mass, period, q</span>
+ <span class="c1">#</span>
+ <span class="c1"># First, get a list of the qs given by Moe</span>
+ <span class="c1">#</span>
+ <span class="n">qs</span> <span class="o">=</span> <span class="nb">sorted</span><span class="p">(</span><span class="n">json_data</span><span class="p">[</span><span class="s2">"log10M1"</span><span class="p">][</span><span class="n">logmass</span><span class="p">][</span><span class="s2">"logP"</span><span class="p">][</span><span class="n">logperiod</span><span class="p">][</span><span class="s2">"q"</span><span class="p">])</span>
+
+ <span class="c1"># Fill the data and 'normalise'</span>
+ <span class="n">qdata</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">fill_data</span><span class="p">(</span>
+ <span class="n">qs</span><span class="p">,</span> <span class="n">json_data</span><span class="p">[</span><span class="s2">"log10M1"</span><span class="p">][</span><span class="n">logmass</span><span class="p">][</span><span class="s2">"logP"</span><span class="p">][</span><span class="n">logperiod</span><span class="p">][</span><span class="s2">"q"</span><span class="p">]</span>
+ <span class="p">)</span>
+
+ <span class="c1"># Create the multiplicity table</span>
+ <span class="k">if</span> <span class="ow">not</span> <span class="n">Moecache</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s2">"q_distributions"</span><span class="p">,</span> <span class="kc">None</span><span class="p">):</span>
+ <span class="n">Moecache</span><span class="p">[</span><span class="s2">"q_distributions"</span><span class="p">]</span> <span class="o">=</span> <span class="p">[]</span>
+
+ <span class="k">for</span> <span class="n">q</span> <span class="ow">in</span> <span class="n">qs</span><span class="p">:</span>
+ <span class="n">Moecache</span><span class="p">[</span><span class="s2">"q_distributions"</span><span class="p">]</span><span class="o">.</span><span class="n">append</span><span class="p">(</span>
+ <span class="p">[</span><span class="nb">float</span><span class="p">(</span><span class="n">logmass</span><span class="p">),</span> <span class="nb">float</span><span class="p">(</span><span class="n">logperiod</span><span class="p">),</span> <span class="nb">float</span><span class="p">(</span><span class="n">q</span><span class="p">),</span> <span class="n">qdata</span><span class="p">[</span><span class="n">q</span><span class="p">]]</span>
+ <span class="p">)</span>
+
+ <span class="c1">############################################################</span>
+ <span class="c1"># eccentricity distributions as a function of mass, period, ecc</span>
+ <span class="n">eccs</span> <span class="o">=</span> <span class="nb">sorted</span><span class="p">(</span><span class="n">json_data</span><span class="p">[</span><span class="s2">"log10M1"</span><span class="p">][</span><span class="n">logmass</span><span class="p">][</span><span class="s2">"logP"</span><span class="p">][</span><span class="n">logperiod</span><span class="p">][</span><span class="s2">"e"</span><span class="p">])</span>
+
+ <span class="c1"># Fill the data and 'normalise'</span>
+ <span class="n">ecc_data</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">fill_data</span><span class="p">(</span>
+ <span class="n">eccs</span><span class="p">,</span> <span class="n">json_data</span><span class="p">[</span><span class="s2">"log10M1"</span><span class="p">][</span><span class="n">logmass</span><span class="p">][</span><span class="s2">"logP"</span><span class="p">][</span><span class="n">logperiod</span><span class="p">][</span><span class="s2">"e"</span><span class="p">]</span>
+ <span class="p">)</span>
+
+ <span class="c1"># Create the multiplicity table</span>
+ <span class="k">if</span> <span class="ow">not</span> <span class="n">Moecache</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s2">"ecc_distributions"</span><span class="p">,</span> <span class="kc">None</span><span class="p">):</span>
+ <span class="n">Moecache</span><span class="p">[</span><span class="s2">"ecc_distributions"</span><span class="p">]</span> <span class="o">=</span> <span class="p">[]</span>
+
+ <span class="k">for</span> <span class="n">ecc</span> <span class="ow">in</span> <span class="n">eccs</span><span class="p">:</span>
+ <span class="n">Moecache</span><span class="p">[</span><span class="s2">"ecc_distributions"</span><span class="p">]</span><span class="o">.</span><span class="n">append</span><span class="p">(</span>
+ <span class="p">[</span>
+ <span class="nb">float</span><span class="p">(</span><span class="n">logmass</span><span class="p">),</span>
+ <span class="nb">float</span><span class="p">(</span><span class="n">logperiod</span><span class="p">),</span>
+ <span class="nb">float</span><span class="p">(</span><span class="n">ecc</span><span class="p">),</span>
+ <span class="n">ecc_data</span><span class="p">[</span><span class="n">ecc</span><span class="p">],</span>
+ <span class="p">]</span>
+ <span class="p">)</span>
+
+ <span class="c1">############################################################</span>
+ <span class="c1"># upper bound the period distributions to zero probability</span>
+ <span class="n">Moecache</span><span class="p">[</span><span class="s2">"period_distributions"</span><span class="p">]</span><span class="o">.</span><span class="n">append</span><span class="p">(</span>
+ <span class="p">[</span>
+ <span class="nb">float</span><span class="p">(</span><span class="n">logmass</span><span class="p">),</span>
+ <span class="nb">float</span><span class="p">(</span><span class="n">logperiods</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">])</span> <span class="o">+</span> <span class="mf">0.5</span> <span class="o">*</span> <span class="n">dlog10P</span><span class="p">,</span> <span class="c1"># TODO: why this shift? to center it?</span>
+ <span class="n">json_data</span><span class="p">[</span><span class="s2">"log10M1"</span><span class="p">][</span><span class="n">logmass</span><span class="p">][</span><span class="s2">"logP"</span><span class="p">][</span><span class="n">logperiods</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">]][</span>
+ <span class="s2">"normed_bin_frac_p_dist"</span>
+ <span class="p">]</span>
+ <span class="o">/</span> <span class="n">dlog10P</span><span class="p">,</span>
+ <span class="n">json_data</span><span class="p">[</span><span class="s2">"log10M1"</span><span class="p">][</span><span class="n">logmass</span><span class="p">][</span><span class="s2">"logP"</span><span class="p">][</span><span class="n">logperiods</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">]][</span>
+ <span class="s2">"normed_tripquad_frac_p_dist"</span>
+ <span class="p">]</span>
+ <span class="o">/</span> <span class="n">dlog10P</span><span class="p">,</span>
+ <span class="p">]</span>
+ <span class="p">)</span>
+ <span class="n">Moecache</span><span class="p">[</span><span class="s2">"period_distributions"</span><span class="p">]</span><span class="o">.</span><span class="n">append</span><span class="p">(</span>
+ <span class="p">[</span>
+ <span class="nb">float</span><span class="p">(</span><span class="n">logmass</span><span class="p">),</span>
+ <span class="nb">float</span><span class="p">(</span><span class="n">logperiods</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">])</span> <span class="o">+</span> <span class="mf">0.5</span> <span class="o">*</span> <span class="n">dlog10P</span> <span class="o">+</span> <span class="n">epslog10P</span><span class="p">,</span>
+ <span class="mf">0.0</span><span class="p">,</span>
+ <span class="mf">0.0</span><span class="p">,</span>
+ <span class="p">]</span>
+ <span class="p">)</span>
+
+ <span class="n">verbose_print</span><span class="p">(</span>
+ <span class="s2">"</span><span class="se">\t</span><span class="s2">Moe_di_Stefano_2017: Length period_distributions table: </span><span class="si">{}</span><span class="s2">"</span><span class="o">.</span><span class="n">format</span><span class="p">(</span>
+ <span class="nb">len</span><span class="p">(</span><span class="n">Moecache</span><span class="p">[</span><span class="s2">"period_distributions"</span><span class="p">])</span>
+ <span class="p">),</span>
+ <span class="bp">self</span><span class="o">.</span><span class="n">grid_options</span><span class="p">[</span><span class="s2">"verbosity"</span><span class="p">],</span>
+ <span class="n">_MOE2017_VERBOSITY_LEVEL</span><span class="p">,</span>
+ <span class="p">)</span>
+ <span class="n">verbose_print</span><span class="p">(</span>
+ <span class="s2">"</span><span class="se">\t</span><span class="s2">Moe_di_Stefano_2017: Length multiplicity table: </span><span class="si">{}</span><span class="s2">"</span><span class="o">.</span><span class="n">format</span><span class="p">(</span>
+ <span class="nb">len</span><span class="p">(</span><span class="n">Moecache</span><span class="p">[</span><span class="s2">"multiplicity_table"</span><span class="p">])</span>
+ <span class="p">),</span>
+ <span class="bp">self</span><span class="o">.</span><span class="n">grid_options</span><span class="p">[</span><span class="s2">"verbosity"</span><span class="p">],</span>
+ <span class="n">_MOE2017_VERBOSITY_LEVEL</span><span class="p">,</span>
+ <span class="p">)</span>
+ <span class="n">verbose_print</span><span class="p">(</span>
+ <span class="s2">"</span><span class="se">\t</span><span class="s2">Moe_di_Stefano_2017: Length q table: </span><span class="si">{}</span><span class="s2">"</span><span class="o">.</span><span class="n">format</span><span class="p">(</span>
+ <span class="nb">len</span><span class="p">(</span><span class="n">Moecache</span><span class="p">[</span><span class="s2">"q_distributions"</span><span class="p">])</span>
+ <span class="p">),</span>
+ <span class="bp">self</span><span class="o">.</span><span class="n">grid_options</span><span class="p">[</span><span class="s2">"verbosity"</span><span class="p">],</span>
+ <span class="n">_MOE2017_VERBOSITY_LEVEL</span><span class="p">,</span>
+ <span class="p">)</span>
+ <span class="n">verbose_print</span><span class="p">(</span>
+ <span class="s2">"</span><span class="se">\t</span><span class="s2">Moe_di_Stefano_2017: Length ecc table: </span><span class="si">{}</span><span class="s2">"</span><span class="o">.</span><span class="n">format</span><span class="p">(</span>
+ <span class="nb">len</span><span class="p">(</span><span class="n">Moecache</span><span class="p">[</span><span class="s2">"ecc_distributions"</span><span class="p">])</span>
+ <span class="p">),</span>
+ <span class="bp">self</span><span class="o">.</span><span class="n">grid_options</span><span class="p">[</span><span class="s2">"verbosity"</span><span class="p">],</span>
+ <span class="n">_MOE2017_VERBOSITY_LEVEL</span><span class="p">,</span>
+ <span class="p">)</span>
+
+ <span class="c1"># Write to log file</span>
+ <span class="n">os</span><span class="o">.</span><span class="n">makedirs</span><span class="p">(</span>
+ <span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">join</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">grid_options</span><span class="p">[</span><span class="s2">"tmp_dir"</span><span class="p">],</span> <span class="s2">"moe_distefano"</span><span class="p">),</span>
+ <span class="n">exist_ok</span><span class="o">=</span><span class="kc">True</span><span class="p">,</span>
+ <span class="p">)</span>
+ <span class="k">with</span> <span class="nb">open</span><span class="p">(</span>
+ <span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">join</span><span class="p">(</span>
+ <span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">join</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">grid_options</span><span class="p">[</span><span class="s2">"tmp_dir"</span><span class="p">],</span> <span class="s2">"moe_distefano"</span><span class="p">),</span>
+ <span class="s2">"moecache.json"</span><span class="p">,</span>
+ <span class="p">),</span>
+ <span class="s2">"w"</span><span class="p">,</span>
+ <span class="n">encoding</span><span class="o">=</span><span class="s2">"utf-8"</span><span class="p">,</span>
+ <span class="p">)</span> <span class="k">as</span> <span class="n">cache_filehandle</span><span class="p">:</span>
+ <span class="n">cache_filehandle</span><span class="o">.</span><span class="n">write</span><span class="p">(</span>
+ <span class="n">json</span><span class="o">.</span><span class="n">dumps</span><span class="p">(</span><span class="n">Moecache</span><span class="p">,</span> <span class="n">indent</span><span class="o">=</span><span class="mi">4</span><span class="p">,</span> <span class="n">ensure_ascii</span><span class="o">=</span><span class="kc">False</span><span class="p">)</span>
+ <span class="p">)</span>
+
+ <span class="c1"># Signal that the data has been loaded</span>
+ <span class="bp">self</span><span class="o">.</span><span class="n">grid_options</span><span class="p">[</span><span class="s2">"_loaded_Moe2017_data"</span><span class="p">]</span> <span class="o">=</span> <span class="kc">True</span>
+
+ <span class="k">def</span> <span class="nf">_set_moe_di_stefano_distributions</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
+ <span class="sd">"""</span>
+<span class="sd"> Function to set the Moe & di Stefano distribution</span>
+<span class="sd"> """</span>
+
+ <span class="c1">############################################################</span>
+ <span class="c1"># first, the multiplicity, this is 1,2,3,4, ...</span>
+ <span class="c1"># for singles, binaries, triples, quadruples, ...</span>
+
+ <span class="n">max_multiplicity</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">get_max_multiplicity</span><span class="p">(</span>
+ <span class="bp">self</span><span class="o">.</span><span class="n">grid_options</span><span class="p">[</span><span class="s2">"Moe2017_options"</span><span class="p">][</span><span class="s2">"multiplicity_modulator"</span><span class="p">]</span>
+ <span class="p">)</span>
+ <span class="n">verbose_print</span><span class="p">(</span>
+ <span class="s2">"</span><span class="se">\t</span><span class="s2">Moe_di_Stefano_2017: Max multiplicity = </span><span class="si">{}</span><span class="s2">"</span><span class="o">.</span><span class="n">format</span><span class="p">(</span><span class="n">max_multiplicity</span><span class="p">),</span>
+ <span class="bp">self</span><span class="o">.</span><span class="n">grid_options</span><span class="p">[</span><span class="s2">"verbosity"</span><span class="p">],</span>
+ <span class="n">_MOE2017_VERBOSITY_LEVEL</span><span class="p">,</span>
+ <span class="p">)</span>
+ <span class="c1">######</span>
+ <span class="c1"># Setting up the grid variables</span>
+
+ <span class="c1"># Multiplicity</span>
+ <span class="bp">self</span><span class="o">.</span><span class="n">add_grid_variable</span><span class="p">(</span>
+ <span class="n">name</span><span class="o">=</span><span class="s2">"multiplicity"</span><span class="p">,</span>
+ <span class="n">parameter_name</span><span class="o">=</span><span class="s2">"multiplicity"</span><span class="p">,</span>
+ <span class="n">longname</span><span class="o">=</span><span class="s2">"multiplicity"</span><span class="p">,</span>
+ <span class="n">valuerange</span><span class="o">=</span><span class="p">[</span><span class="mi">1</span><span class="p">,</span> <span class="n">max_multiplicity</span><span class="p">],</span>
+ <span class="n">samplerfunc</span><span class="o">=</span><span class="s2">"self.const_int(1, </span><span class="si">{n}</span><span class="s2">, </span><span class="si">{n}</span><span class="s2">)"</span><span class="o">.</span><span class="n">format</span><span class="p">(</span><span class="n">n</span><span class="o">=</span><span class="n">max_multiplicity</span><span class="p">),</span>
+ <span class="n">precode</span><span class="o">=</span><span class="s1">'self.grid_options["multiplicity"] = multiplicity; self.bse_options["multiplicity"] = multiplicity; options=</span><span class="si">{}</span><span class="s1">'</span><span class="o">.</span><span class="n">format</span><span class="p">(</span>
+ <span class="bp">self</span><span class="o">.</span><span class="n">grid_options</span><span class="p">[</span><span class="s2">"Moe2017_options"</span><span class="p">]</span>
+ <span class="p">),</span>
+ <span class="n">condition</span><span class="o">=</span><span class="s2">"(</span><span class="si">{}</span><span class="s2">[int(multiplicity)-1] > 0)"</span><span class="o">.</span><span class="n">format</span><span class="p">(</span>
+ <span class="nb">str</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">grid_options</span><span class="p">[</span><span class="s2">"Moe2017_options"</span><span class="p">][</span><span class="s2">"multiplicity_modulator"</span><span class="p">])</span>
+ <span class="p">),</span>
+ <span class="n">gridtype</span><span class="o">=</span><span class="s2">"discrete"</span><span class="p">,</span>
+ <span class="n">probdist</span><span class="o">=</span><span class="mi">1</span><span class="p">,</span>
+ <span class="p">)</span>
+
+ <span class="c1">############################################################</span>
+ <span class="c1"># always require M1, for all systems</span>
+ <span class="c1">#</span>
+ <span class="c1"># log-spaced m1 with given resolution</span>
+ <span class="bp">self</span><span class="o">.</span><span class="n">add_grid_variable</span><span class="p">(</span>
+ <span class="n">name</span><span class="o">=</span><span class="s2">"lnM_1"</span><span class="p">,</span>
+ <span class="n">parameter_name</span><span class="o">=</span><span class="s2">"M_1"</span><span class="p">,</span>
+ <span class="n">longname</span><span class="o">=</span><span class="s2">"Primary mass"</span><span class="p">,</span>
+ <span class="n">samplerfunc</span><span class="o">=</span><span class="bp">self</span><span class="o">.</span><span class="n">grid_options</span><span class="p">[</span><span class="s2">"Moe2017_options"</span><span class="p">][</span><span class="s2">"samplerfuncs"</span><span class="p">][</span><span class="s2">"M"</span><span class="p">][</span><span class="mi">0</span><span class="p">]</span>
+ <span class="ow">or</span> <span class="s2">"self.const_linear(np.log(</span><span class="si">{}</span><span class="s2">), np.log(</span><span class="si">{}</span><span class="s2">), </span><span class="si">{}</span><span class="s2">)"</span><span class="o">.</span><span class="n">format</span><span class="p">(</span>
+ <span class="bp">self</span><span class="o">.</span><span class="n">grid_options</span><span class="p">[</span><span class="s2">"Moe2017_options"</span><span class="p">][</span><span class="s2">"ranges"</span><span class="p">][</span><span class="s2">"M"</span><span class="p">][</span><span class="mi">0</span><span class="p">],</span>
+ <span class="bp">self</span><span class="o">.</span><span class="n">grid_options</span><span class="p">[</span><span class="s2">"Moe2017_options"</span><span class="p">][</span><span class="s2">"ranges"</span><span class="p">][</span><span class="s2">"M"</span><span class="p">][</span><span class="mi">1</span><span class="p">],</span>
+ <span class="bp">self</span><span class="o">.</span><span class="n">grid_options</span><span class="p">[</span><span class="s2">"Moe2017_options"</span><span class="p">][</span><span class="s2">"resolutions"</span><span class="p">][</span><span class="s2">"M"</span><span class="p">][</span><span class="mi">0</span><span class="p">],</span>
+ <span class="p">),</span>
+ <span class="n">valuerange</span><span class="o">=</span><span class="p">[</span>
+ <span class="s2">"np.log(</span><span class="si">{}</span><span class="s2">)"</span><span class="o">.</span><span class="n">format</span><span class="p">(</span>
+ <span class="bp">self</span><span class="o">.</span><span class="n">grid_options</span><span class="p">[</span><span class="s2">"Moe2017_options"</span><span class="p">][</span><span class="s2">"ranges"</span><span class="p">][</span><span class="s2">"M"</span><span class="p">][</span><span class="mi">0</span><span class="p">]</span>
+ <span class="p">),</span>
+ <span class="s2">"np.log(</span><span class="si">{}</span><span class="s2">)"</span><span class="o">.</span><span class="n">format</span><span class="p">(</span>
+ <span class="bp">self</span><span class="o">.</span><span class="n">grid_options</span><span class="p">[</span><span class="s2">"Moe2017_options"</span><span class="p">][</span><span class="s2">"ranges"</span><span class="p">][</span><span class="s2">"M"</span><span class="p">][</span><span class="mi">1</span><span class="p">]</span>
+ <span class="p">),</span>
+ <span class="p">],</span>
+ <span class="n">gridtype</span><span class="o">=</span><span class="s2">"centred"</span><span class="p">,</span>
+ <span class="n">dphasevol</span><span class="o">=</span><span class="s2">"dlnM_1"</span><span class="p">,</span>
+ <span class="n">precode</span><span class="o">=</span><span class="s1">'M_1 = np.exp(lnM_1); options["M_1"]=M_1'</span><span class="p">,</span>
+ <span class="n">probdist</span><span class="o">=</span><span class="s2">"self.Moe_di_Stefano_2017_pdf({{</span><span class="si">{}</span><span class="s2">, </span><span class="si">{}</span><span class="s2">, </span><span class="si">{}</span><span class="s2">}}, verbosity=self.grid_options['verbosity'])['total_probdens'] if multiplicity == 1 else 1"</span><span class="o">.</span><span class="n">format</span><span class="p">(</span>
+ <span class="nb">str</span><span class="p">(</span><span class="nb">dict</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">grid_options</span><span class="p">[</span><span class="s2">"Moe2017_options"</span><span class="p">]))[</span><span class="mi">1</span><span class="p">:</span><span class="o">-</span><span class="mi">1</span><span class="p">],</span>
+ <span class="s2">"'multiplicity': multiplicity"</span><span class="p">,</span>
+ <span class="s2">"'M_1': M_1"</span><span class="p">,</span>
+ <span class="p">),</span>
+ <span class="p">)</span>
+
+ <span class="c1"># Go to higher multiplicities</span>
+ <span class="k">if</span> <span class="n">max_multiplicity</span> <span class="o">>=</span> <span class="mi">2</span><span class="p">:</span>
+ <span class="c1"># binaries: period</span>
+ <span class="bp">self</span><span class="o">.</span><span class="n">add_grid_variable</span><span class="p">(</span>
+ <span class="n">name</span><span class="o">=</span><span class="s2">"log10per"</span><span class="p">,</span>
+ <span class="n">parameter_name</span><span class="o">=</span><span class="s2">"orbital_period"</span><span class="p">,</span>
+ <span class="n">longname</span><span class="o">=</span><span class="s2">"log10(Orbital_Period)"</span><span class="p">,</span>
+ <span class="n">probdist</span><span class="o">=</span><span class="mf">1.0</span><span class="p">,</span>
+ <span class="n">condition</span><span class="o">=</span><span class="s1">'(self.grid_options["multiplicity"] >= 2)'</span><span class="p">,</span>
+ <span class="n">branchpoint</span><span class="o">=</span><span class="mi">1</span>
+ <span class="k">if</span> <span class="n">max_multiplicity</span> <span class="o">></span> <span class="mi">1</span>
+ <span class="k">else</span> <span class="mi">0</span><span class="p">,</span> <span class="c1"># Signal here to put a branchpoint if we have a max multiplicity higher than 1.</span>
+ <span class="n">gridtype</span><span class="o">=</span><span class="s2">"centred"</span><span class="p">,</span>
+ <span class="n">dphasevol</span><span class="o">=</span><span class="s2">"(</span><span class="si">{}</span><span class="s2"> * dlog10per)"</span><span class="o">.</span><span class="n">format</span><span class="p">(</span><span class="n">LOG_LN_CONVERTER</span><span class="p">),</span>
+ <span class="n">valuerange</span><span class="o">=</span><span class="p">[</span>
+ <span class="bp">self</span><span class="o">.</span><span class="n">grid_options</span><span class="p">[</span><span class="s2">"Moe2017_options"</span><span class="p">][</span><span class="s2">"ranges"</span><span class="p">][</span><span class="s2">"logP"</span><span class="p">][</span><span class="mi">0</span><span class="p">],</span>
+ <span class="bp">self</span><span class="o">.</span><span class="n">grid_options</span><span class="p">[</span><span class="s2">"Moe2017_options"</span><span class="p">][</span><span class="s2">"ranges"</span><span class="p">][</span><span class="s2">"logP"</span><span class="p">][</span><span class="mi">1</span><span class="p">],</span>
+ <span class="p">],</span>
+ <span class="n">samplerfunc</span><span class="o">=</span><span class="bp">self</span><span class="o">.</span><span class="n">grid_options</span><span class="p">[</span><span class="s2">"Moe2017_options"</span><span class="p">][</span><span class="s2">"samplerfuncs"</span><span class="p">][</span>
+ <span class="s2">"logP"</span>
+ <span class="p">][</span><span class="mi">0</span><span class="p">]</span>
+ <span class="ow">or</span> <span class="s2">"self.const_linear(</span><span class="si">{}</span><span class="s2">, </span><span class="si">{}</span><span class="s2">, </span><span class="si">{}</span><span class="s2">)"</span><span class="o">.</span><span class="n">format</span><span class="p">(</span>
+ <span class="bp">self</span><span class="o">.</span><span class="n">grid_options</span><span class="p">[</span><span class="s2">"Moe2017_options"</span><span class="p">][</span><span class="s2">"ranges"</span><span class="p">][</span><span class="s2">"logP"</span><span class="p">][</span><span class="mi">0</span><span class="p">],</span>
+ <span class="bp">self</span><span class="o">.</span><span class="n">grid_options</span><span class="p">[</span><span class="s2">"Moe2017_options"</span><span class="p">][</span><span class="s2">"ranges"</span><span class="p">][</span><span class="s2">"logP"</span><span class="p">][</span><span class="mi">1</span><span class="p">],</span>
+ <span class="bp">self</span><span class="o">.</span><span class="n">grid_options</span><span class="p">[</span><span class="s2">"Moe2017_options"</span><span class="p">][</span><span class="s2">"resolutions"</span><span class="p">][</span><span class="s2">"logP"</span><span class="p">][</span><span class="mi">0</span><span class="p">],</span>
+ <span class="p">),</span>
+ <span class="n">precode</span><span class="o">=</span><span class="s2">"""orbital_period = 10.0**log10per</span>
+<span class="s2">qmin=</span><span class="si">{}</span><span class="s2">/M_1</span>
+<span class="s2">qmax=maximum_mass_ratio_for_RLOF(M_1, orbital_period)</span>
+<span class="s2">"""</span><span class="o">.</span><span class="n">format</span><span class="p">(</span>
+ <span class="bp">self</span><span class="o">.</span><span class="n">grid_options</span><span class="p">[</span><span class="s2">"Moe2017_options"</span><span class="p">][</span><span class="s2">"Mmin"</span><span class="p">]</span>
+ <span class="p">),</span>
+ <span class="p">)</span> <span class="c1"># TODO: change the maximum_mass_ratio_for_RLOF</span>
+
+ <span class="c1"># binaries: mass ratio</span>
+ <span class="bp">self</span><span class="o">.</span><span class="n">add_grid_variable</span><span class="p">(</span>
+ <span class="n">name</span><span class="o">=</span><span class="s2">"q"</span><span class="p">,</span>
+ <span class="n">parameter_name</span><span class="o">=</span><span class="s2">"M_2"</span><span class="p">,</span>
+ <span class="n">longname</span><span class="o">=</span><span class="s2">"Mass ratio"</span><span class="p">,</span>
+ <span class="n">valuerange</span><span class="o">=</span><span class="p">[</span>
+ <span class="bp">self</span><span class="o">.</span><span class="n">grid_options</span><span class="p">[</span><span class="s2">"Moe2017_options"</span><span class="p">][</span><span class="s2">"ranges"</span><span class="p">][</span><span class="s2">"q"</span><span class="p">][</span><span class="mi">0</span><span class="p">]</span>
+ <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">grid_options</span><span class="p">[</span><span class="s2">"Moe2017_options"</span><span class="p">]</span>
+ <span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s2">"ranges"</span><span class="p">,</span> <span class="p">{})</span>
+ <span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s2">"q"</span><span class="p">,</span> <span class="kc">None</span><span class="p">)</span>
+ <span class="k">else</span> <span class="s2">"options['Mmin']/M_1"</span><span class="p">,</span>
+ <span class="bp">self</span><span class="o">.</span><span class="n">grid_options</span><span class="p">[</span><span class="s2">"Moe2017_options"</span><span class="p">][</span><span class="s2">"ranges"</span><span class="p">][</span><span class="s2">"q"</span><span class="p">][</span><span class="mi">1</span><span class="p">]</span>
+ <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">grid_options</span><span class="p">[</span><span class="s2">"Moe2017_options"</span><span class="p">]</span>
+ <span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s2">"ranges"</span><span class="p">,</span> <span class="p">{})</span>
+ <span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s2">"q"</span><span class="p">,</span> <span class="kc">None</span><span class="p">)</span>
+ <span class="k">else</span> <span class="s2">"qmax"</span><span class="p">,</span>
+ <span class="p">],</span>
+ <span class="n">probdist</span><span class="o">=</span><span class="mi">1</span><span class="p">,</span>
+ <span class="n">gridtype</span><span class="o">=</span><span class="s2">"centred"</span><span class="p">,</span>
+ <span class="n">dphasevol</span><span class="o">=</span><span class="s2">"dq"</span><span class="p">,</span>
+ <span class="n">precode</span><span class="o">=</span><span class="s2">"""</span>
+<span class="s2">M_2 = q * M_1</span>
+<span class="s2">sep = calc_sep_from_period(M_1, M_2, orbital_period)</span>
+<span class="s2"> """</span><span class="p">,</span>
+ <span class="n">samplerfunc</span><span class="o">=</span><span class="bp">self</span><span class="o">.</span><span class="n">grid_options</span><span class="p">[</span><span class="s2">"Moe2017_options"</span><span class="p">][</span><span class="s2">"samplerfuncs"</span><span class="p">][</span><span class="s2">"M"</span><span class="p">][</span><span class="mi">1</span><span class="p">]</span>
+ <span class="ow">or</span> <span class="s2">"self.const_linear(</span><span class="si">{}</span><span class="s2">, </span><span class="si">{}</span><span class="s2">, </span><span class="si">{}</span><span class="s2">)"</span><span class="o">.</span><span class="n">format</span><span class="p">(</span>
+ <span class="bp">self</span><span class="o">.</span><span class="n">grid_options</span><span class="p">[</span><span class="s2">"Moe2017_options"</span><span class="p">][</span><span class="s2">"ranges"</span><span class="p">][</span><span class="s2">"q"</span><span class="p">][</span><span class="mi">0</span><span class="p">]</span>
+ <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">grid_options</span><span class="p">[</span><span class="s2">"Moe2017_options"</span><span class="p">]</span>
+ <span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s2">"ranges"</span><span class="p">,</span> <span class="p">{})</span>
+ <span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s2">"q"</span><span class="p">,</span> <span class="p">[</span><span class="kc">None</span><span class="p">,</span> <span class="kc">None</span><span class="p">])[</span><span class="mi">0</span><span class="p">]</span>
+ <span class="k">else</span> <span class="s2">"</span><span class="si">{}</span><span class="s2">/M_1"</span><span class="o">.</span><span class="n">format</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">grid_options</span><span class="p">[</span><span class="s2">"Moe2017_options"</span><span class="p">][</span><span class="s2">"Mmin"</span><span class="p">]),</span>
+ <span class="bp">self</span><span class="o">.</span><span class="n">grid_options</span><span class="p">[</span><span class="s2">"Moe2017_options"</span><span class="p">][</span><span class="s2">"ranges"</span><span class="p">][</span><span class="s2">"q"</span><span class="p">][</span><span class="mi">1</span><span class="p">]</span>
+ <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">grid_options</span><span class="p">[</span><span class="s2">"Moe2017_options"</span><span class="p">]</span>
+ <span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s2">"ranges"</span><span class="p">,</span> <span class="p">{})</span>
+ <span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s2">"q"</span><span class="p">,</span> <span class="p">[</span><span class="kc">None</span><span class="p">,</span> <span class="kc">None</span><span class="p">])[</span><span class="mi">1</span><span class="p">]</span>
+ <span class="k">else</span> <span class="s2">"qmax"</span><span class="p">,</span>
+ <span class="bp">self</span><span class="o">.</span><span class="n">grid_options</span><span class="p">[</span><span class="s2">"Moe2017_options"</span><span class="p">][</span><span class="s2">"resolutions"</span><span class="p">][</span><span class="s2">"M"</span><span class="p">][</span><span class="mi">1</span><span class="p">],</span>
+ <span class="p">),</span>
+ <span class="p">)</span>
+
+ <span class="c1"># (optional) binaries: eccentricity</span>
+ <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">grid_options</span><span class="p">[</span><span class="s2">"Moe2017_options"</span><span class="p">][</span><span class="s2">"resolutions"</span><span class="p">][</span><span class="s2">"ecc"</span><span class="p">][</span><span class="mi">0</span><span class="p">]</span> <span class="o">></span> <span class="mi">0</span><span class="p">:</span>
+ <span class="bp">self</span><span class="o">.</span><span class="n">add_grid_variable</span><span class="p">(</span>
+ <span class="n">name</span><span class="o">=</span><span class="s2">"ecc"</span><span class="p">,</span>
+ <span class="n">parameter_name</span><span class="o">=</span><span class="s2">"eccentricity"</span><span class="p">,</span>
+ <span class="n">longname</span><span class="o">=</span><span class="s2">"Eccentricity"</span><span class="p">,</span>
+ <span class="n">probdist</span><span class="o">=</span><span class="mi">1</span><span class="p">,</span>
+ <span class="n">gridtype</span><span class="o">=</span><span class="s2">"centred"</span><span class="p">,</span>
+ <span class="n">dphasevol</span><span class="o">=</span><span class="s2">"decc"</span><span class="p">,</span>
+ <span class="n">precode</span><span class="o">=</span><span class="s2">"eccentricity=ecc"</span><span class="p">,</span>
+ <span class="n">valuerange</span><span class="o">=</span><span class="p">[</span>
+ <span class="bp">self</span><span class="o">.</span><span class="n">grid_options</span><span class="p">[</span><span class="s2">"Moe2017_options"</span><span class="p">][</span><span class="s2">"ranges"</span><span class="p">][</span><span class="s2">"ecc"</span><span class="p">][</span>
+ <span class="mi">0</span>
+ <span class="p">],</span> <span class="c1"># Just fail if not defined.</span>
+ <span class="bp">self</span><span class="o">.</span><span class="n">grid_options</span><span class="p">[</span><span class="s2">"Moe2017_options"</span><span class="p">][</span><span class="s2">"ranges"</span><span class="p">][</span><span class="s2">"ecc"</span><span class="p">][</span><span class="mi">1</span><span class="p">],</span>
+ <span class="p">],</span>
+ <span class="n">samplerfunc</span><span class="o">=</span><span class="bp">self</span><span class="o">.</span><span class="n">grid_options</span><span class="p">[</span><span class="s2">"Moe2017_options"</span><span class="p">][</span><span class="s2">"samplerfuncs"</span><span class="p">][</span>
+ <span class="s2">"ecc"</span>
+ <span class="p">][</span><span class="mi">0</span><span class="p">]</span>
+ <span class="ow">or</span> <span class="s2">"self.const_linear(</span><span class="si">{}</span><span class="s2">, </span><span class="si">{}</span><span class="s2">, </span><span class="si">{}</span><span class="s2">)"</span><span class="o">.</span><span class="n">format</span><span class="p">(</span>
+ <span class="bp">self</span><span class="o">.</span><span class="n">grid_options</span><span class="p">[</span><span class="s2">"Moe2017_options"</span><span class="p">][</span><span class="s2">"ranges"</span><span class="p">][</span><span class="s2">"ecc"</span><span class="p">][</span>
+ <span class="mi">0</span>
+ <span class="p">],</span> <span class="c1"># Just fail if not defined.</span>
+ <span class="bp">self</span><span class="o">.</span><span class="n">grid_options</span><span class="p">[</span><span class="s2">"Moe2017_options"</span><span class="p">][</span><span class="s2">"ranges"</span><span class="p">][</span><span class="s2">"ecc"</span><span class="p">][</span><span class="mi">1</span><span class="p">],</span>
+ <span class="bp">self</span><span class="o">.</span><span class="n">grid_options</span><span class="p">[</span><span class="s2">"Moe2017_options"</span><span class="p">][</span><span class="s2">"resolutions"</span><span class="p">][</span><span class="s2">"ecc"</span><span class="p">][</span><span class="mi">0</span><span class="p">],</span>
+ <span class="p">),</span>
+ <span class="p">)</span>
+
+ <span class="c1"># Now for triples and quadruples</span>
+ <span class="k">if</span> <span class="n">max_multiplicity</span> <span class="o">>=</span> <span class="mi">3</span><span class="p">:</span>
+ <span class="c1"># Triple: period</span>
+ <span class="bp">self</span><span class="o">.</span><span class="n">add_grid_variable</span><span class="p">(</span>
+ <span class="n">name</span><span class="o">=</span><span class="s2">"log10per2"</span><span class="p">,</span>
+ <span class="n">parameter_name</span><span class="o">=</span><span class="s2">"orbital_period_triple"</span><span class="p">,</span>
+ <span class="n">longname</span><span class="o">=</span><span class="s2">"log10(Orbital_Period2)"</span><span class="p">,</span>
+ <span class="n">probdist</span><span class="o">=</span><span class="mf">1.0</span><span class="p">,</span>
+ <span class="n">condition</span><span class="o">=</span><span class="s1">'(self.grid_options["multiplicity"] >= 3)'</span><span class="p">,</span>
+ <span class="n">branchpoint</span><span class="o">=</span><span class="mi">2</span>
+ <span class="k">if</span> <span class="n">max_multiplicity</span> <span class="o">></span> <span class="mi">2</span>
+ <span class="k">else</span> <span class="mi">0</span><span class="p">,</span> <span class="c1"># Signal here to put a branchpoint if we have a max multiplicity higher than 1.</span>
+ <span class="n">gridtype</span><span class="o">=</span><span class="s2">"centred"</span><span class="p">,</span>
+ <span class="n">dphasevol</span><span class="o">=</span><span class="s2">"(</span><span class="si">{}</span><span class="s2"> * dlog10per2)"</span><span class="o">.</span><span class="n">format</span><span class="p">(</span><span class="n">LOG_LN_CONVERTER</span><span class="p">),</span>
+ <span class="n">valuerange</span><span class="o">=</span><span class="p">[</span>
+ <span class="bp">self</span><span class="o">.</span><span class="n">grid_options</span><span class="p">[</span><span class="s2">"Moe2017_options"</span><span class="p">][</span><span class="s2">"ranges"</span><span class="p">][</span><span class="s2">"logP"</span><span class="p">][</span><span class="mi">0</span><span class="p">],</span>
+ <span class="bp">self</span><span class="o">.</span><span class="n">grid_options</span><span class="p">[</span><span class="s2">"Moe2017_options"</span><span class="p">][</span><span class="s2">"ranges"</span><span class="p">][</span><span class="s2">"logP"</span><span class="p">][</span><span class="mi">1</span><span class="p">],</span>
+ <span class="p">],</span>
+ <span class="n">samplerfunc</span><span class="o">=</span><span class="bp">self</span><span class="o">.</span><span class="n">grid_options</span><span class="p">[</span><span class="s2">"Moe2017_options"</span><span class="p">][</span><span class="s2">"samplerfuncs"</span><span class="p">][</span>
+ <span class="s2">"logP"</span>
+ <span class="p">][</span><span class="mi">1</span><span class="p">]</span>
+ <span class="ow">or</span> <span class="s2">"self.const_linear(</span><span class="si">{}</span><span class="s2">, </span><span class="si">{}</span><span class="s2">, </span><span class="si">{}</span><span class="s2">)"</span><span class="o">.</span><span class="n">format</span><span class="p">(</span>
+ <span class="bp">self</span><span class="o">.</span><span class="n">grid_options</span><span class="p">[</span><span class="s2">"Moe2017_options"</span><span class="p">][</span><span class="s2">"ranges"</span><span class="p">][</span><span class="s2">"logP"</span><span class="p">][</span><span class="mi">0</span><span class="p">],</span>
+ <span class="bp">self</span><span class="o">.</span><span class="n">grid_options</span><span class="p">[</span><span class="s2">"Moe2017_options"</span><span class="p">][</span><span class="s2">"ranges"</span><span class="p">][</span><span class="s2">"logP"</span><span class="p">][</span><span class="mi">1</span><span class="p">],</span>
+ <span class="bp">self</span><span class="o">.</span><span class="n">grid_options</span><span class="p">[</span><span class="s2">"Moe2017_options"</span><span class="p">][</span><span class="s2">"resolutions"</span><span class="p">][</span><span class="s2">"logP"</span><span class="p">][</span><span class="mi">1</span><span class="p">],</span>
+ <span class="p">),</span>
+ <span class="n">precode</span><span class="o">=</span><span class="s2">"""orbital_period_triple = 10.0**log10per2</span>
+<span class="s2">q2min=</span><span class="si">{}</span><span class="s2">/(M_1+M_2)</span>
+<span class="s2">q2max=maximum_mass_ratio_for_RLOF(M_1+M_2, orbital_period_triple)</span>
+<span class="s2"> """</span><span class="o">.</span><span class="n">format</span><span class="p">(</span>
+ <span class="bp">self</span><span class="o">.</span><span class="n">grid_options</span><span class="p">[</span><span class="s2">"Moe2017_options"</span><span class="p">][</span><span class="s2">"Mmin"</span><span class="p">]</span>
+ <span class="p">),</span>
+ <span class="p">)</span>
+
+ <span class="c1"># Triples: mass ratio</span>
+ <span class="c1"># Note, the mass ratio is M_outer/M_inner</span>
+ <span class="bp">self</span><span class="o">.</span><span class="n">add_grid_variable</span><span class="p">(</span>
+ <span class="n">name</span><span class="o">=</span><span class="s2">"q2"</span><span class="p">,</span>
+ <span class="n">parameter_name</span><span class="o">=</span><span class="s2">"M_3"</span><span class="p">,</span>
+ <span class="n">longname</span><span class="o">=</span><span class="s2">"Mass ratio outer/inner"</span><span class="p">,</span>
+ <span class="n">valuerange</span><span class="o">=</span><span class="p">[</span>
+ <span class="bp">self</span><span class="o">.</span><span class="n">grid_options</span><span class="p">[</span><span class="s2">"Moe2017_options"</span><span class="p">][</span><span class="s2">"ranges"</span><span class="p">][</span><span class="s2">"q"</span><span class="p">][</span><span class="mi">0</span><span class="p">]</span>
+ <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">grid_options</span><span class="p">[</span><span class="s2">"Moe2017_options"</span><span class="p">]</span>
+ <span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s2">"ranges"</span><span class="p">,</span> <span class="p">{})</span>
+ <span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s2">"q"</span><span class="p">,</span> <span class="kc">None</span><span class="p">)</span>
+ <span class="k">else</span> <span class="s2">"options['Mmin']/(M_1+M_2)"</span><span class="p">,</span>
+ <span class="bp">self</span><span class="o">.</span><span class="n">grid_options</span><span class="p">[</span><span class="s2">"Moe2017_options"</span><span class="p">][</span><span class="s2">"ranges"</span><span class="p">][</span><span class="s2">"q"</span><span class="p">][</span><span class="mi">1</span><span class="p">]</span>
+ <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">grid_options</span><span class="p">[</span><span class="s2">"Moe2017_options"</span><span class="p">]</span>
+ <span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s2">"ranges"</span><span class="p">,</span> <span class="p">{})</span>
+ <span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s2">"q"</span><span class="p">,</span> <span class="kc">None</span><span class="p">)</span>
+ <span class="k">else</span> <span class="s2">"q2max"</span><span class="p">,</span>
+ <span class="p">],</span>
+ <span class="n">probdist</span><span class="o">=</span><span class="mi">1</span><span class="p">,</span>
+ <span class="n">gridtype</span><span class="o">=</span><span class="s2">"centred"</span><span class="p">,</span>
+ <span class="n">dphasevol</span><span class="o">=</span><span class="s2">"dq2"</span><span class="p">,</span>
+ <span class="n">precode</span><span class="o">=</span><span class="s2">"""</span>
+<span class="s2">M_3 = q2 * (M_1 + M_2)</span>
+<span class="s2">sep2 = calc_sep_from_period((M_1+M_2), M_3, orbital_period_triple)</span>
+<span class="s2">eccentricity2=0</span>
+<span class="s2">"""</span><span class="p">,</span>
+ <span class="n">samplerfunc</span><span class="o">=</span><span class="bp">self</span><span class="o">.</span><span class="n">grid_options</span><span class="p">[</span><span class="s2">"Moe2017_options"</span><span class="p">][</span><span class="s2">"samplerfuncs"</span><span class="p">][</span>
+ <span class="s2">"M"</span>
+ <span class="p">][</span><span class="mi">2</span><span class="p">]</span>
+ <span class="ow">or</span> <span class="s2">"self.const_linear(</span><span class="si">{}</span><span class="s2">, </span><span class="si">{}</span><span class="s2">, </span><span class="si">{}</span><span class="s2">)"</span><span class="o">.</span><span class="n">format</span><span class="p">(</span>
+ <span class="bp">self</span><span class="o">.</span><span class="n">grid_options</span><span class="p">[</span><span class="s2">"Moe2017_options"</span><span class="p">][</span><span class="s2">"ranges"</span><span class="p">][</span><span class="s2">"q"</span><span class="p">][</span><span class="mi">0</span><span class="p">]</span>
+ <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">grid_options</span><span class="p">[</span><span class="s2">"Moe2017_options"</span><span class="p">]</span>
+ <span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s2">"ranges"</span><span class="p">,</span> <span class="p">{})</span>
+ <span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s2">"q"</span><span class="p">,</span> <span class="kc">None</span><span class="p">)</span>
+ <span class="k">else</span> <span class="s2">"options['Mmin']/(M_1+M_2)"</span><span class="p">,</span>
+ <span class="bp">self</span><span class="o">.</span><span class="n">grid_options</span><span class="p">[</span><span class="s2">"Moe2017_options"</span><span class="p">][</span><span class="s2">"ranges"</span><span class="p">][</span><span class="s2">"q"</span><span class="p">][</span><span class="mi">1</span><span class="p">]</span>
+ <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">grid_options</span><span class="p">[</span><span class="s2">"Moe2017_options"</span><span class="p">]</span>
+ <span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s2">"ranges"</span><span class="p">,</span> <span class="p">{})</span>
+ <span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s2">"q"</span><span class="p">,</span> <span class="kc">None</span><span class="p">)</span>
+ <span class="k">else</span> <span class="s2">"q2max"</span><span class="p">,</span>
+ <span class="bp">self</span><span class="o">.</span><span class="n">grid_options</span><span class="p">[</span><span class="s2">"Moe2017_options"</span><span class="p">][</span><span class="s2">"resolutions"</span><span class="p">][</span><span class="s2">"M"</span><span class="p">][</span><span class="mi">2</span><span class="p">],</span>
+ <span class="p">),</span>
+ <span class="p">)</span>
+
+ <span class="c1"># (optional) triples: eccentricity</span>
+ <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">grid_options</span><span class="p">[</span><span class="s2">"Moe2017_options"</span><span class="p">][</span><span class="s2">"resolutions"</span><span class="p">][</span><span class="s2">"ecc"</span><span class="p">][</span><span class="mi">1</span><span class="p">]</span> <span class="o">></span> <span class="mi">0</span><span class="p">:</span>
+ <span class="bp">self</span><span class="o">.</span><span class="n">add_grid_variable</span><span class="p">(</span>
+ <span class="n">name</span><span class="o">=</span><span class="s2">"ecc2"</span><span class="p">,</span>
+ <span class="n">parameter_name</span><span class="o">=</span><span class="s2">"eccentricity2"</span><span class="p">,</span>
+ <span class="n">longname</span><span class="o">=</span><span class="s2">"Eccentricity of the triple"</span><span class="p">,</span>
+ <span class="n">probdist</span><span class="o">=</span><span class="mi">1</span><span class="p">,</span>
+ <span class="n">gridtype</span><span class="o">=</span><span class="s2">"centred"</span><span class="p">,</span>
+ <span class="n">dphasevol</span><span class="o">=</span><span class="s2">"decc2"</span><span class="p">,</span>
+ <span class="n">precode</span><span class="o">=</span><span class="s2">"eccentricity2=ecc2"</span><span class="p">,</span>
+ <span class="n">valuerange</span><span class="o">=</span><span class="p">[</span>
+ <span class="bp">self</span><span class="o">.</span><span class="n">grid_options</span><span class="p">[</span><span class="s2">"Moe2017_options"</span><span class="p">][</span><span class="s2">"ranges"</span><span class="p">][</span><span class="s2">"ecc"</span><span class="p">][</span>
+ <span class="mi">0</span>
+ <span class="p">],</span> <span class="c1"># Just fail if not defined.</span>
+ <span class="bp">self</span><span class="o">.</span><span class="n">grid_options</span><span class="p">[</span><span class="s2">"Moe2017_options"</span><span class="p">][</span><span class="s2">"ranges"</span><span class="p">][</span><span class="s2">"ecc"</span><span class="p">][</span><span class="mi">1</span><span class="p">],</span>
+ <span class="p">],</span>
+ <span class="n">samplerfunc</span><span class="o">=</span><span class="bp">self</span><span class="o">.</span><span class="n">grid_options</span><span class="p">[</span><span class="s2">"Moe2017_options"</span><span class="p">][</span>
+ <span class="s2">"samplerfuncs"</span>
+ <span class="p">][</span><span class="s2">"ecc"</span><span class="p">][</span><span class="mi">1</span><span class="p">]</span>
+ <span class="ow">or</span> <span class="s2">"self.const_linear(</span><span class="si">{}</span><span class="s2">, </span><span class="si">{}</span><span class="s2">, </span><span class="si">{}</span><span class="s2">)"</span><span class="o">.</span><span class="n">format</span><span class="p">(</span>
+ <span class="bp">self</span><span class="o">.</span><span class="n">grid_options</span><span class="p">[</span><span class="s2">"Moe2017_options"</span><span class="p">][</span><span class="s2">"ranges"</span><span class="p">][</span><span class="s2">"ecc"</span><span class="p">][</span>
+ <span class="mi">0</span>
+ <span class="p">],</span> <span class="c1"># Just fail if not defined.</span>
+ <span class="bp">self</span><span class="o">.</span><span class="n">grid_options</span><span class="p">[</span><span class="s2">"Moe2017_options"</span><span class="p">][</span><span class="s2">"ranges"</span><span class="p">][</span><span class="s2">"ecc"</span><span class="p">][</span><span class="mi">1</span><span class="p">],</span>
+ <span class="bp">self</span><span class="o">.</span><span class="n">grid_options</span><span class="p">[</span><span class="s2">"Moe2017_options"</span><span class="p">][</span><span class="s2">"resolutions"</span><span class="p">][</span><span class="s2">"ecc"</span><span class="p">][</span>
+ <span class="mi">1</span>
+ <span class="p">],</span>
+ <span class="p">),</span>
+ <span class="p">)</span>
+
+ <span class="k">if</span> <span class="n">max_multiplicity</span> <span class="o">==</span> <span class="mi">4</span><span class="p">:</span>
+ <span class="c1"># Quadruple: period</span>
+ <span class="bp">self</span><span class="o">.</span><span class="n">add_grid_variable</span><span class="p">(</span>
+ <span class="n">name</span><span class="o">=</span><span class="s2">"log10per3"</span><span class="p">,</span>
+ <span class="n">parameter_name</span><span class="o">=</span><span class="s2">"orbital_period_quadruple"</span><span class="p">,</span>
+ <span class="n">longname</span><span class="o">=</span><span class="s2">"log10(Orbital_Period3)"</span><span class="p">,</span>
+ <span class="n">probdist</span><span class="o">=</span><span class="mf">1.0</span><span class="p">,</span>
+ <span class="n">condition</span><span class="o">=</span><span class="s1">'(self.grid_options["multiplicity"] >= 4)'</span><span class="p">,</span>
+ <span class="n">branchpoint</span><span class="o">=</span><span class="mi">3</span>
+ <span class="k">if</span> <span class="n">max_multiplicity</span> <span class="o">></span> <span class="mi">3</span>
+ <span class="k">else</span> <span class="mi">0</span><span class="p">,</span> <span class="c1"># Signal here to put a branchpoint if we have a max multiplicity higher than 1.</span>
+ <span class="n">gridtype</span><span class="o">=</span><span class="s2">"centred"</span><span class="p">,</span>
+ <span class="n">dphasevol</span><span class="o">=</span><span class="s2">"(</span><span class="si">{}</span><span class="s2"> * dlog10per3)"</span><span class="o">.</span><span class="n">format</span><span class="p">(</span><span class="n">LOG_LN_CONVERTER</span><span class="p">),</span>
+ <span class="n">valuerange</span><span class="o">=</span><span class="p">[</span>
+ <span class="bp">self</span><span class="o">.</span><span class="n">grid_options</span><span class="p">[</span><span class="s2">"Moe2017_options"</span><span class="p">][</span><span class="s2">"ranges"</span><span class="p">][</span><span class="s2">"logP"</span><span class="p">][</span><span class="mi">0</span><span class="p">],</span>
+ <span class="bp">self</span><span class="o">.</span><span class="n">grid_options</span><span class="p">[</span><span class="s2">"Moe2017_options"</span><span class="p">][</span><span class="s2">"ranges"</span><span class="p">][</span><span class="s2">"logP"</span><span class="p">][</span><span class="mi">1</span><span class="p">],</span>
+ <span class="p">],</span>
+ <span class="n">samplerfunc</span><span class="o">=</span><span class="bp">self</span><span class="o">.</span><span class="n">grid_options</span><span class="p">[</span><span class="s2">"Moe2017_options"</span><span class="p">][</span>
+ <span class="s2">"samplerfuncs"</span>
+ <span class="p">][</span><span class="s2">"logP"</span><span class="p">][</span><span class="mi">2</span><span class="p">]</span>
+ <span class="ow">or</span> <span class="s2">"self.const_linear(</span><span class="si">{}</span><span class="s2">, </span><span class="si">{}</span><span class="s2">, </span><span class="si">{}</span><span class="s2">)"</span><span class="o">.</span><span class="n">format</span><span class="p">(</span>
+ <span class="bp">self</span><span class="o">.</span><span class="n">grid_options</span><span class="p">[</span><span class="s2">"Moe2017_options"</span><span class="p">][</span><span class="s2">"ranges"</span><span class="p">][</span><span class="s2">"logP"</span><span class="p">][</span><span class="mi">0</span><span class="p">],</span>
+ <span class="bp">self</span><span class="o">.</span><span class="n">grid_options</span><span class="p">[</span><span class="s2">"Moe2017_options"</span><span class="p">][</span><span class="s2">"ranges"</span><span class="p">][</span><span class="s2">"logP"</span><span class="p">][</span><span class="mi">1</span><span class="p">],</span>
+ <span class="bp">self</span><span class="o">.</span><span class="n">grid_options</span><span class="p">[</span><span class="s2">"Moe2017_options"</span><span class="p">][</span><span class="s2">"resolutions"</span><span class="p">][</span><span class="s2">"logP"</span><span class="p">][</span>
+ <span class="mi">2</span>
+ <span class="p">],</span>
+ <span class="p">),</span>
+ <span class="n">precode</span><span class="o">=</span><span class="s2">"""orbital_period_quadruple = 10.0**log10per3</span>
+<span class="s2">q3min=</span><span class="si">{}</span><span class="s2">/(M_3)</span>
+<span class="s2">q3max=maximum_mass_ratio_for_RLOF(M_3, orbital_period_quadruple)</span>
+<span class="s2"> """</span><span class="o">.</span><span class="n">format</span><span class="p">(</span>
+ <span class="bp">self</span><span class="o">.</span><span class="n">grid_options</span><span class="p">[</span><span class="s2">"Moe2017_options"</span><span class="p">][</span><span class="s2">"Mmin"</span><span class="p">]</span>
+ <span class="p">),</span>
+ <span class="p">)</span>
+
+ <span class="c1"># Quadruple: mass ratio : M_outer / M_inner</span>
+ <span class="bp">self</span><span class="o">.</span><span class="n">add_grid_variable</span><span class="p">(</span>
+ <span class="n">name</span><span class="o">=</span><span class="s2">"q3"</span><span class="p">,</span>
+ <span class="n">parameter_name</span><span class="o">=</span><span class="s2">"M_4"</span><span class="p">,</span>
+ <span class="n">longname</span><span class="o">=</span><span class="s2">"Mass ratio outer low/outer high"</span><span class="p">,</span>
+ <span class="n">valuerange</span><span class="o">=</span><span class="p">[</span>
+ <span class="bp">self</span><span class="o">.</span><span class="n">grid_options</span><span class="p">[</span><span class="s2">"Moe2017_options"</span><span class="p">][</span><span class="s2">"ranges"</span><span class="p">][</span><span class="s2">"q"</span><span class="p">][</span><span class="mi">0</span><span class="p">]</span>
+ <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">grid_options</span><span class="p">[</span><span class="s2">"Moe2017_options"</span><span class="p">]</span>
+ <span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s2">"ranges"</span><span class="p">,</span> <span class="p">{})</span>
+ <span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s2">"q"</span><span class="p">,</span> <span class="kc">None</span><span class="p">)</span>
+ <span class="k">else</span> <span class="s2">"options['Mmin']/(M_3)"</span><span class="p">,</span>
+ <span class="bp">self</span><span class="o">.</span><span class="n">grid_options</span><span class="p">[</span><span class="s2">"Moe2017_options"</span><span class="p">][</span><span class="s2">"ranges"</span><span class="p">][</span><span class="s2">"q"</span><span class="p">][</span><span class="mi">1</span><span class="p">]</span>
+ <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">grid_options</span><span class="p">[</span><span class="s2">"Moe2017_options"</span><span class="p">]</span>
+ <span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s2">"ranges"</span><span class="p">,</span> <span class="p">{})</span>
+ <span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s2">"q"</span><span class="p">,</span> <span class="kc">None</span><span class="p">)</span>
+ <span class="k">else</span> <span class="s2">"q3max"</span><span class="p">,</span>
+ <span class="p">],</span>
+ <span class="n">probdist</span><span class="o">=</span><span class="mi">1</span><span class="p">,</span>
+ <span class="n">gridtype</span><span class="o">=</span><span class="s2">"centred"</span><span class="p">,</span>
+ <span class="n">dphasevol</span><span class="o">=</span><span class="s2">"dq3"</span><span class="p">,</span>
+ <span class="n">precode</span><span class="o">=</span><span class="s2">"""</span>
+<span class="s2">M_4 = q3 * M_3</span>
+<span class="s2">sep3 = calc_sep_from_period((M_3), M_4, orbital_period_quadruple)</span>
+<span class="s2">eccentricity3=0</span>
+<span class="s2">"""</span><span class="p">,</span>
+ <span class="n">samplerfunc</span><span class="o">=</span><span class="bp">self</span><span class="o">.</span><span class="n">grid_options</span><span class="p">[</span><span class="s2">"Moe2017_options"</span><span class="p">][</span>
+ <span class="s2">"samplerfuncs"</span>
+ <span class="p">][</span><span class="s2">"M"</span><span class="p">][</span><span class="mi">3</span><span class="p">]</span>
+ <span class="ow">or</span> <span class="s2">"self.const_linear(</span><span class="si">{}</span><span class="s2">, </span><span class="si">{}</span><span class="s2">, </span><span class="si">{}</span><span class="s2">)"</span><span class="o">.</span><span class="n">format</span><span class="p">(</span>
+ <span class="bp">self</span><span class="o">.</span><span class="n">grid_options</span><span class="p">[</span><span class="s2">"Moe2017_options"</span><span class="p">][</span><span class="s2">"ranges"</span><span class="p">][</span><span class="s2">"q"</span><span class="p">][</span><span class="mi">0</span><span class="p">]</span>
+ <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">grid_options</span><span class="p">[</span><span class="s2">"Moe2017_options"</span><span class="p">]</span>
+ <span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s2">"ranges"</span><span class="p">,</span> <span class="p">{})</span>
+ <span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s2">"q"</span><span class="p">,</span> <span class="kc">None</span><span class="p">)</span>
+ <span class="k">else</span> <span class="s2">"options['Mmin']/(M_3)"</span><span class="p">,</span>
+ <span class="bp">self</span><span class="o">.</span><span class="n">grid_options</span><span class="p">[</span><span class="s2">"Moe2017_options"</span><span class="p">][</span><span class="s2">"ranges"</span><span class="p">][</span><span class="s2">"q"</span><span class="p">][</span><span class="mi">1</span><span class="p">]</span>
+ <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">grid_options</span><span class="p">[</span><span class="s2">"Moe2017_options"</span><span class="p">]</span>
+ <span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s2">"ranges"</span><span class="p">,</span> <span class="p">{})</span>
+ <span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s2">"q"</span><span class="p">,</span> <span class="kc">None</span><span class="p">)</span>
+ <span class="k">else</span> <span class="s2">"q3max"</span><span class="p">,</span>
+ <span class="bp">self</span><span class="o">.</span><span class="n">grid_options</span><span class="p">[</span><span class="s2">"Moe2017_options"</span><span class="p">][</span><span class="s2">"resolutions"</span><span class="p">][</span><span class="s2">"M"</span><span class="p">][</span><span class="mi">2</span><span class="p">],</span>
+ <span class="p">),</span>
+ <span class="p">)</span>
+
+ <span class="c1"># (optional) triples: eccentricity</span>
+ <span class="k">if</span> <span class="p">(</span>
+ <span class="bp">self</span><span class="o">.</span><span class="n">grid_options</span><span class="p">[</span><span class="s2">"Moe2017_options"</span><span class="p">][</span><span class="s2">"resolutions"</span><span class="p">][</span><span class="s2">"ecc"</span><span class="p">][</span><span class="mi">2</span><span class="p">]</span>
+ <span class="o">></span> <span class="mi">0</span>
+ <span class="p">):</span>
+ <span class="bp">self</span><span class="o">.</span><span class="n">add_grid_variable</span><span class="p">(</span>
+ <span class="n">name</span><span class="o">=</span><span class="s2">"ecc3"</span><span class="p">,</span>
+ <span class="n">parameter_name</span><span class="o">=</span><span class="s2">"eccentricity3"</span><span class="p">,</span>
+ <span class="n">longname</span><span class="o">=</span><span class="s2">"Eccentricity of the triple+quadruple/outer binary"</span><span class="p">,</span>
+ <span class="n">probdist</span><span class="o">=</span><span class="mi">1</span><span class="p">,</span>
+ <span class="n">gridtype</span><span class="o">=</span><span class="s2">"centred"</span><span class="p">,</span>
+ <span class="n">dphasevol</span><span class="o">=</span><span class="s2">"decc3"</span><span class="p">,</span>
+ <span class="n">precode</span><span class="o">=</span><span class="s2">"eccentricity3=ecc3"</span><span class="p">,</span>
+ <span class="n">valuerange</span><span class="o">=</span><span class="p">[</span>
+ <span class="bp">self</span><span class="o">.</span><span class="n">grid_options</span><span class="p">[</span><span class="s2">"Moe2017_options"</span><span class="p">][</span><span class="s2">"ranges"</span><span class="p">][</span><span class="s2">"ecc"</span><span class="p">][</span>
+ <span class="mi">0</span>
+ <span class="p">],</span> <span class="c1"># Just fail if not defined.</span>
+ <span class="bp">self</span><span class="o">.</span><span class="n">grid_options</span><span class="p">[</span><span class="s2">"Moe2017_options"</span><span class="p">][</span><span class="s2">"ranges"</span><span class="p">][</span><span class="s2">"ecc"</span><span class="p">][</span>
+ <span class="mi">1</span>
+ <span class="p">],</span>
+ <span class="p">],</span>
+ <span class="n">samplerfunc</span><span class="o">=</span><span class="bp">self</span><span class="o">.</span><span class="n">grid_options</span><span class="p">[</span><span class="s2">"Moe2017_options"</span><span class="p">][</span>
+ <span class="s2">"samplerfuncs"</span>
+ <span class="p">][</span><span class="s2">"ecc"</span><span class="p">][</span><span class="mi">2</span><span class="p">]</span>
+ <span class="ow">or</span> <span class="s2">"self.const_linear(</span><span class="si">{}</span><span class="s2">, </span><span class="si">{}</span><span class="s2">, </span><span class="si">{}</span><span class="s2">)"</span><span class="o">.</span><span class="n">format</span><span class="p">(</span>
+ <span class="bp">self</span><span class="o">.</span><span class="n">grid_options</span><span class="p">[</span><span class="s2">"Moe2017_options"</span><span class="p">][</span><span class="s2">"ranges"</span><span class="p">][</span><span class="s2">"ecc"</span><span class="p">][</span>
+ <span class="mi">0</span>
+ <span class="p">],</span> <span class="c1"># Just fail if not defined.</span>
+ <span class="bp">self</span><span class="o">.</span><span class="n">grid_options</span><span class="p">[</span><span class="s2">"Moe2017_options"</span><span class="p">][</span><span class="s2">"ranges"</span><span class="p">][</span><span class="s2">"ecc"</span><span class="p">][</span>
+ <span class="mi">1</span>
+ <span class="p">],</span>
+ <span class="bp">self</span><span class="o">.</span><span class="n">grid_options</span><span class="p">[</span><span class="s2">"Moe2017_options"</span><span class="p">][</span><span class="s2">"resolutions"</span><span class="p">][</span>
+ <span class="s2">"ecc"</span>
+ <span class="p">][</span><span class="mi">2</span><span class="p">],</span>
+ <span class="p">),</span>
+ <span class="p">)</span>
+
+ <span class="c1"># Now we are at the last part.</span>
+ <span class="c1"># Here we should combine all the information that we calculate and update the options</span>
+ <span class="c1"># dictionary. This will then be passed to the Moe_di_Stefano_2017_pdf to calculate</span>
+ <span class="c1"># the real probability. The trick we use is to strip the options_dict as a string</span>
+ <span class="c1"># and add some keys to it:</span>
+
+ <span class="n">updated_options</span> <span class="o">=</span> <span class="s2">"{{</span><span class="si">{}</span><span class="s2">, </span><span class="si">{}</span><span class="s2">, </span><span class="si">{}</span><span class="s2">, </span><span class="si">{}</span><span class="s2">, </span><span class="si">{}</span><span class="s2">, </span><span class="si">{}</span><span class="s2">, </span><span class="si">{}</span><span class="s2">, </span><span class="si">{}</span><span class="s2">, </span><span class="si">{}</span><span class="s2">, </span><span class="si">{}</span><span class="s2">, </span><span class="si">{}</span><span class="s2">, </span><span class="si">{}</span><span class="s2">}}"</span><span class="o">.</span><span class="n">format</span><span class="p">(</span>
+ <span class="nb">str</span><span class="p">(</span><span class="nb">dict</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">grid_options</span><span class="p">[</span><span class="s2">"Moe2017_options"</span><span class="p">]))[</span><span class="mi">1</span><span class="p">:</span><span class="o">-</span><span class="mi">1</span><span class="p">],</span>
+ <span class="s1">'"multiplicity": multiplicity'</span><span class="p">,</span>
+ <span class="s1">'"M_1": M_1'</span><span class="p">,</span>
+ <span class="s1">'"M_2": M_2'</span><span class="p">,</span>
+ <span class="s1">'"M_3": M_3'</span><span class="p">,</span>
+ <span class="s1">'"M_4": M_4'</span><span class="p">,</span>
+ <span class="s1">'"P": orbital_period'</span><span class="p">,</span>
+ <span class="s1">'"P2": orbital_period_triple'</span><span class="p">,</span>
+ <span class="s1">'"P3": orbital_period_quadruple'</span><span class="p">,</span>
+ <span class="s1">'"ecc": eccentricity'</span><span class="p">,</span>
+ <span class="s1">'"ecc2": eccentricity2'</span><span class="p">,</span>
+ <span class="s1">'"ecc3": eccentricity3'</span><span class="p">,</span>
+ <span class="p">)</span>
+
+ <span class="n">probdist_addition</span> <span class="o">=</span> <span class="s2">"self.Moe_di_Stefano_2017_pdf(</span><span class="si">{}</span><span class="s2">, verbosity=self.grid_options['verbosity'])['total_probdens']"</span><span class="o">.</span><span class="n">format</span><span class="p">(</span>
+ <span class="n">updated_options</span>
+ <span class="p">)</span>
+
+ <span class="c1"># and finally the probability calculator</span>
+ <span class="bp">self</span><span class="o">.</span><span class="n">grid_options</span><span class="p">[</span><span class="s2">"_grid_variables"</span><span class="p">][</span><span class="bp">self</span><span class="o">.</span><span class="n">_last_grid_variable</span><span class="p">()][</span>
+ <span class="s2">"probdist"</span>
+ <span class="p">]</span> <span class="o">=</span> <span class="n">probdist_addition</span>
+
+ <span class="n">verbose_print</span><span class="p">(</span>
+ <span class="s2">"</span><span class="se">\t</span><span class="s2">Moe_di_Stefano_2017: Added final call to the pdf function"</span><span class="p">,</span>
+ <span class="bp">self</span><span class="o">.</span><span class="n">grid_options</span><span class="p">[</span><span class="s2">"verbosity"</span><span class="p">],</span>
+ <span class="n">_MOE2017_VERBOSITY_LEVEL</span><span class="p">,</span>
+ <span class="p">)</span>
+
+ <span class="c1"># Signal that the MOE2017 grid has been set</span>
+ <span class="bp">self</span><span class="o">.</span><span class="n">grid_options</span><span class="p">[</span><span class="s2">"_set_Moe2017_grid"</span><span class="p">]</span> <span class="o">=</span> <span class="kc">True</span>
+
+ <span class="c1">################################################################################################</span>
+<div class="viewcode-block" id="Moe_di_Stefano_2017.Moe_di_Stefano_2017"><a class="viewcode-back" href="../../../../population_extensions/Moe_di_Stefano_2017.html#binarycpython.utils.population_extensions.Moe_di_Stefano_2017.Moe_di_Stefano_2017.Moe_di_Stefano_2017">[docs]</a> <span class="k">def</span> <span class="nf">Moe_di_Stefano_2017</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">options</span><span class="o">=</span><span class="kc">None</span><span class="p">):</span>
+ <span class="sd">"""</span>
+<span class="sd"> Function to handle setting the user input settings,</span>
+<span class="sd"> set up the data and load that into interpolators and</span>
+<span class="sd"> then set the distribution functions</span>
+
+<span class="sd"> Takes a dictionary as its only argument</span>
+<span class="sd"> """</span>
+
+ <span class="n">default_options</span> <span class="o">=</span> <span class="p">{</span>
+ <span class="s2">"apply settings"</span><span class="p">:</span> <span class="kc">True</span><span class="p">,</span>
+ <span class="s2">"setup grid"</span><span class="p">:</span> <span class="kc">True</span><span class="p">,</span>
+ <span class="s2">"load data"</span><span class="p">:</span> <span class="kc">True</span><span class="p">,</span>
+ <span class="s2">"clean cache"</span><span class="p">:</span> <span class="kc">False</span><span class="p">,</span>
+ <span class="s2">"clean load flag"</span><span class="p">:</span> <span class="kc">False</span><span class="p">,</span>
+ <span class="s2">"clean all"</span><span class="p">:</span> <span class="kc">False</span><span class="p">,</span>
+ <span class="p">}</span>
+
+ <span class="k">if</span> <span class="ow">not</span> <span class="n">options</span><span class="p">:</span>
+ <span class="n">options</span> <span class="o">=</span> <span class="p">{}</span>
+ <span class="n">options</span> <span class="o">=</span> <span class="n">update_dicts</span><span class="p">(</span><span class="n">default_options</span><span class="p">,</span> <span class="n">options</span><span class="p">)</span>
+
+ <span class="c1"># clean cache?</span>
+ <span class="k">if</span> <span class="n">options</span><span class="p">[</span><span class="s2">"clean all"</span><span class="p">]</span> <span class="ow">or</span> <span class="n">options</span><span class="p">[</span><span class="s2">"clean cache"</span><span class="p">]:</span>
+ <span class="n">Moecache</span><span class="o">.</span><span class="n">clear</span><span class="p">()</span>
+
+ <span class="k">if</span> <span class="n">options</span><span class="p">[</span><span class="s2">"clean all"</span><span class="p">]</span> <span class="ow">or</span> <span class="n">options</span><span class="p">[</span><span class="s2">"clean load flag"</span><span class="p">]:</span>
+ <span class="bp">self</span><span class="o">.</span><span class="n">grid_options</span><span class="p">[</span><span class="s2">"_loaded_Moe2017_data"</span><span class="p">]</span> <span class="o">=</span> <span class="kc">False</span>
+
+ <span class="c1"># Set the user input</span>
+ <span class="k">if</span> <span class="n">options</span><span class="p">[</span><span class="s2">"apply settings"</span><span class="p">]:</span>
+ <span class="bp">self</span><span class="o">.</span><span class="n">set_moe_di_stefano_settings</span><span class="p">(</span><span class="n">options</span><span class="o">=</span><span class="n">options</span><span class="p">)</span>
+
+ <span class="c1"># Load the data</span>
+ <span class="k">if</span> <span class="n">options</span><span class="p">[</span><span class="s2">"load data"</span><span class="p">]:</span>
+ <span class="bp">self</span><span class="o">.</span><span class="n">_load_moe_di_stefano_data</span><span class="p">()</span>
+
+ <span class="c1"># construct the grid here</span>
+ <span class="k">if</span> <span class="n">options</span><span class="p">[</span><span class="s2">"setup grid"</span><span class="p">]:</span>
+ <span class="bp">self</span><span class="o">.</span><span class="n">_set_moe_di_stefano_distributions</span><span class="p">()</span></div>
+
+ <span class="k">def</span> <span class="nf">_clean_interpolators</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
+ <span class="sd">"""</span>
+<span class="sd"> Function to clean up the interpolators after a run</span>
+
+<span class="sd"> We look in the Moecache global variable for items that are interpolators.</span>
+<span class="sd"> Should be called by the general cleanup function AND the thread cleanup function</span>
+<span class="sd"> """</span>
+
+ <span class="n">interpolator_keys</span> <span class="o">=</span> <span class="p">[]</span>
+ <span class="k">for</span> <span class="n">key</span><span class="p">,</span> <span class="n">value</span> <span class="ow">in</span> <span class="n">Moecache</span><span class="o">.</span><span class="n">items</span><span class="p">():</span>
+ <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">value</span><span class="p">,</span> <span class="n">py_rinterpolate</span><span class="o">.</span><span class="n">Rinterpolate</span><span class="p">):</span>
+ <span class="n">interpolator_keys</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">key</span><span class="p">)</span>
+
+ <span class="k">for</span> <span class="n">key</span> <span class="ow">in</span> <span class="n">interpolator_keys</span><span class="p">:</span>
+ <span class="n">Moecache</span><span class="p">[</span><span class="n">key</span><span class="p">]</span><span class="o">.</span><span class="n">destroy</span><span class="p">()</span>
+ <span class="k">del</span> <span class="n">Moecache</span><span class="p">[</span><span class="n">key</span><span class="p">]</span>
+ <span class="n">gc</span><span class="o">.</span><span class="n">collect</span><span class="p">()</span>
+
+ <span class="k">def</span> <span class="nf">_calculate_multiplicity_fraction</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">system_dict</span><span class="p">):</span>
+ <span class="sd">"""</span>
+<span class="sd"> Function to calculate multiplicity fraction</span>
+
+<span class="sd"> Makes use of the self.bse_options['multiplicity'] value. If its not set, it will raise an error</span>
+
+<span class="sd"> grid_options['multiplicity_fraction_function'] will be checked for the choice</span>
+
+<span class="sd"> TODO: add option to put a manual binary fraction in here (solve via negative numbers being the functions)</span>
+<span class="sd"> """</span>
+
+ <span class="c1"># Just return 1 if no option has been chosen</span>
+ <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">grid_options</span><span class="p">[</span><span class="s2">"multiplicity_fraction_function"</span><span class="p">]</span> <span class="ow">in</span> <span class="p">[</span><span class="mi">0</span><span class="p">,</span> <span class="s2">"None"</span><span class="p">]:</span>
+ <span class="n">verbose_print</span><span class="p">(</span>
+ <span class="s2">"_calculate_multiplicity_fraction: Chosen not to use any multiplicity fraction."</span><span class="p">,</span>
+ <span class="bp">self</span><span class="o">.</span><span class="n">grid_options</span><span class="p">[</span><span class="s2">"verbosity"</span><span class="p">],</span>
+ <span class="mi">3</span><span class="p">,</span>
+ <span class="p">)</span>
+
+ <span class="k">return</span> <span class="mi">1</span>
+
+ <span class="c1"># Raise an error if the multiplicity is not set</span>
+ <span class="k">if</span> <span class="ow">not</span> <span class="n">system_dict</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s2">"multiplicity"</span><span class="p">,</span> <span class="kc">None</span><span class="p">):</span>
+ <span class="n">msg</span> <span class="o">=</span> <span class="s2">"Multiplicity value has not been set. When using a specific multiplicity fraction function please set the multiplicity"</span>
+ <span class="k">raise</span> <span class="ne">ValueError</span><span class="p">(</span><span class="n">msg</span><span class="p">)</span>
+
+ <span class="c1"># Go over the chosen options</span>
+ <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">grid_options</span><span class="p">[</span><span class="s2">"multiplicity_fraction_function"</span><span class="p">]</span> <span class="ow">in</span> <span class="p">[</span><span class="mi">1</span><span class="p">,</span> <span class="s2">"Arenou2010"</span><span class="p">]:</span>
+ <span class="c1"># Arenou 2010 will be used</span>
+ <span class="n">verbose_print</span><span class="p">(</span>
+ <span class="s2">"_calculate_multiplicity_fraction: Using Arenou 2010 to calculate multiplicity fractions"</span><span class="p">,</span>
+ <span class="bp">self</span><span class="o">.</span><span class="n">grid_options</span><span class="p">[</span><span class="s2">"verbosity"</span><span class="p">],</span>
+ <span class="mi">3</span><span class="p">,</span>
+ <span class="p">)</span>
+
+ <span class="n">binary_fraction</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">Arenou2010_binary_fraction</span><span class="p">(</span><span class="n">system_dict</span><span class="p">[</span><span class="s2">"M_1"</span><span class="p">])</span>
+ <span class="n">multiplicity_fraction_dict</span> <span class="o">=</span> <span class="p">{</span>
+ <span class="mi">1</span><span class="p">:</span> <span class="mi">1</span> <span class="o">-</span> <span class="n">binary_fraction</span><span class="p">,</span>
+ <span class="mi">2</span><span class="p">:</span> <span class="n">binary_fraction</span><span class="p">,</span>
+ <span class="mi">3</span><span class="p">:</span> <span class="mi">0</span><span class="p">,</span>
+ <span class="mi">4</span><span class="p">:</span> <span class="mi">0</span><span class="p">,</span>
+ <span class="p">}</span>
+
+ <span class="k">elif</span> <span class="bp">self</span><span class="o">.</span><span class="n">grid_options</span><span class="p">[</span><span class="s2">"multiplicity_fraction_function"</span><span class="p">]</span> <span class="ow">in</span> <span class="p">[</span><span class="mi">2</span><span class="p">,</span> <span class="s2">"Raghavan2010"</span><span class="p">]:</span>
+ <span class="c1"># Raghavan 2010 will be used</span>
+ <span class="n">verbose_print</span><span class="p">(</span>
+ <span class="s2">"_calculate_multiplicity_fraction: Using Raghavan (2010) to calculate multiplicity fractions"</span><span class="p">,</span>
+ <span class="bp">self</span><span class="o">.</span><span class="n">grid_options</span><span class="p">[</span><span class="s2">"verbosity"</span><span class="p">],</span>
+ <span class="mi">3</span><span class="p">,</span>
+ <span class="p">)</span>
+
+ <span class="n">binary_fraction</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">raghavan2010_binary_fraction</span><span class="p">(</span><span class="n">system_dict</span><span class="p">[</span><span class="s2">"M_1"</span><span class="p">])</span>
+ <span class="n">multiplicity_fraction_dict</span> <span class="o">=</span> <span class="p">{</span>
+ <span class="mi">1</span><span class="p">:</span> <span class="mi">1</span> <span class="o">-</span> <span class="n">binary_fraction</span><span class="p">,</span>
+ <span class="mi">2</span><span class="p">:</span> <span class="n">binary_fraction</span><span class="p">,</span>
+ <span class="mi">3</span><span class="p">:</span> <span class="mi">0</span><span class="p">,</span>
+ <span class="mi">4</span><span class="p">:</span> <span class="mi">0</span><span class="p">,</span>
+ <span class="p">}</span>
+
+ <span class="k">elif</span> <span class="bp">self</span><span class="o">.</span><span class="n">grid_options</span><span class="p">[</span><span class="s2">"multiplicity_fraction_function"</span><span class="p">]</span> <span class="ow">in</span> <span class="p">[</span><span class="mi">3</span><span class="p">,</span> <span class="s2">"Moe2017"</span><span class="p">]:</span>
+ <span class="c1"># We need to check several things now here:</span>
+
+ <span class="c1"># First, are the options for the MOE2017 grid set? On start it is filled with the default settings</span>
+ <span class="k">if</span> <span class="ow">not</span> <span class="bp">self</span><span class="o">.</span><span class="n">grid_options</span><span class="p">[</span><span class="s2">"Moe2017_options"</span><span class="p">]:</span>
+ <span class="n">msg</span> <span class="o">=</span> <span class="s2">"The MOE2017 options do not seem to be set properly. The value is </span><span class="si">{}</span><span class="s2">"</span><span class="o">.</span><span class="n">format</span><span class="p">(</span>
+ <span class="bp">self</span><span class="o">.</span><span class="n">grid_options</span><span class="p">[</span><span class="s2">"Moe2017_options"</span><span class="p">]</span>
+ <span class="p">)</span>
+ <span class="k">raise</span> <span class="ne">ValueError</span><span class="p">(</span><span class="n">msg</span><span class="p">)</span>
+
+ <span class="c1"># Second: is the Moecache filled.</span>
+ <span class="k">if</span> <span class="ow">not</span> <span class="n">Moecache</span><span class="p">:</span>
+ <span class="n">verbose_print</span><span class="p">(</span>
+ <span class="s2">"_calculate_multiplicity_fraction: Moecache is empty. It needs to be filled with the data for the interpolators. Loading the data now"</span><span class="p">,</span>
+ <span class="bp">self</span><span class="o">.</span><span class="n">grid_options</span><span class="p">[</span><span class="s2">"verbosity"</span><span class="p">],</span>
+ <span class="mi">3</span><span class="p">,</span>
+ <span class="p">)</span>
+
+ <span class="c1"># Load the data</span>
+ <span class="bp">self</span><span class="o">.</span><span class="n">_load_moe_di_stefano_data</span><span class="p">()</span>
+
+ <span class="c1"># record the prev value</span>
+ <span class="n">prev_M1_value_ms</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">grid_options</span><span class="p">[</span><span class="s2">"Moe2017_options"</span><span class="p">]</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s2">"M_1"</span><span class="p">,</span> <span class="kc">None</span><span class="p">)</span>
+
+ <span class="c1"># Set value of M1 of the current system</span>
+ <span class="bp">self</span><span class="o">.</span><span class="n">grid_options</span><span class="p">[</span><span class="s2">"Moe2017_options"</span><span class="p">][</span><span class="s2">"M_1"</span><span class="p">]</span> <span class="o">=</span> <span class="n">system_dict</span><span class="p">[</span><span class="s2">"M_1"</span><span class="p">]</span>
+
+ <span class="c1"># Calculate the multiplicity fraction</span>
+ <span class="n">multiplicity_fraction_list</span> <span class="o">=</span> <span class="p">(</span>
+ <span class="bp">self</span><span class="o">.</span><span class="n">Moe_di_Stefano_2017_multiplicity_fractions</span><span class="p">(</span>
+ <span class="bp">self</span><span class="o">.</span><span class="n">grid_options</span><span class="p">[</span><span class="s2">"Moe2017_options"</span><span class="p">],</span> <span class="bp">self</span><span class="o">.</span><span class="n">grid_options</span><span class="p">[</span><span class="s2">"verbosity"</span><span class="p">]</span>
+ <span class="p">)</span>
+ <span class="p">)</span>
+
+ <span class="c1"># Turn into dict</span>
+ <span class="n">multiplicity_fraction_dict</span> <span class="o">=</span> <span class="p">{</span>
+ <span class="n">el</span> <span class="o">+</span> <span class="mi">1</span><span class="p">:</span> <span class="n">multiplicity_fraction_list</span><span class="p">[</span><span class="n">el</span><span class="p">]</span>
+ <span class="k">for</span> <span class="n">el</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="nb">len</span><span class="p">(</span><span class="n">multiplicity_fraction_list</span><span class="p">))</span>
+ <span class="p">}</span>
+
+ <span class="c1"># Set the prev value back</span>
+ <span class="bp">self</span><span class="o">.</span><span class="n">grid_options</span><span class="p">[</span><span class="s2">"Moe2017_options"</span><span class="p">][</span><span class="s2">"M_1"</span><span class="p">]</span> <span class="o">=</span> <span class="n">prev_M1_value_ms</span>
+
+ <span class="c1"># we don't know what to do next</span>
+ <span class="k">else</span><span class="p">:</span>
+ <span class="n">msg</span> <span class="o">=</span> <span class="s2">"Chosen value for the multiplicity fraction function is not known."</span>
+ <span class="k">raise</span> <span class="ne">ValueError</span><span class="p">(</span><span class="n">msg</span><span class="p">)</span>
+
+ <span class="c1"># To make sure we normalize the dictionary</span>
+ <span class="n">multiplicity_fraction_dict</span> <span class="o">=</span> <span class="n">normalize_dict</span><span class="p">(</span>
+ <span class="n">multiplicity_fraction_dict</span><span class="p">,</span> <span class="n">verbosity</span><span class="o">=</span><span class="bp">self</span><span class="o">.</span><span class="n">grid_options</span><span class="p">[</span><span class="s2">"verbosity"</span><span class="p">]</span>
+ <span class="p">)</span>
+
+ <span class="n">verbose_print</span><span class="p">(</span>
+ <span class="s2">"Multiplicity: </span><span class="si">{}</span><span class="s2"> multiplicity_fraction: </span><span class="si">{}</span><span class="s2">"</span><span class="o">.</span><span class="n">format</span><span class="p">(</span>
+ <span class="n">system_dict</span><span class="p">[</span><span class="s2">"multiplicity"</span><span class="p">],</span>
+ <span class="n">multiplicity_fraction_dict</span><span class="p">[</span><span class="n">system_dict</span><span class="p">[</span><span class="s2">"multiplicity"</span><span class="p">]],</span>
+ <span class="p">),</span>
+ <span class="bp">self</span><span class="o">.</span><span class="n">grid_options</span><span class="p">[</span><span class="s2">"verbosity"</span><span class="p">],</span>
+ <span class="mi">3</span><span class="p">,</span>
+ <span class="p">)</span>
+
+ <span class="k">return</span> <span class="n">multiplicity_fraction_dict</span><span class="p">[</span><span class="n">system_dict</span><span class="p">[</span><span class="s2">"multiplicity"</span><span class="p">]]</span>
+
+<div class="viewcode-block" id="Moe_di_Stefano_2017.get_moe_di_stefano_dataset"><a class="viewcode-back" href="../../../../population_extensions/Moe_di_Stefano_2017.html#binarycpython.utils.population_extensions.Moe_di_Stefano_2017.Moe_di_Stefano_2017.get_moe_di_stefano_dataset">[docs]</a> <span class="k">def</span> <span class="nf">get_moe_di_stefano_dataset</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">options</span><span class="p">,</span> <span class="n">verbosity</span><span class="o">=</span><span class="mi">0</span><span class="p">):</span>
+ <span class="sd">"""</span>
+<span class="sd"> Function to get the default Moe and di Stefano dataset or accept a user input.</span>
+
+<span class="sd"> Returns a dict containing the (JSON) data.</span>
+<span class="sd"> """</span>
+
+ <span class="n">json_data</span> <span class="o">=</span> <span class="kc">None</span>
+
+ <span class="k">if</span> <span class="s2">"JSON"</span> <span class="ow">in</span> <span class="n">options</span><span class="p">:</span>
+ <span class="c1"># use the JSON data passed in</span>
+ <span class="n">json_data</span> <span class="o">=</span> <span class="n">options</span><span class="p">[</span><span class="s2">"JSON"</span><span class="p">]</span>
+
+ <span class="k">elif</span> <span class="s2">"file"</span> <span class="ow">in</span> <span class="n">options</span><span class="p">:</span>
+ <span class="c1"># use the file passed in, if provided</span>
+ <span class="k">if</span> <span class="ow">not</span> <span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">isfile</span><span class="p">(</span><span class="n">options</span><span class="p">[</span><span class="s2">"file"</span><span class="p">]):</span>
+ <span class="n">verbose_print</span><span class="p">(</span>
+ <span class="s2">"The provided 'file' Moe and de Stefano JSON file does not seem to exist at </span><span class="si">{}</span><span class="s2">"</span><span class="o">.</span><span class="n">format</span><span class="p">(</span>
+ <span class="n">options</span><span class="p">[</span><span class="s2">"file"</span><span class="p">]</span>
+ <span class="p">),</span>
+ <span class="n">verbosity</span><span class="p">,</span>
+ <span class="mi">1</span><span class="p">,</span>
+ <span class="p">)</span>
+
+ <span class="k">raise</span> <span class="ne">ValueError</span>
+ <span class="k">if</span> <span class="ow">not</span> <span class="n">options</span><span class="p">[</span><span class="s2">"file"</span><span class="p">]</span><span class="o">.</span><span class="n">endswith</span><span class="p">(</span><span class="s2">".json"</span><span class="p">):</span>
+ <span class="n">verbose_print</span><span class="p">(</span>
+ <span class="s2">"Provided filename is not a json file"</span><span class="p">,</span>
+ <span class="n">verbosity</span><span class="p">,</span>
+ <span class="mi">1</span><span class="p">,</span>
+ <span class="p">)</span>
+
+ <span class="k">else</span><span class="p">:</span>
+ <span class="c1"># Read input data and Clean up the data if there are white spaces around the keys</span>
+ <span class="k">with</span> <span class="nb">open</span><span class="p">(</span><span class="n">options</span><span class="p">[</span><span class="s2">"file"</span><span class="p">],</span> <span class="s2">"r"</span><span class="p">,</span> <span class="n">encoding</span><span class="o">=</span><span class="s2">"utf-8"</span><span class="p">)</span> <span class="k">as</span> <span class="n">data_filehandle</span><span class="p">:</span>
+ <span class="n">datafile_data</span> <span class="o">=</span> <span class="n">data_filehandle</span><span class="o">.</span><span class="n">read</span><span class="p">()</span>
+ <span class="n">datafile_data</span> <span class="o">=</span> <span class="n">datafile_data</span><span class="o">.</span><span class="n">replace</span><span class="p">(</span><span class="s1">'" '</span><span class="p">,</span> <span class="s1">'"'</span><span class="p">)</span>
+ <span class="n">datafile_data</span> <span class="o">=</span> <span class="n">datafile_data</span><span class="o">.</span><span class="n">replace</span><span class="p">(</span><span class="s1">' "'</span><span class="p">,</span> <span class="s1">'"'</span><span class="p">)</span>
+ <span class="n">datafile_data</span> <span class="o">=</span> <span class="n">datafile_data</span><span class="o">.</span><span class="n">replace</span><span class="p">(</span><span class="s1">' "'</span><span class="p">,</span> <span class="s1">'"'</span><span class="p">)</span>
+ <span class="n">json_data</span> <span class="o">=</span> <span class="n">json</span><span class="o">.</span><span class="n">loads</span><span class="p">(</span><span class="n">datafile_data</span><span class="p">)</span>
+
+ <span class="k">if</span> <span class="ow">not</span> <span class="n">json_data</span><span class="p">:</span>
+ <span class="c1"># no JSON data or filename given, use the default 2017 dataset</span>
+ <span class="n">verbose_print</span><span class="p">(</span>
+ <span class="s2">"Using the default Moe and de Stefano 2017 datafile"</span><span class="p">,</span>
+ <span class="n">verbosity</span><span class="p">,</span>
+ <span class="mi">1</span><span class="p">,</span>
+ <span class="p">)</span>
+ <span class="n">json_data</span> <span class="o">=</span> <span class="n">copy</span><span class="o">.</span><span class="n">deepcopy</span><span class="p">(</span><span class="n">moe_di_stefano_2017_data</span><span class="o">.</span><span class="n">moe_di_stefano_2017_data</span><span class="p">)</span>
+
+ <span class="k">return</span> <span class="n">json_data</span></div>
+
+<div class="viewcode-block" id="Moe_di_Stefano_2017.get_Moe_di_Stefano_2017_default_options"><a class="viewcode-back" href="../../../../population_extensions/Moe_di_Stefano_2017.html#binarycpython.utils.population_extensions.Moe_di_Stefano_2017.Moe_di_Stefano_2017.get_Moe_di_Stefano_2017_default_options">[docs]</a> <span class="k">def</span> <span class="nf">get_Moe_di_Stefano_2017_default_options</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
+ <span class="sd">"""</span>
+<span class="sd"> Function that returns the default options for the Moe & diStefano grid options</span>
+<span class="sd"> """</span>
+
+ <span class="k">return</span> <span class="p">{</span>
+ <span class="c1"># place holder for the JSON data to be used if a file</span>
+ <span class="c1"># isn't specified</span>
+ <span class="s2">"JSON"</span><span class="p">:</span> <span class="kc">None</span><span class="p">,</span>
+ <span class="c1"># resolution data</span>
+ <span class="s2">"resolutions"</span><span class="p">:</span> <span class="p">{</span>
+ <span class="s2">"M"</span><span class="p">:</span> <span class="p">[</span>
+ <span class="mi">20</span><span class="p">,</span> <span class="c1"># M1</span>
+ <span class="mi">20</span><span class="p">,</span> <span class="c1"># M2 (i.e. q)</span>
+ <span class="mi">0</span><span class="p">,</span> <span class="c1"># M3 currently unused</span>
+ <span class="mi">0</span><span class="p">,</span> <span class="c1"># M4 currently unused</span>
+ <span class="p">],</span>
+ <span class="s2">"logP"</span><span class="p">:</span> <span class="p">[</span>
+ <span class="mi">20</span><span class="p">,</span> <span class="c1"># P2 (binary period)</span>
+ <span class="mi">0</span><span class="p">,</span> <span class="c1"># P3 (triple period) currently unused</span>
+ <span class="mi">0</span><span class="p">,</span> <span class="c1"># P4 (quadruple period) currently unused</span>
+ <span class="p">],</span>
+ <span class="s2">"ecc"</span><span class="p">:</span> <span class="p">[</span>
+ <span class="mi">10</span><span class="p">,</span> <span class="c1"># e (binary eccentricity)</span>
+ <span class="mi">0</span><span class="p">,</span> <span class="c1"># e2 (triple eccentricity) currently unused</span>
+ <span class="mi">0</span><span class="p">,</span> <span class="c1"># e3 (quadruple eccentricity) currently unused</span>
+ <span class="p">],</span>
+ <span class="p">},</span>
+ <span class="s2">"samplerfuncs"</span><span class="p">:</span> <span class="p">{</span>
+ <span class="s2">"M"</span><span class="p">:</span> <span class="p">[</span><span class="kc">None</span><span class="p">,</span> <span class="kc">None</span><span class="p">,</span> <span class="kc">None</span><span class="p">,</span> <span class="kc">None</span><span class="p">],</span>
+ <span class="s2">"logP"</span><span class="p">:</span> <span class="p">[</span><span class="kc">None</span><span class="p">,</span> <span class="kc">None</span><span class="p">,</span> <span class="kc">None</span><span class="p">],</span>
+ <span class="s2">"ecc"</span><span class="p">:</span> <span class="p">[</span><span class="kc">None</span><span class="p">,</span> <span class="kc">None</span><span class="p">,</span> <span class="kc">None</span><span class="p">],</span>
+ <span class="p">},</span>
+ <span class="s2">"ranges"</span><span class="p">:</span> <span class="p">{</span>
+ <span class="c1"># stellar masses (Msun)</span>
+ <span class="s2">"M"</span><span class="p">:</span> <span class="p">[</span>
+ <span class="bp">self</span><span class="o">.</span><span class="n">minimum_stellar_mass</span><span class="p">()</span>
+ <span class="o">*</span> <span class="mf">1.05</span><span class="p">,</span> <span class="c1"># 0.08 is a tad bit above the minimum mass. Don't sample at 0.07, otherwise the first row of q values will have a phasevol of 0. Anything higher is fine.</span>
+ <span class="mf">80.0</span><span class="p">,</span> <span class="c1"># (rather arbitrary) upper mass cutoff</span>
+ <span class="p">],</span>
+ <span class="s2">"q"</span><span class="p">:</span> <span class="p">[</span>
+ <span class="kc">None</span><span class="p">,</span> <span class="c1"># artificial qmin : set to None to use default</span>
+ <span class="kc">None</span><span class="p">,</span> <span class="c1"># artificial qmax : set to None to use default</span>
+ <span class="p">],</span>
+ <span class="s2">"logP"</span><span class="p">:</span> <span class="p">[</span><span class="mf">0.0</span><span class="p">,</span> <span class="mf">8.0</span><span class="p">],</span> <span class="c1"># 0 = log10(1 day) # 8 = log10(10^8 days)</span>
+ <span class="s2">"ecc"</span><span class="p">:</span> <span class="p">[</span><span class="mf">0.0</span><span class="p">,</span> <span class="mf">0.99</span><span class="p">],</span>
+ <span class="p">},</span>
+ <span class="c1"># minimum stellar mass</span>
+ <span class="s2">"Mmin"</span><span class="p">:</span> <span class="bp">self</span><span class="o">.</span><span class="n">minimum_stellar_mass</span><span class="p">(),</span> <span class="c1"># We take the value that binary_c has set as the default</span>
+ <span class="c1"># multiplicity model (as a function of log10M1)</span>
+ <span class="c1">#</span>
+ <span class="c1"># You can use 'Poisson' which uses the system multiplicity</span>
+ <span class="c1"># given by Moe and maps this to single/binary/triple/quad</span>
+ <span class="c1"># fractions.</span>
+ <span class="c1">#</span>
+ <span class="c1"># Alternatively, 'data' takes the fractions directly</span>
+ <span class="c1"># from the data, but then triples and quadruples are</span>
+ <span class="c1"># combined (and there are NO quadruples).</span>
+ <span class="s2">"multiplicity_model"</span><span class="p">:</span> <span class="s2">"Poisson"</span><span class="p">,</span>
+ <span class="c1"># multiplicity modulator:</span>
+ <span class="c1"># [single, binary, triple, quadruple]</span>
+ <span class="c1">#</span>
+ <span class="c1"># e.g. [1,0,0,0] for single stars only</span>
+ <span class="c1"># [0,1,0,0] for binary stars only</span>
+ <span class="c1">#</span>
+ <span class="c1"># defaults to [1,1,0,0] i.e. all types</span>
+ <span class="c1">#</span>
+ <span class="s2">"multiplicity_modulator"</span><span class="p">:</span> <span class="p">[</span>
+ <span class="mi">1</span><span class="p">,</span> <span class="c1"># single</span>
+ <span class="mi">1</span><span class="p">,</span> <span class="c1"># binary</span>
+ <span class="mi">0</span><span class="p">,</span> <span class="c1"># triple</span>
+ <span class="mi">0</span><span class="p">,</span> <span class="c1"># quadruple</span>
+ <span class="p">],</span>
+ <span class="c1"># given a mix of multiplicities, you can either (noting that</span>
+ <span class="c1"># here (S,B,T,Q) = appropriate modulator * model(S,B,T,Q) )</span>
+ <span class="c1">#</span>
+ <span class="c1"># 'norm' : normalise so the whole population is 1.0</span>
+ <span class="c1"># after implementing the appropriate fractions</span>
+ <span class="c1"># S/(S+B+T+Q), B/(S+B+T+Q), T/(S+B+T+Q), Q/(S+B+T+Q)</span>
+ <span class="c1">#</span>
+ <span class="c1"># 'raw' : stick to what is predicted, i.e.</span>
+ <span class="c1"># S/(S+B+T+Q), B/(S+B+T+Q), T/(S+B+T+Q), Q/(S+B+T+Q)</span>
+ <span class="c1"># without normalisation</span>
+ <span class="c1"># (in which case the total probability < 1.0 unless</span>
+ <span class="c1"># all you use single, binary, triple and quadruple)</span>
+ <span class="c1">#</span>
+ <span class="c1"># 'merge' : e.g. if you only have single and binary,</span>
+ <span class="c1"># add the triples and quadruples to the binaries, so</span>
+ <span class="c1"># binaries represent all multiple systems</span>
+ <span class="c1"># ...</span>
+ <span class="c1"># *** this is canonical binary population synthesis ***</span>
+ <span class="c1">#</span>
+ <span class="c1"># Note: if multiplicity_modulator == [1,1,1,1] this</span>
+ <span class="c1"># option does nothing (equivalent to 'raw').</span>
+ <span class="c1">#</span>
+ <span class="c1">#</span>
+ <span class="c1"># note: if you only set one multiplicity_modulator</span>
+ <span class="c1"># to 1, and all the others to 0, then normalising</span>
+ <span class="c1"># will mean that you effectively have the same number</span>
+ <span class="c1"># of stars as single, binary, triple or quad (whichever</span>
+ <span class="c1"># is non-zero) i.e. the multiplicity fraction is ignored.</span>
+ <span class="c1"># This is probably not useful except for</span>
+ <span class="c1"># testing purposes or comparing to old grids.</span>
+ <span class="s2">"normalize_multiplicities"</span><span class="p">:</span> <span class="s2">"merge"</span><span class="p">,</span>
+ <span class="c1"># q extrapolation (below 0.15 and above 0.9) method. We can choose from ['flat', 'linear', 'plaw2', 'nolowq']</span>
+ <span class="s2">"q_low_extrapolation_method"</span><span class="p">:</span> <span class="s2">"linear"</span><span class="p">,</span>
+ <span class="s2">"q_high_extrapolation_method"</span><span class="p">:</span> <span class="s2">"linear"</span><span class="p">,</span>
+ <span class="p">}</span></div>
+
+<div class="viewcode-block" id="Moe_di_Stefano_2017.get_Moe_di_Stefano_2017_default_options_description"><a class="viewcode-back" href="../../../../population_extensions/Moe_di_Stefano_2017.html#binarycpython.utils.population_extensions.Moe_di_Stefano_2017.Moe_di_Stefano_2017.get_Moe_di_Stefano_2017_default_options_description">[docs]</a> <span class="k">def</span> <span class="nf">get_Moe_di_Stefano_2017_default_options_description</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
+ <span class="sd">"""</span>
+<span class="sd"> Function to return the descriptions for all the Moe & diStefano grid options</span>
+<span class="sd"> """</span>
+
+ <span class="k">return</span> <span class="p">{</span>
+ <span class="s2">"resolutions"</span><span class="p">:</span> <span class="s2">""</span><span class="p">,</span>
+ <span class="s2">"ranges"</span><span class="p">:</span> <span class="s2">""</span><span class="p">,</span>
+ <span class="s2">"Mmin"</span><span class="p">:</span> <span class="s2">"Minimum stellar mass"</span><span class="p">,</span>
+ <span class="s2">"multiplicity_model"</span><span class="p">:</span> <span class="s2">"""</span>
+<span class="s2"> multiplicity model (as a function of log10M1)</span>
+
+<span class="s2"> You can use 'Poisson' which uses the system multiplicity</span>
+<span class="s2"> given by Moe and maps this to single/binary/triple/quad</span>
+<span class="s2"> fractions.</span>
+
+<span class="s2"> Alternatively, 'data' takes the fractions directly</span>
+<span class="s2"> from the data, but then triples and quadruples are</span>
+<span class="s2"> combined (and there are NO quadruples).</span>
+<span class="s2"> """</span><span class="p">,</span>
+ <span class="s2">"multiplicity_modulator"</span><span class="p">:</span> <span class="s2">"""</span>
+<span class="s2"> [single, binary, triple, quadruple]</span>
+
+<span class="s2"> e.g. [1,0,0,0] for single stars only</span>
+<span class="s2"> [0,1,0,0] for binary stars only</span>
+
+<span class="s2"> defaults to [1,1,0,0] i.e. singles and binaries</span>
+<span class="s2"> """</span><span class="p">,</span>
+ <span class="s2">"normalize_multiplicities"</span><span class="p">:</span> <span class="s2">"""</span>
+<span class="s2"> 'norm': normalise so the whole population is 1.0</span>
+<span class="s2"> after implementing the appropriate fractions</span>
+<span class="s2"> S/(S+B+T+Q), B/(S+B+T+Q), T/(S+B+T+Q), Q/(S+B+T+Q)</span>
+<span class="s2"> given a mix of multiplicities, you can either (noting that</span>
+<span class="s2"> here (S,B,T,Q) = appropriate modulator * model(S,B,T,Q) )</span>
+<span class="s2"> note: if you only set one multiplicity_modulator</span>
+<span class="s2"> to 1, and all the others to 0, then normalising</span>
+<span class="s2"> will mean that you effectively have the same number</span>
+<span class="s2"> of stars as single, binary, triple or quad (whichever</span>
+<span class="s2"> is non-zero) i.e. the multiplicity fraction is ignored.</span>
+<span class="s2"> This is probably not useful except for</span>
+<span class="s2"> testing purposes or comparing to old grids.</span>
+
+<span class="s2"> 'raw' : stick to what is predicted, i.e.</span>
+<span class="s2"> S/(S+B+T+Q), B/(S+B+T+Q), T/(S+B+T+Q), Q/(S+B+T+Q)</span>
+<span class="s2"> without normalisation</span>
+<span class="s2"> (in which case the total probability < 1.0 unless</span>
+<span class="s2"> all you use single, binary, triple and quadruple)</span>
+
+<span class="s2"> 'merge' : e.g. if you only have single and binary,</span>
+<span class="s2"> add the triples and quadruples to the binaries, so</span>
+<span class="s2"> binaries represent all multiple systems</span>
+<span class="s2"> ...</span>
+<span class="s2"> *** this is canonical binary population synthesis ***</span>
+
+<span class="s2"> It only takes the maximum multiplicity into account,</span>
+<span class="s2"> i.e. it doesn't multiply the resulting array by the multiplicity modulator again.</span>
+<span class="s2"> This prevents the resulting array to always be 1 if only 1 multiplicity modulator element is nonzero</span>
+
+<span class="s2"> Note: if multiplicity_modulator == [1,1,1,1]. this option does nothing (equivalent to 'raw').</span>
+<span class="s2"> """</span><span class="p">,</span>
+ <span class="s2">"q_low_extrapolation_method"</span><span class="p">:</span> <span class="s2">"""</span>
+<span class="s2"> q extrapolation (below 0.15) method</span>
+<span class="s2"> none</span>
+<span class="s2"> flat</span>
+<span class="s2"> linear2</span>
+<span class="s2"> plaw2</span>
+<span class="s2"> nolowq</span>
+<span class="s2"> """</span><span class="p">,</span>
+ <span class="s2">"q_high_extrapolation_method"</span><span class="p">:</span> <span class="s2">"Same as q_low_extrapolation_method"</span><span class="p">,</span>
+ <span class="p">}</span></div></div>
+</pre></div>
+
+ </div>
+ </div>
+ <footer>
+
+ <hr/>
+
+ <div role="contentinfo">
+ <p>© Copyright 2021, David Hendriks, Robert Izzard.</p>
+ </div>
+
+ Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using a
+ <a href="https://github.com/readthedocs/sphinx_rtd_theme">theme</a>
+ provided by <a href="https://readthedocs.org">Read the Docs</a>.
+
+<br><br>
+Generated on binarycpython git branch: development_0.9.3/2.2.1 git revision 6c50cae388f9d9326bbb687ca0ecdc2df766f7f5 url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c-python/-/tree/development_0.9.3/2.2.1">git url</a>.
+<br><br>
+Using binary_c with bit branch branch_david: git revision: "5845:20220107:201620bd7" url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c/-/tree/branch_david">git url</a>.
+
+
+
+</footer>
+ </div>
+ </div>
+ </section>
+ </div>
+ <script>
+ jQuery(function () {
+ SphinxRtdTheme.Navigation.enable(true);
+ });
+ </script>
+
+</body>
+</html>
\ No newline at end of file
diff --git a/docs/build/html/_modules/binarycpython/utils/population_extensions/analytics.html b/docs/build/html/_modules/binarycpython/utils/population_extensions/analytics.html
index 667ea3f21..07fde3935 100644
--- a/docs/build/html/_modules/binarycpython/utils/population_extensions/analytics.html
+++ b/docs/build/html/_modules/binarycpython/utils/population_extensions/analytics.html
@@ -205,9 +205,9 @@
provided by <a href="https://readthedocs.org">Read the Docs</a>.
<br><br>
-Generated on binarycpython git branch: development_0.9.3/2.2.1 git revision 8f3ed88f14c91d76a1fccf71294de4f0e9a160fd url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c-python/-/tree/development_0.9.3/2.2.1">git url</a>.
+Generated on binarycpython git branch: development_0.9.3/2.2.1 git revision 6c50cae388f9d9326bbb687ca0ecdc2df766f7f5 url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c-python/-/tree/development_0.9.3/2.2.1">git url</a>.
<br><br>
-Using binary_c with bit branch branch_david: git revision: "5834:20211216:a3146490e" url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c/-/tree/branch_david">git url</a>.
+Using binary_c with bit branch branch_david: git revision: "5845:20220107:201620bd7" url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c/-/tree/branch_david">git url</a>.
diff --git a/docs/build/html/_modules/binarycpython/utils/population_extensions/cache.html b/docs/build/html/_modules/binarycpython/utils/population_extensions/cache.html
index 318af4167..a20d532fc 100644
--- a/docs/build/html/_modules/binarycpython/utils/population_extensions/cache.html
+++ b/docs/build/html/_modules/binarycpython/utils/population_extensions/cache.html
@@ -451,9 +451,9 @@
provided by <a href="https://readthedocs.org">Read the Docs</a>.
<br><br>
-Generated on binarycpython git branch: development_0.9.3/2.2.1 git revision 8f3ed88f14c91d76a1fccf71294de4f0e9a160fd url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c-python/-/tree/development_0.9.3/2.2.1">git url</a>.
+Generated on binarycpython git branch: development_0.9.3/2.2.1 git revision 6c50cae388f9d9326bbb687ca0ecdc2df766f7f5 url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c-python/-/tree/development_0.9.3/2.2.1">git url</a>.
<br><br>
-Using binary_c with bit branch branch_david: git revision: "5834:20211216:a3146490e" url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c/-/tree/branch_david">git url</a>.
+Using binary_c with bit branch branch_david: git revision: "5845:20220107:201620bd7" url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c/-/tree/branch_david">git url</a>.
diff --git a/docs/build/html/_modules/binarycpython/utils/population_extensions/condor.html b/docs/build/html/_modules/binarycpython/utils/population_extensions/condor.html
index 16424c76a..8970b049d 100644
--- a/docs/build/html/_modules/binarycpython/utils/population_extensions/condor.html
+++ b/docs/build/html/_modules/binarycpython/utils/population_extensions/condor.html
@@ -641,9 +641,9 @@
provided by <a href="https://readthedocs.org">Read the Docs</a>.
<br><br>
-Generated on binarycpython git branch: development_0.9.3/2.2.1 git revision 8f3ed88f14c91d76a1fccf71294de4f0e9a160fd url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c-python/-/tree/development_0.9.3/2.2.1">git url</a>.
+Generated on binarycpython git branch: development_0.9.3/2.2.1 git revision 6c50cae388f9d9326bbb687ca0ecdc2df766f7f5 url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c-python/-/tree/development_0.9.3/2.2.1">git url</a>.
<br><br>
-Using binary_c with bit branch branch_david: git revision: "5834:20211216:a3146490e" url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c/-/tree/branch_david">git url</a>.
+Using binary_c with bit branch branch_david: git revision: "5845:20220107:201620bd7" url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c/-/tree/branch_david">git url</a>.
diff --git a/docs/build/html/_modules/binarycpython/utils/population_extensions/dataIO.html b/docs/build/html/_modules/binarycpython/utils/population_extensions/dataIO.html
index 9de9ab8fa..6dbd86538 100644
--- a/docs/build/html/_modules/binarycpython/utils/population_extensions/dataIO.html
+++ b/docs/build/html/_modules/binarycpython/utils/population_extensions/dataIO.html
@@ -881,9 +881,9 @@
provided by <a href="https://readthedocs.org">Read the Docs</a>.
<br><br>
-Generated on binarycpython git branch: development_0.9.3/2.2.1 git revision 8f3ed88f14c91d76a1fccf71294de4f0e9a160fd url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c-python/-/tree/development_0.9.3/2.2.1">git url</a>.
+Generated on binarycpython git branch: development_0.9.3/2.2.1 git revision 6c50cae388f9d9326bbb687ca0ecdc2df766f7f5 url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c-python/-/tree/development_0.9.3/2.2.1">git url</a>.
<br><br>
-Using binary_c with bit branch branch_david: git revision: "5834:20211216:a3146490e" url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c/-/tree/branch_david">git url</a>.
+Using binary_c with bit branch branch_david: git revision: "5845:20220107:201620bd7" url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c/-/tree/branch_david">git url</a>.
diff --git a/docs/build/html/_modules/binarycpython/utils/population_extensions/distribution_functions.html b/docs/build/html/_modules/binarycpython/utils/population_extensions/distribution_functions.html
index 32ba85894..5fe79eed4 100644
--- a/docs/build/html/_modules/binarycpython/utils/population_extensions/distribution_functions.html
+++ b/docs/build/html/_modules/binarycpython/utils/population_extensions/distribution_functions.html
@@ -482,17 +482,19 @@
<span class="bp">self</span><span class="p">,</span> <span class="n">m</span><span class="p">:</span> <span class="n">Union</span><span class="p">[</span><span class="nb">int</span><span class="p">,</span> <span class="nb">float</span><span class="p">],</span> <span class="n">newopts</span><span class="p">:</span> <span class="nb">dict</span> <span class="o">=</span> <span class="kc">None</span>
<span class="p">)</span> <span class="o">-></span> <span class="n">Union</span><span class="p">[</span><span class="nb">int</span><span class="p">,</span> <span class="nb">float</span><span class="p">]:</span>
<span class="sd">"""</span>
-<span class="sd"> Probability distribution function for Kroupa 2001 IMF,</span>
-<span class="sd"> where the default values to the three_part_powerlaw are:</span>
-<span class="sd"> default = {</span>
-<span class="sd"> "m0": 0.1,</span>
-<span class="sd"> "m1": 0.5,</span>
-<span class="sd"> "m2": 1,</span>
-<span class="sd"> "mmax": 100,</span>
-<span class="sd"> "p1": -1.3,</span>
-<span class="sd"> "p2": -2.3,</span>
-<span class="sd"> "p3": -2.3</span>
-<span class="sd"> }</span>
+<span class="sd"> Probability distribution function for Kroupa 2001 IMF.</span>
+
+<span class="sd"> The (default) values for this is::</span>
+
+<span class="sd"> default = {</span>
+<span class="sd"> "m0": 0.1,</span>
+<span class="sd"> "m1": 0.5,</span>
+<span class="sd"> "m2": 1,</span>
+<span class="sd"> "mmax": 100,</span>
+<span class="sd"> "p1": -1.3,</span>
+<span class="sd"> "p2": -2.3,</span>
+<span class="sd"> "p3": -2.3</span>
+<span class="sd"> }</span>
<span class="sd"> Args:</span>
<span class="sd"> m: mass to evaluate the distribution at</span>
@@ -2398,9 +2400,9 @@
provided by <a href="https://readthedocs.org">Read the Docs</a>.
<br><br>
-Generated on binarycpython git branch: development_0.9.3/2.2.1 git revision 8f3ed88f14c91d76a1fccf71294de4f0e9a160fd url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c-python/-/tree/development_0.9.3/2.2.1">git url</a>.
+Generated on binarycpython git branch: development_0.9.3/2.2.1 git revision 6c50cae388f9d9326bbb687ca0ecdc2df766f7f5 url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c-python/-/tree/development_0.9.3/2.2.1">git url</a>.
<br><br>
-Using binary_c with bit branch branch_david: git revision: "5834:20211216:a3146490e" url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c/-/tree/branch_david">git url</a>.
+Using binary_c with bit branch branch_david: git revision: "5845:20220107:201620bd7" url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c/-/tree/branch_david">git url</a>.
diff --git a/docs/build/html/_modules/binarycpython/utils/population_extensions/grid_logging.html b/docs/build/html/_modules/binarycpython/utils/population_extensions/grid_logging.html
new file mode 100644
index 000000000..6d77b3bec
--- /dev/null
+++ b/docs/build/html/_modules/binarycpython/utils/population_extensions/grid_logging.html
@@ -0,0 +1,573 @@
+<!DOCTYPE html>
+<html class="writer-html5" lang="en" >
+<head>
+ <meta charset="utf-8" />
+ <meta name="viewport" content="width=device-width, initial-scale=1.0" />
+ <title>binarycpython.utils.population_extensions.grid_logging — binary_c-python documentation</title>
+ <link rel="stylesheet" href="../../../../_static/pygments.css" type="text/css" />
+ <link rel="stylesheet" href="../../../../_static/css/theme.css" type="text/css" />
+ <!--[if lt IE 9]>
+ <script src="../../../../_static/js/html5shiv.min.js"></script>
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+ <script src="../../../../_static/underscore.js"></script>
+ <script src="../../../../_static/doctools.js"></script>
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+ <script src="../../../../_static/js/theme.js"></script>
+ <link rel="index" title="Index" href="../../../../genindex.html" />
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+<body class="wy-body-for-nav">
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+ </div><div class="wy-menu wy-menu-vertical" data-spy="affix" role="navigation" aria-label="Navigation menu">
+ <p class="caption" role="heading"><span class="caption-text">Contents:</span></p>
+<ul>
+<li class="toctree-l1"><a class="reference internal" href="../../../../readme_link.html">Python module for binary_c</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../../../modules.html">Binarycpython code</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../../../example_notebooks.html">Example notebooks</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../../../binary_c_parameters.html">Binary_c parameters</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../../../../grid_options_descriptions.html">Population grid code options</a></li>
+<li class="toctree-l1"><a class="reference external" href="https://gitlab.eps.surrey.ac.uk/ri0005/binary_c-python">Visit the GitLab repo</a></li>
+<li class="toctree-l1"><a class="reference external" href="https://gitlab.eps.surrey.ac.uk/ri0005/binary_c-python/-/issues/new">Submit an issue</a></li>
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+
+ <h1>Source code for binarycpython.utils.population_extensions.grid_logging</h1><div class="highlight"><pre>
+<span></span><span class="sd">"""</span>
+<span class="sd">The class extension for the population object that contains logging functionality</span>
+<span class="sd">"""</span>
+
+<span class="c1"># pylint: disable=E1101</span>
+
+<span class="kn">import</span> <span class="nn">os</span>
+<span class="kn">import</span> <span class="nn">sys</span>
+<span class="kn">import</span> <span class="nn">time</span>
+<span class="kn">import</span> <span class="nn">logging</span>
+<span class="kn">import</span> <span class="nn">strip_ansi</span>
+
+<span class="kn">import</span> <span class="nn">binarycpython.utils.functions</span>
+
+<span class="kn">from</span> <span class="nn">binarycpython.utils.functions</span> <span class="kn">import</span> <span class="p">(</span>
+ <span class="n">format_number</span><span class="p">,</span>
+ <span class="n">trem</span><span class="p">,</span>
+ <span class="n">remove_file</span><span class="p">,</span>
+ <span class="n">verbose_print</span>
+<span class="p">)</span>
+<span class="kn">from</span> <span class="nn">binarycpython.utils.population_extensions.grid_options_defaults</span> <span class="kn">import</span> <span class="n">secs_per_day</span>
+
+<span class="kn">from</span> <span class="nn">binarycpython.utils.custom_logging_functions</span> <span class="kn">import</span> <span class="p">(</span>
+ <span class="n">binary_c_log_code</span><span class="p">,</span>
+ <span class="n">create_and_load_logging_function</span><span class="p">,</span>
+ <span class="n">autogen_C_logging_code</span>
+
+<span class="p">)</span>
+
+
+<div class="viewcode-block" id="grid_logging"><a class="viewcode-back" href="../../../../population_extensions/grid_logging.html#binarycpython.utils.population_extensions.grid_logging.grid_logging">[docs]</a><span class="k">class</span> <span class="nc">grid_logging</span><span class="p">:</span>
+ <span class="sd">"""</span>
+<span class="sd"> The class extension for the population object that contains logging functionality</span>
+<span class="sd"> """</span>
+ <span class="k">def</span> <span class="fm">__init__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">):</span>
+ <span class="sd">"""</span>
+<span class="sd"> Init function for the grid_logging class</span>
+<span class="sd"> """</span>
+
+ <span class="k">return</span>
+
+ <span class="k">def</span> <span class="nf">_set_custom_logging</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
+ <span class="sd">"""</span>
+<span class="sd"> Function/routine to set all the custom logging so that the function memory pointer</span>
+<span class="sd"> is known to the grid.</span>
+
+<span class="sd"> When the memory adress is loaded and the library file is set we'll skip rebuilding the library</span>
+<span class="sd"> """</span>
+
+ <span class="c1"># Only if the values are the 'default' unset values</span>
+ <span class="k">if</span> <span class="p">(</span>
+ <span class="bp">self</span><span class="o">.</span><span class="n">grid_options</span><span class="p">[</span><span class="s2">"custom_logging_func_memaddr"</span><span class="p">]</span> <span class="o">==</span> <span class="o">-</span><span class="mi">1</span>
+ <span class="ow">and</span> <span class="bp">self</span><span class="o">.</span><span class="n">grid_options</span><span class="p">[</span><span class="s2">"_custom_logging_shared_library_file"</span><span class="p">]</span> <span class="ow">is</span> <span class="kc">None</span>
+ <span class="p">):</span>
+ <span class="bp">self</span><span class="o">.</span><span class="n">verbose_print</span><span class="p">(</span>
+ <span class="s2">"Creating and loading custom logging functionality"</span><span class="p">,</span>
+ <span class="bp">self</span><span class="o">.</span><span class="n">grid_options</span><span class="p">[</span><span class="s2">"verbosity"</span><span class="p">],</span>
+ <span class="mi">1</span><span class="p">,</span>
+ <span class="p">)</span>
+ <span class="c1"># C_logging_code gets priority of C_autogen_code</span>
+ <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">grid_options</span><span class="p">[</span><span class="s2">"C_logging_code"</span><span class="p">]:</span>
+ <span class="c1"># Generate entire shared lib code around logging lines</span>
+ <span class="n">custom_logging_code</span> <span class="o">=</span> <span class="n">binary_c_log_code</span><span class="p">(</span>
+ <span class="bp">self</span><span class="o">.</span><span class="n">grid_options</span><span class="p">[</span><span class="s2">"C_logging_code"</span><span class="p">],</span>
+ <span class="n">verbosity</span><span class="o">=</span><span class="bp">self</span><span class="o">.</span><span class="n">grid_options</span><span class="p">[</span><span class="s2">"verbosity"</span><span class="p">]</span>
+ <span class="o">-</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">_CUSTOM_LOGGING_VERBOSITY_LEVEL</span> <span class="o">-</span> <span class="mi">1</span><span class="p">),</span>
+ <span class="p">)</span>
+
+ <span class="c1"># Load memory address</span>
+ <span class="p">(</span>
+ <span class="bp">self</span><span class="o">.</span><span class="n">grid_options</span><span class="p">[</span><span class="s2">"custom_logging_func_memaddr"</span><span class="p">],</span>
+ <span class="bp">self</span><span class="o">.</span><span class="n">grid_options</span><span class="p">[</span><span class="s2">"_custom_logging_shared_library_file"</span><span class="p">],</span>
+ <span class="p">)</span> <span class="o">=</span> <span class="n">create_and_load_logging_function</span><span class="p">(</span>
+ <span class="n">custom_logging_code</span><span class="p">,</span>
+ <span class="n">verbosity</span><span class="o">=</span><span class="bp">self</span><span class="o">.</span><span class="n">grid_options</span><span class="p">[</span><span class="s2">"verbosity"</span><span class="p">]</span>
+ <span class="o">-</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">_CUSTOM_LOGGING_VERBOSITY_LEVEL</span> <span class="o">-</span> <span class="mi">1</span><span class="p">),</span>
+ <span class="n">custom_tmp_dir</span><span class="o">=</span><span class="bp">self</span><span class="o">.</span><span class="n">grid_options</span><span class="p">[</span><span class="s2">"tmp_dir"</span><span class="p">],</span>
+ <span class="p">)</span>
+
+ <span class="k">elif</span> <span class="bp">self</span><span class="o">.</span><span class="n">grid_options</span><span class="p">[</span><span class="s2">"C_auto_logging"</span><span class="p">]:</span>
+ <span class="c1"># Generate real logging code</span>
+ <span class="n">logging_line</span> <span class="o">=</span> <span class="n">autogen_C_logging_code</span><span class="p">(</span>
+ <span class="bp">self</span><span class="o">.</span><span class="n">grid_options</span><span class="p">[</span><span class="s2">"C_auto_logging"</span><span class="p">],</span>
+ <span class="n">verbosity</span><span class="o">=</span><span class="bp">self</span><span class="o">.</span><span class="n">grid_options</span><span class="p">[</span><span class="s2">"verbosity"</span><span class="p">]</span>
+ <span class="o">-</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">_CUSTOM_LOGGING_VERBOSITY_LEVEL</span> <span class="o">-</span> <span class="mi">1</span><span class="p">),</span>
+ <span class="p">)</span>
+
+ <span class="c1"># Generate entire shared lib code around logging lines</span>
+ <span class="n">custom_logging_code</span> <span class="o">=</span> <span class="n">binary_c_log_code</span><span class="p">(</span>
+ <span class="n">logging_line</span><span class="p">,</span>
+ <span class="n">verbosity</span><span class="o">=</span><span class="bp">self</span><span class="o">.</span><span class="n">grid_options</span><span class="p">[</span><span class="s2">"verbosity"</span><span class="p">]</span>
+ <span class="o">-</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">_CUSTOM_LOGGING_VERBOSITY_LEVEL</span> <span class="o">-</span> <span class="mi">1</span><span class="p">),</span>
+ <span class="p">)</span>
+
+ <span class="c1"># Load memory address</span>
+ <span class="p">(</span>
+ <span class="bp">self</span><span class="o">.</span><span class="n">grid_options</span><span class="p">[</span><span class="s2">"custom_logging_func_memaddr"</span><span class="p">],</span>
+ <span class="bp">self</span><span class="o">.</span><span class="n">grid_options</span><span class="p">[</span><span class="s2">"_custom_logging_shared_library_file"</span><span class="p">],</span>
+ <span class="p">)</span> <span class="o">=</span> <span class="n">create_and_load_logging_function</span><span class="p">(</span>
+ <span class="n">custom_logging_code</span><span class="p">,</span>
+ <span class="n">verbosity</span><span class="o">=</span><span class="bp">self</span><span class="o">.</span><span class="n">grid_options</span><span class="p">[</span><span class="s2">"verbosity"</span><span class="p">]</span>
+ <span class="o">-</span> <span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">_CUSTOM_LOGGING_VERBOSITY_LEVEL</span> <span class="o">-</span> <span class="mi">1</span><span class="p">),</span>
+ <span class="n">custom_tmp_dir</span><span class="o">=</span><span class="bp">self</span><span class="o">.</span><span class="n">grid_options</span><span class="p">[</span><span class="s2">"tmp_dir"</span><span class="p">],</span>
+ <span class="p">)</span>
+ <span class="k">else</span><span class="p">:</span>
+ <span class="bp">self</span><span class="o">.</span><span class="n">verbose_print</span><span class="p">(</span>
+ <span class="s2">"Custom logging library already loaded. Not setting them again."</span><span class="p">,</span>
+ <span class="bp">self</span><span class="o">.</span><span class="n">grid_options</span><span class="p">[</span><span class="s2">"verbosity"</span><span class="p">],</span>
+ <span class="mi">1</span><span class="p">,</span>
+ <span class="p">)</span>
+
+ <span class="k">def</span> <span class="nf">_print_info</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">run_number</span><span class="p">,</span> <span class="n">total_systems</span><span class="p">,</span> <span class="n">full_system_dict</span><span class="p">):</span>
+ <span class="sd">"""</span>
+<span class="sd"> Function to print info about the current system and the progress of the grid.</span>
+
+<span class="sd"> # color info tricks from https://ozzmaker.com/add-colour-to-text-in-python/</span>
+<span class="sd"> https://stackoverflow.com/questions/287871/how-to-print-colored-text-in-terminal-in-python</span>
+<span class="sd"> """</span>
+
+ <span class="c1"># Define frequency</span>
+ <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">grid_options</span><span class="p">[</span><span class="s2">"verbosity"</span><span class="p">]</span> <span class="o">==</span> <span class="mi">1</span><span class="p">:</span>
+ <span class="n">print_freq</span> <span class="o">=</span> <span class="mi">1</span>
+ <span class="k">else</span><span class="p">:</span>
+ <span class="n">print_freq</span> <span class="o">=</span> <span class="mi">10</span>
+
+ <span class="k">if</span> <span class="n">run_number</span> <span class="o">%</span> <span class="n">print_freq</span> <span class="o">==</span> <span class="mi">0</span><span class="p">:</span>
+ <span class="n">binary_cmdline_string</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">_return_argline</span><span class="p">(</span><span class="n">full_system_dict</span><span class="p">)</span>
+ <span class="n">info_string</span> <span class="o">=</span> <span class="s2">"</span><span class="si">{color_part_1}</span><span class="s2"> </span><span class="se">\</span>
+<span class="s2"> </span><span class="si">{text_part_1}{end_part_1}{color_part_2}</span><span class="s2"> </span><span class="se">\</span>
+<span class="s2"> </span><span class="si">{text_part_2}{end_part_2}</span><span class="s2">"</span><span class="o">.</span><span class="n">format</span><span class="p">(</span>
+ <span class="n">color_part_1</span><span class="o">=</span><span class="s2">"</span><span class="se">\033</span><span class="s2">[1;32;41m"</span><span class="p">,</span>
+ <span class="n">text_part_1</span><span class="o">=</span><span class="s2">"</span><span class="si">{}</span><span class="s2">/</span><span class="si">{}</span><span class="s2">"</span><span class="o">.</span><span class="n">format</span><span class="p">(</span><span class="n">run_number</span><span class="p">,</span> <span class="n">total_systems</span><span class="p">),</span>
+ <span class="n">end_part_1</span><span class="o">=</span><span class="s2">"</span><span class="se">\033</span><span class="s2">[0m"</span><span class="p">,</span>
+ <span class="n">color_part_2</span><span class="o">=</span><span class="s2">"</span><span class="se">\033</span><span class="s2">[1;32;42m"</span><span class="p">,</span>
+ <span class="n">text_part_2</span><span class="o">=</span><span class="s2">"</span><span class="si">{}</span><span class="s2">"</span><span class="o">.</span><span class="n">format</span><span class="p">(</span><span class="n">binary_cmdline_string</span><span class="p">),</span>
+ <span class="n">end_part_2</span><span class="o">=</span><span class="s2">"</span><span class="se">\033</span><span class="s2">[0m"</span><span class="p">,</span>
+ <span class="p">)</span>
+ <span class="nb">print</span><span class="p">(</span><span class="n">info_string</span><span class="p">)</span>
+
+ <span class="k">def</span> <span class="nf">_set_loggers</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
+ <span class="sd">"""</span>
+<span class="sd"> Function to set the loggers for the execution of the grid</span>
+<span class="sd"> """</span>
+
+ <span class="c1"># Set log file</span>
+ <span class="n">binary_c_logfile</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">grid_options</span><span class="p">[</span><span class="s2">"log_file"</span><span class="p">]</span>
+
+ <span class="c1"># Create directory</span>
+ <span class="n">os</span><span class="o">.</span><span class="n">makedirs</span><span class="p">(</span><span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">dirname</span><span class="p">(</span><span class="n">binary_c_logfile</span><span class="p">),</span> <span class="n">exist_ok</span><span class="o">=</span><span class="kc">True</span><span class="p">)</span>
+
+ <span class="c1"># Set up logger</span>
+ <span class="bp">self</span><span class="o">.</span><span class="n">logger</span> <span class="o">=</span> <span class="n">logging</span><span class="o">.</span><span class="n">getLogger</span><span class="p">(</span><span class="s2">"binary_c_python_logger"</span><span class="p">)</span>
+ <span class="bp">self</span><span class="o">.</span><span class="n">logger</span><span class="o">.</span><span class="n">setLevel</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">grid_options</span><span class="p">[</span><span class="s2">"verbosity"</span><span class="p">])</span>
+
+ <span class="c1"># Reset handlers</span>
+ <span class="bp">self</span><span class="o">.</span><span class="n">logger</span><span class="o">.</span><span class="n">handlers</span> <span class="o">=</span> <span class="p">[]</span>
+
+ <span class="c1"># Set formatting of output</span>
+ <span class="n">log_formatter</span> <span class="o">=</span> <span class="n">logging</span><span class="o">.</span><span class="n">Formatter</span><span class="p">(</span>
+ <span class="s2">"</span><span class="si">%(asctime)s</span><span class="s2"> - </span><span class="si">%(name)s</span><span class="s2"> - </span><span class="si">%(levelname)s</span><span class="s2"> - </span><span class="si">%(message)s</span><span class="s2">"</span>
+ <span class="p">)</span>
+
+ <span class="c1"># Make and add file handlers</span>
+ <span class="c1"># make handler for output to file</span>
+ <span class="n">handler_file</span> <span class="o">=</span> <span class="n">logging</span><span class="o">.</span><span class="n">FileHandler</span><span class="p">(</span><span class="n">filename</span><span class="o">=</span><span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">join</span><span class="p">(</span><span class="n">binary_c_logfile</span><span class="p">))</span>
+ <span class="n">handler_file</span><span class="o">.</span><span class="n">setFormatter</span><span class="p">(</span><span class="n">log_formatter</span><span class="p">)</span>
+ <span class="n">handler_file</span><span class="o">.</span><span class="n">setLevel</span><span class="p">(</span><span class="n">logging</span><span class="o">.</span><span class="n">INFO</span><span class="p">)</span>
+
+ <span class="c1"># Make handler for output to stdout</span>
+ <span class="n">handler_stdout</span> <span class="o">=</span> <span class="n">logging</span><span class="o">.</span><span class="n">StreamHandler</span><span class="p">(</span><span class="n">sys</span><span class="o">.</span><span class="n">stdout</span><span class="p">)</span>
+ <span class="n">handler_stdout</span><span class="o">.</span><span class="n">setFormatter</span><span class="p">(</span><span class="n">log_formatter</span><span class="p">)</span>
+ <span class="n">handler_stdout</span><span class="o">.</span><span class="n">setLevel</span><span class="p">(</span><span class="n">logging</span><span class="o">.</span><span class="n">INFO</span><span class="p">)</span>
+
+ <span class="c1"># Add the loggers</span>
+ <span class="bp">self</span><span class="o">.</span><span class="n">logger</span><span class="o">.</span><span class="n">addHandler</span><span class="p">(</span><span class="n">handler_file</span><span class="p">)</span>
+ <span class="bp">self</span><span class="o">.</span><span class="n">logger</span><span class="o">.</span><span class="n">addHandler</span><span class="p">(</span><span class="n">handler_stdout</span><span class="p">)</span>
+
+ <span class="c1">######################</span>
+ <span class="c1"># Status logging</span>
+
+<div class="viewcode-block" id="grid_logging.vb1print"><a class="viewcode-back" href="../../../../population_extensions/grid_logging.html#binarycpython.utils.population_extensions.grid_logging.grid_logging.vb1print">[docs]</a> <span class="k">def</span> <span class="nf">vb1print</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">ID</span><span class="p">,</span> <span class="n">now</span><span class="p">,</span> <span class="n">system_number</span><span class="p">,</span> <span class="n">system_dict</span><span class="p">):</span>
+ <span class="sd">"""</span>
+<span class="sd"> Verbosity-level 1 printing, to keep an eye on a grid.</span>
+
+<span class="sd"> Input:</span>
+<span class="sd"> ID: thread ID for debugging (int): TODO fix this</span>
+<span class="sd"> now: the time now as a UNIX-style epoch in seconds (float)</span>
+<span class="sd"> system_number: the system number</span>
+<span class="sd"> """</span>
+
+ <span class="c1"># calculate estimated time of arrive (eta and eta_secs), time per run (tpr)</span>
+ <span class="n">localtime</span> <span class="o">=</span> <span class="n">time</span><span class="o">.</span><span class="n">localtime</span><span class="p">(</span><span class="n">now</span><span class="p">)</span>
+
+ <span class="c1"># calculate stats</span>
+ <span class="n">n</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">shared_memory</span><span class="p">[</span><span class="s2">"n_saved_log_stats"</span><span class="p">]</span><span class="o">.</span><span class="n">value</span>
+ <span class="k">if</span> <span class="n">n</span> <span class="o"><</span> <span class="mi">2</span><span class="p">:</span>
+ <span class="c1"># simple 1-system calculation: inaccurate</span>
+ <span class="c1"># but best for small n</span>
+ <span class="n">dt</span> <span class="o">=</span> <span class="n">now</span> <span class="o">-</span> <span class="bp">self</span><span class="o">.</span><span class="n">shared_memory</span><span class="p">[</span><span class="s2">"prev_log_time"</span><span class="p">][</span><span class="mi">0</span><span class="p">]</span>
+ <span class="n">dn</span> <span class="o">=</span> <span class="n">system_number</span> <span class="o">-</span> <span class="bp">self</span><span class="o">.</span><span class="n">shared_memory</span><span class="p">[</span><span class="s2">"prev_log_system_number"</span><span class="p">][</span><span class="mi">0</span><span class="p">]</span>
+ <span class="k">else</span><span class="p">:</span>
+ <span class="c1"># average over n_saved_log_stats</span>
+ <span class="n">dt</span> <span class="o">=</span> <span class="p">(</span>
+ <span class="bp">self</span><span class="o">.</span><span class="n">shared_memory</span><span class="p">[</span><span class="s2">"prev_log_time"</span><span class="p">][</span><span class="mi">0</span><span class="p">]</span>
+ <span class="o">-</span> <span class="bp">self</span><span class="o">.</span><span class="n">shared_memory</span><span class="p">[</span><span class="s2">"prev_log_time"</span><span class="p">][</span><span class="n">n</span> <span class="o">-</span> <span class="mi">1</span><span class="p">]</span>
+ <span class="p">)</span>
+ <span class="n">dn</span> <span class="o">=</span> <span class="p">(</span>
+ <span class="bp">self</span><span class="o">.</span><span class="n">shared_memory</span><span class="p">[</span><span class="s2">"prev_log_system_number"</span><span class="p">][</span><span class="mi">0</span><span class="p">]</span>
+ <span class="o">-</span> <span class="bp">self</span><span class="o">.</span><span class="n">shared_memory</span><span class="p">[</span><span class="s2">"prev_log_system_number"</span><span class="p">][</span><span class="n">n</span> <span class="o">-</span> <span class="mi">1</span><span class="p">]</span>
+ <span class="p">)</span>
+
+ <span class="n">eta</span><span class="p">,</span> <span class="n">units</span><span class="p">,</span> <span class="n">tpr</span><span class="p">,</span> <span class="n">eta_secs</span> <span class="o">=</span> <span class="n">trem</span><span class="p">(</span>
+ <span class="n">dt</span><span class="p">,</span> <span class="n">system_number</span><span class="p">,</span> <span class="n">dn</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">grid_options</span><span class="p">[</span><span class="s2">"_total_starcount"</span><span class="p">]</span>
+ <span class="p">)</span>
+
+ <span class="c1"># compensate for multithreading and modulo</span>
+ <span class="n">tpr</span> <span class="o">*=</span> <span class="bp">self</span><span class="o">.</span><span class="n">grid_options</span><span class="p">[</span><span class="s2">"num_processes"</span><span class="p">]</span> <span class="o">*</span> <span class="bp">self</span><span class="o">.</span><span class="n">grid_options</span><span class="p">[</span><span class="s2">"modulo"</span><span class="p">]</span>
+
+ <span class="k">if</span> <span class="n">eta_secs</span> <span class="o"><</span> <span class="n">secs_per_day</span><span class="p">:</span>
+ <span class="n">fintime</span> <span class="o">=</span> <span class="n">time</span><span class="o">.</span><span class="n">localtime</span><span class="p">(</span><span class="n">now</span> <span class="o">+</span> <span class="n">eta_secs</span><span class="p">)</span>
+ <span class="n">etf</span> <span class="o">=</span> <span class="s2">"</span><span class="si">{hours:02d}</span><span class="s2">:</span><span class="si">{minutes:02d}</span><span class="s2">:</span><span class="si">{seconds:02d}</span><span class="s2">"</span><span class="o">.</span><span class="n">format</span><span class="p">(</span>
+ <span class="n">hours</span><span class="o">=</span><span class="n">fintime</span><span class="o">.</span><span class="n">tm_hour</span><span class="p">,</span> <span class="n">minutes</span><span class="o">=</span><span class="n">fintime</span><span class="o">.</span><span class="n">tm_min</span><span class="p">,</span> <span class="n">seconds</span><span class="o">=</span><span class="n">fintime</span><span class="o">.</span><span class="n">tm_sec</span>
+ <span class="p">)</span>
+ <span class="k">else</span><span class="p">:</span>
+ <span class="n">d</span> <span class="o">=</span> <span class="nb">int</span><span class="p">(</span><span class="n">eta_secs</span> <span class="o">/</span> <span class="n">secs_per_day</span><span class="p">)</span>
+ <span class="k">if</span> <span class="n">d</span> <span class="o">==</span> <span class="mi">1</span><span class="p">:</span>
+ <span class="n">etf</span> <span class="o">=</span> <span class="s2">"Tomorrow"</span>
+ <span class="k">else</span><span class="p">:</span>
+ <span class="n">etf</span> <span class="o">=</span> <span class="s2">"In </span><span class="si">{}</span><span class="s2"> days"</span><span class="o">.</span><span class="n">format</span><span class="p">(</span><span class="n">d</span><span class="p">)</span>
+
+ <span class="c1"># modulo information</span>
+ <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">grid_options</span><span class="p">[</span><span class="s2">"modulo"</span><span class="p">]</span> <span class="o">==</span> <span class="mi">1</span><span class="p">:</span>
+ <span class="n">modulo</span> <span class="o">=</span> <span class="s2">""</span> <span class="c1"># usual case</span>
+ <span class="k">else</span><span class="p">:</span>
+ <span class="n">modulo</span> <span class="o">=</span> <span class="s2">"%"</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">grid_options</span><span class="p">[</span><span class="s2">"modulo"</span><span class="p">])</span>
+
+ <span class="c1"># add up memory use from each thread</span>
+ <span class="n">total_mem_use</span> <span class="o">=</span> <span class="nb">sum</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">shared_memory</span><span class="p">[</span><span class="s2">"memory_use_per_thread"</span><span class="p">])</span>
+
+ <span class="c1"># make a string to describe the system e.g. M1, M2, etc.</span>
+ <span class="n">system_string</span> <span class="o">=</span> <span class="s2">""</span>
+
+ <span class="c1"># use the multiplicity if given</span>
+ <span class="k">if</span> <span class="s2">"multiplicity"</span> <span class="ow">in</span> <span class="n">system_dict</span><span class="p">:</span>
+ <span class="n">nmult</span> <span class="o">=</span> <span class="nb">int</span><span class="p">(</span><span class="n">system_dict</span><span class="p">[</span><span class="s2">"multiplicity"</span><span class="p">])</span>
+ <span class="k">else</span><span class="p">:</span>
+ <span class="n">nmult</span> <span class="o">=</span> <span class="mi">4</span>
+
+ <span class="c1"># masses</span>
+ <span class="k">for</span> <span class="n">i</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">nmult</span><span class="p">):</span>
+ <span class="n">i1</span> <span class="o">=</span> <span class="nb">str</span><span class="p">(</span><span class="n">i</span> <span class="o">+</span> <span class="mi">1</span><span class="p">)</span>
+ <span class="k">if</span> <span class="s2">"M_"</span> <span class="o">+</span> <span class="n">i1</span> <span class="ow">in</span> <span class="n">system_dict</span><span class="p">:</span>
+ <span class="n">system_string</span> <span class="o">+=</span> <span class="p">(</span>
+ <span class="s2">"M</span><span class="si">{}</span><span class="s2">="</span><span class="o">.</span><span class="n">format</span><span class="p">(</span><span class="n">i1</span><span class="p">)</span> <span class="o">+</span> <span class="n">format_number</span><span class="p">(</span><span class="n">system_dict</span><span class="p">[</span><span class="s2">"M_"</span> <span class="o">+</span> <span class="n">i1</span><span class="p">])</span> <span class="o">+</span> <span class="s2">" "</span>
+ <span class="p">)</span>
+
+ <span class="c1"># separation and orbital period</span>
+ <span class="k">if</span> <span class="s2">"separation"</span> <span class="ow">in</span> <span class="n">system_dict</span><span class="p">:</span>
+ <span class="n">system_string</span> <span class="o">+=</span> <span class="s2">"a="</span> <span class="o">+</span> <span class="n">format_number</span><span class="p">(</span><span class="n">system_dict</span><span class="p">[</span><span class="s2">"separation"</span><span class="p">])</span>
+ <span class="k">if</span> <span class="s2">"orbital_period"</span> <span class="ow">in</span> <span class="n">system_dict</span><span class="p">:</span>
+ <span class="n">system_string</span> <span class="o">+=</span> <span class="s2">"P="</span> <span class="o">+</span> <span class="n">format_number</span><span class="p">(</span><span class="n">system_dict</span><span class="p">[</span><span class="s2">"orbital_period"</span><span class="p">])</span>
+
+ <span class="c1"># do the print</span>
+ <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">grid_options</span><span class="p">[</span><span class="s2">"_total_starcount"</span><span class="p">]</span> <span class="o">></span> <span class="mi">0</span><span class="p">:</span>
+ <span class="bp">self</span><span class="o">.</span><span class="n">verbose_print</span><span class="p">(</span>
+ <span class="s2">"</span><span class="si">{opening_colour}{system_number}</span><span class="s2">/</span><span class="si">{total_starcount}{modulo}</span><span class="s2"> </span><span class="si">{pc_colour}{pc_complete:5.1f}% c</span><span class="s2">omplete </span><span class="si">{time_colour}{hours:02d}</span><span class="s2">:</span><span class="si">{minutes:02d}</span><span class="s2">:</span><span class="si">{seconds:02d}</span><span class="s2"> </span><span class="si">{ETA_colour}</span><span class="s2">ETA=</span><span class="si">{ETA:7.1f}{units}</span><span class="s2"> tpr=</span><span class="si">{tpr:2.2e}</span><span class="s2"> </span><span class="si">{ETF_colour}</span><span class="s2">ETF=</span><span class="si">{ETF}</span><span class="s2"> </span><span class="si">{mem_use_colour}</span><span class="s2">mem:</span><span class="si">{mem_use:.1f}</span><span class="s2">MB </span><span class="si">{system_string_colour}{system_string}{closing_colour}</span><span class="s2">"</span><span class="o">.</span><span class="n">format</span><span class="p">(</span>
+ <span class="n">opening_colour</span><span class="o">=</span><span class="bp">self</span><span class="o">.</span><span class="n">ANSI_colours</span><span class="p">[</span><span class="s2">"reset"</span><span class="p">]</span>
+ <span class="o">+</span> <span class="bp">self</span><span class="o">.</span><span class="n">ANSI_colours</span><span class="p">[</span><span class="s2">"yellow on black"</span><span class="p">],</span>
+ <span class="n">system_number</span><span class="o">=</span><span class="n">system_number</span><span class="p">,</span>
+ <span class="n">total_starcount</span><span class="o">=</span><span class="bp">self</span><span class="o">.</span><span class="n">grid_options</span><span class="p">[</span><span class="s2">"_total_starcount"</span><span class="p">],</span>
+ <span class="n">modulo</span><span class="o">=</span><span class="n">modulo</span><span class="p">,</span>
+ <span class="n">pc_colour</span><span class="o">=</span><span class="bp">self</span><span class="o">.</span><span class="n">ANSI_colours</span><span class="p">[</span><span class="s2">"blue on black"</span><span class="p">],</span>
+ <span class="n">pc_complete</span><span class="o">=</span><span class="p">(</span><span class="mf">100.0</span> <span class="o">*</span> <span class="n">system_number</span><span class="p">)</span>
+ <span class="o">/</span> <span class="p">(</span><span class="mf">1.0</span> <span class="o">*</span> <span class="bp">self</span><span class="o">.</span><span class="n">grid_options</span><span class="p">[</span><span class="s2">"_total_starcount"</span><span class="p">])</span>
+ <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">grid_options</span><span class="p">[</span><span class="s2">"_total_starcount"</span><span class="p">]</span>
+ <span class="k">else</span> <span class="o">-</span><span class="mi">1</span><span class="p">,</span>
+ <span class="n">time_colour</span><span class="o">=</span><span class="bp">self</span><span class="o">.</span><span class="n">ANSI_colours</span><span class="p">[</span><span class="s2">"green on black"</span><span class="p">],</span>
+ <span class="n">hours</span><span class="o">=</span><span class="n">localtime</span><span class="o">.</span><span class="n">tm_hour</span><span class="p">,</span>
+ <span class="n">minutes</span><span class="o">=</span><span class="n">localtime</span><span class="o">.</span><span class="n">tm_min</span><span class="p">,</span>
+ <span class="n">seconds</span><span class="o">=</span><span class="n">localtime</span><span class="o">.</span><span class="n">tm_sec</span><span class="p">,</span>
+ <span class="n">ETA_colour</span><span class="o">=</span><span class="bp">self</span><span class="o">.</span><span class="n">ANSI_colours</span><span class="p">[</span><span class="s2">"red on black"</span><span class="p">],</span>
+ <span class="n">ETA</span><span class="o">=</span><span class="n">eta</span><span class="p">,</span>
+ <span class="n">units</span><span class="o">=</span><span class="n">units</span><span class="p">,</span>
+ <span class="n">tpr</span><span class="o">=</span><span class="n">tpr</span><span class="p">,</span>
+ <span class="n">ETF_colour</span><span class="o">=</span><span class="bp">self</span><span class="o">.</span><span class="n">ANSI_colours</span><span class="p">[</span><span class="s2">"blue"</span><span class="p">],</span>
+ <span class="n">ETF</span><span class="o">=</span><span class="n">etf</span><span class="p">,</span>
+ <span class="n">mem_use_colour</span><span class="o">=</span><span class="bp">self</span><span class="o">.</span><span class="n">ANSI_colours</span><span class="p">[</span><span class="s2">"magenta"</span><span class="p">],</span>
+ <span class="n">mem_use</span><span class="o">=</span><span class="n">total_mem_use</span><span class="p">,</span>
+ <span class="n">system_string_colour</span><span class="o">=</span><span class="bp">self</span><span class="o">.</span><span class="n">ANSI_colours</span><span class="p">[</span><span class="s2">"yellow"</span><span class="p">],</span>
+ <span class="n">system_string</span><span class="o">=</span><span class="n">system_string</span><span class="p">,</span>
+ <span class="n">closing_colour</span><span class="o">=</span><span class="bp">self</span><span class="o">.</span><span class="n">ANSI_colours</span><span class="p">[</span><span class="s2">"reset"</span><span class="p">],</span>
+ <span class="p">),</span>
+ <span class="bp">self</span><span class="o">.</span><span class="n">grid_options</span><span class="p">[</span><span class="s2">"verbosity"</span><span class="p">],</span>
+ <span class="mi">1</span><span class="p">,</span>
+ <span class="p">)</span>
+ <span class="k">else</span><span class="p">:</span>
+ <span class="bp">self</span><span class="o">.</span><span class="n">verbose_print</span><span class="p">(</span>
+ <span class="s2">"</span><span class="si">{opening_colour}{system_number}{modulo}</span><span class="s2"> </span><span class="si">{time_colour}{hours:02d}</span><span class="s2">:</span><span class="si">{minutes:02d}</span><span class="s2">:</span><span class="si">{seconds:02d}</span><span class="s2"> tpr=</span><span class="si">{tpr:2.2e}</span><span class="s2"> </span><span class="si">{mem_use_colour}</span><span class="s2">mem:</span><span class="si">{mem_use:.1f}</span><span class="s2">MB </span><span class="si">{system_string_colour}{system_string}{closing_colour}</span><span class="s2">"</span><span class="o">.</span><span class="n">format</span><span class="p">(</span>
+ <span class="n">opening_colour</span><span class="o">=</span><span class="bp">self</span><span class="o">.</span><span class="n">ANSI_colours</span><span class="p">[</span><span class="s2">"reset"</span><span class="p">]</span>
+ <span class="o">+</span> <span class="bp">self</span><span class="o">.</span><span class="n">ANSI_colours</span><span class="p">[</span><span class="s2">"yellow on black"</span><span class="p">],</span>
+ <span class="n">system_number</span><span class="o">=</span><span class="n">system_number</span><span class="p">,</span>
+ <span class="n">modulo</span><span class="o">=</span><span class="n">modulo</span><span class="p">,</span>
+ <span class="n">time_colour</span><span class="o">=</span><span class="bp">self</span><span class="o">.</span><span class="n">ANSI_colours</span><span class="p">[</span><span class="s2">"green on black"</span><span class="p">],</span>
+ <span class="n">hours</span><span class="o">=</span><span class="n">localtime</span><span class="o">.</span><span class="n">tm_hour</span><span class="p">,</span>
+ <span class="n">minutes</span><span class="o">=</span><span class="n">localtime</span><span class="o">.</span><span class="n">tm_min</span><span class="p">,</span>
+ <span class="n">seconds</span><span class="o">=</span><span class="n">localtime</span><span class="o">.</span><span class="n">tm_sec</span><span class="p">,</span>
+ <span class="n">tpr</span><span class="o">=</span><span class="n">tpr</span><span class="p">,</span>
+ <span class="n">mem_use_colour</span><span class="o">=</span><span class="bp">self</span><span class="o">.</span><span class="n">ANSI_colours</span><span class="p">[</span><span class="s2">"magenta"</span><span class="p">],</span>
+ <span class="n">mem_use</span><span class="o">=</span><span class="n">total_mem_use</span><span class="p">,</span>
+ <span class="n">system_string_colour</span><span class="o">=</span><span class="bp">self</span><span class="o">.</span><span class="n">ANSI_colours</span><span class="p">[</span><span class="s2">"yellow"</span><span class="p">],</span>
+ <span class="n">system_string</span><span class="o">=</span><span class="n">system_string</span><span class="p">,</span>
+ <span class="n">closing_colour</span><span class="o">=</span><span class="bp">self</span><span class="o">.</span><span class="n">ANSI_colours</span><span class="p">[</span><span class="s2">"reset"</span><span class="p">],</span>
+ <span class="p">),</span>
+ <span class="bp">self</span><span class="o">.</span><span class="n">grid_options</span><span class="p">[</span><span class="s2">"verbosity"</span><span class="p">],</span>
+ <span class="mi">1</span><span class="p">,</span>
+ <span class="p">)</span></div>
+
+<div class="viewcode-block" id="grid_logging.vb2print"><a class="viewcode-back" href="../../../../population_extensions/grid_logging.html#binarycpython.utils.population_extensions.grid_logging.grid_logging.vb2print">[docs]</a> <span class="k">def</span> <span class="nf">vb2print</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">system_dict</span><span class="p">,</span> <span class="n">cmdline_string</span><span class="p">):</span>
+ <span class="sd">"""</span>
+<span class="sd"> Extra function for verbose printing</span>
+<span class="sd"> """</span>
+
+ <span class="nb">print</span><span class="p">(</span>
+ <span class="s2">"Running this system now on thread </span><span class="si">{ID}</span><span class="se">\n</span><span class="si">{blue}{cmdline}{reset}</span><span class="s2">:</span><span class="se">\n\t</span><span class="si">{system_dict}</span><span class="se">\n</span><span class="s2">"</span><span class="o">.</span><span class="n">format</span><span class="p">(</span>
+ <span class="n">ID</span><span class="o">=</span><span class="bp">self</span><span class="o">.</span><span class="n">process_ID</span><span class="p">,</span>
+ <span class="n">blue</span><span class="o">=</span><span class="bp">self</span><span class="o">.</span><span class="n">ANSI_colours</span><span class="p">[</span><span class="s2">"blue"</span><span class="p">],</span>
+ <span class="n">cmdline</span><span class="o">=</span><span class="n">cmdline_string</span><span class="p">,</span>
+ <span class="n">reset</span><span class="o">=</span><span class="bp">self</span><span class="o">.</span><span class="n">ANSI_colours</span><span class="p">[</span><span class="s2">"reset"</span><span class="p">],</span>
+ <span class="n">system_dict</span><span class="o">=</span><span class="n">system_dict</span>
+ <span class="p">)</span>
+ <span class="p">)</span></div>
+
+<div class="viewcode-block" id="grid_logging.verbose_print"><a class="viewcode-back" href="../../../../population_extensions/grid_logging.html#binarycpython.utils.population_extensions.grid_logging.grid_logging.verbose_print">[docs]</a> <span class="k">def</span> <span class="nf">verbose_print</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="o">*</span><span class="n">args</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">):</span>
+ <span class="sd">"""</span>
+<span class="sd"> Wrapper method for the verbose print that calls the verbose print with the correct newline</span>
+
+<span class="sd"> TODO: consider merging the two</span>
+<span class="sd"> """</span>
+
+ <span class="c1"># wrapper for functions.verbose_print to use the correct newline</span>
+ <span class="n">newline</span> <span class="o">=</span> <span class="n">kwargs</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s2">"newline"</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">grid_options</span><span class="p">[</span><span class="s2">"log_newline"</span><span class="p">])</span>
+ <span class="k">if</span> <span class="n">newline</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
+ <span class="n">newline</span> <span class="o">=</span> <span class="s2">"</span><span class="se">\n</span><span class="s2">"</span>
+ <span class="n">kwargs</span><span class="p">[</span><span class="s2">"newline"</span><span class="p">]</span> <span class="o">=</span> <span class="n">newline</span>
+
+ <span class="c1"># Pass the rest to the original verbose print</span>
+ <span class="n">verbose_print</span><span class="p">(</span><span class="o">*</span><span class="n">args</span><span class="p">,</span> <span class="o">**</span><span class="n">kwargs</span><span class="p">)</span></div>
+
+ <span class="k">def</span> <span class="nf">_boxed</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="o">*</span><span class="n">stringlist</span><span class="p">,</span> <span class="n">colour</span><span class="o">=</span><span class="s2">"yellow on black"</span><span class="p">,</span> <span class="n">boxchar</span><span class="o">=</span><span class="s2">"*"</span><span class="p">,</span> <span class="n">separator</span><span class="o">=</span><span class="s2">"</span><span class="se">\n</span><span class="s2">"</span><span class="p">):</span>
+ <span class="sd">"""</span>
+<span class="sd"> Function to output a list of strings in a single box.</span>
+
+<span class="sd"> Args:</span>
+<span class="sd"> list = a list of strings to be output. If these contain the separator</span>
+<span class="sd"> (see below) these strings are split by it.</span>
+<span class="sd"> separator = strings are split on this, default "\n"</span>
+<span class="sd"> colour = the colour to be used, usually this is 'yellow on black'</span>
+<span class="sd"> as set in the ANSI_colours dict</span>
+<span class="sd"> boxchar = the character used to make the box, '*' by default</span>
+
+<span class="sd"> Note: handles tabs (\t) badly, do not use them!</span>
+<span class="sd"> """</span>
+ <span class="n">strlen</span> <span class="o">=</span> <span class="mi">0</span>
+ <span class="n">strings</span> <span class="o">=</span> <span class="p">[]</span>
+ <span class="n">lengths</span> <span class="o">=</span> <span class="p">[]</span>
+
+ <span class="c1"># make a list of strings</span>
+ <span class="k">if</span> <span class="n">separator</span><span class="p">:</span>
+ <span class="k">for</span> <span class="n">l</span> <span class="ow">in</span> <span class="n">stringlist</span><span class="p">:</span>
+ <span class="n">strings</span> <span class="o">+=</span> <span class="n">l</span><span class="o">.</span><span class="n">split</span><span class="p">(</span><span class="n">sep</span><span class="o">=</span><span class="n">separator</span><span class="p">)</span>
+ <span class="k">else</span><span class="p">:</span>
+ <span class="n">strings</span> <span class="o">=</span> <span class="n">stringlist</span>
+
+ <span class="c1"># get lengths without ANSI codes</span>
+ <span class="k">for</span> <span class="n">string</span> <span class="ow">in</span> <span class="n">strings</span><span class="p">:</span>
+ <span class="n">lengths</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="nb">len</span><span class="p">(</span><span class="n">strip_ansi</span><span class="o">.</span><span class="n">strip_ansi</span><span class="p">(</span><span class="n">string</span><span class="p">)))</span>
+
+ <span class="c1"># hence the max length</span>
+ <span class="n">strlen</span> <span class="o">=</span> <span class="nb">max</span><span class="p">(</span><span class="n">lengths</span><span class="p">)</span>
+ <span class="n">strlen</span> <span class="o">+=</span> <span class="n">strlen</span> <span class="o">%</span> <span class="mi">2</span>
+ <span class="n">header</span> <span class="o">=</span> <span class="n">boxchar</span> <span class="o">*</span> <span class="p">(</span><span class="mi">4</span> <span class="o">+</span> <span class="n">strlen</span><span class="p">)</span>
+
+ <span class="c1"># start output</span>
+ <span class="n">out</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">ANSI_colours</span><span class="p">[</span><span class="n">colour</span><span class="p">]</span> <span class="o">+</span> <span class="n">header</span> <span class="o">+</span> <span class="s2">"</span><span class="se">\n</span><span class="s2">"</span>
+
+ <span class="c1"># loop over strings to output, padding as required</span>
+ <span class="k">for</span> <span class="n">n</span><span class="p">,</span> <span class="n">string</span> <span class="ow">in</span> <span class="nb">enumerate</span><span class="p">(</span><span class="n">strings</span><span class="p">):</span>
+ <span class="k">if</span> <span class="n">lengths</span><span class="p">[</span><span class="n">n</span><span class="p">]</span> <span class="o">%</span> <span class="mi">2</span> <span class="o">==</span> <span class="mi">1</span><span class="p">:</span>
+ <span class="n">string</span> <span class="o">=</span> <span class="s2">" "</span> <span class="o">+</span> <span class="n">string</span>
+ <span class="n">pad</span> <span class="o">=</span> <span class="s2">" "</span> <span class="o">*</span> <span class="nb">int</span><span class="p">((</span><span class="n">strlen</span> <span class="o">-</span> <span class="n">lengths</span><span class="p">[</span><span class="n">n</span><span class="p">])</span> <span class="o">/</span> <span class="mi">2</span><span class="p">)</span>
+ <span class="n">out</span> <span class="o">=</span> <span class="n">out</span> <span class="o">+</span> <span class="n">boxchar</span> <span class="o">+</span> <span class="s2">" "</span> <span class="o">+</span> <span class="n">pad</span> <span class="o">+</span> <span class="n">string</span> <span class="o">+</span> <span class="n">pad</span> <span class="o">+</span> <span class="s2">" "</span> <span class="o">+</span> <span class="n">boxchar</span> <span class="o">+</span> <span class="s2">"</span><span class="se">\n</span><span class="s2">"</span>
+
+ <span class="c1"># close output and return</span>
+ <span class="n">out</span> <span class="o">=</span> <span class="n">out</span> <span class="o">+</span> <span class="n">header</span> <span class="o">+</span> <span class="s2">"</span><span class="se">\n</span><span class="s2">"</span> <span class="o">+</span> <span class="bp">self</span><span class="o">.</span><span class="n">ANSI_colours</span><span class="p">[</span><span class="s2">"reset"</span><span class="p">]</span>
+ <span class="k">return</span> <span class="n">out</span>
+
+ <span class="k">def</span> <span class="nf">_get_stream_logger</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">level</span><span class="o">=</span><span class="n">logging</span><span class="o">.</span><span class="n">DEBUG</span><span class="p">):</span>
+ <span class="sd">"""</span>
+<span class="sd"> Function to set up the streamlogger</span>
+<span class="sd"> """</span>
+
+ <span class="c1"># Format</span>
+ <span class="n">fmt</span> <span class="o">=</span> <span class="s2">"[</span><span class="si">%(asctime)s</span><span class="s2"> </span><span class="si">%(levelname)-8s</span><span class="s2"> </span><span class="si">%(processName)s</span><span class="s2">] --- </span><span class="si">%(message)s</span><span class="s2">"</span>
+ <span class="n">formatter</span> <span class="o">=</span> <span class="n">logging</span><span class="o">.</span><span class="n">Formatter</span><span class="p">(</span><span class="n">fmt</span><span class="p">)</span>
+
+ <span class="c1"># Streamhandle</span>
+ <span class="n">sh</span> <span class="o">=</span> <span class="n">logging</span><span class="o">.</span><span class="n">StreamHandler</span><span class="p">(</span><span class="n">stream</span><span class="o">=</span><span class="n">sys</span><span class="o">.</span><span class="n">stdout</span><span class="p">)</span>
+ <span class="n">sh</span><span class="o">.</span><span class="n">setLevel</span><span class="p">(</span><span class="n">level</span><span class="p">)</span>
+ <span class="n">sh</span><span class="o">.</span><span class="n">setFormatter</span><span class="p">(</span><span class="n">formatter</span><span class="p">)</span>
+
+ <span class="c1"># Logger itself</span>
+ <span class="n">stream_logger</span> <span class="o">=</span> <span class="n">logging</span><span class="o">.</span><span class="n">getLogger</span><span class="p">(</span><span class="s2">"stream_logger"</span><span class="p">)</span>
+ <span class="n">stream_logger</span><span class="o">.</span><span class="n">handlers</span> <span class="o">=</span> <span class="p">[]</span>
+ <span class="n">stream_logger</span><span class="o">.</span><span class="n">setLevel</span><span class="p">(</span><span class="n">level</span><span class="p">)</span>
+ <span class="n">stream_logger</span><span class="o">.</span><span class="n">addHandler</span><span class="p">(</span><span class="n">sh</span><span class="p">)</span>
+
+ <span class="k">return</span> <span class="n">stream_logger</span>
+
+ <span class="k">def</span> <span class="nf">_clean_up_custom_logging</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">evol_type</span><span class="p">):</span>
+ <span class="sd">"""</span>
+<span class="sd"> Function to clean up the custom logging.</span>
+<span class="sd"> Has two types:</span>
+<span class="sd"> 'single':</span>
+<span class="sd"> - removes the compiled shared library</span>
+<span class="sd"> (which name is stored in grid_options['_custom_logging_shared_library_file'])</span>
+<span class="sd"> - TODO: unloads/frees the memory allocated to that shared library</span>
+<span class="sd"> (which is stored in grid_options['custom_logging_func_memaddr'])</span>
+<span class="sd"> - sets both to None</span>
+<span class="sd"> 'multiple':</span>
+<span class="sd"> - TODO: make this and design this</span>
+<span class="sd"> """</span>
+
+ <span class="k">if</span> <span class="n">evol_type</span> <span class="o">==</span> <span class="s2">"single"</span><span class="p">:</span>
+ <span class="bp">self</span><span class="o">.</span><span class="n">verbose_print</span><span class="p">(</span>
+ <span class="s2">"Cleaning up the custom logging stuff. type: single"</span><span class="p">,</span>
+ <span class="bp">self</span><span class="o">.</span><span class="n">grid_options</span><span class="p">[</span><span class="s2">"verbosity"</span><span class="p">],</span>
+ <span class="mi">1</span><span class="p">,</span>
+ <span class="p">)</span>
+
+ <span class="c1"># TODO: Explicitly unload the library</span>
+
+ <span class="c1"># Reset the memory adress location</span>
+ <span class="bp">self</span><span class="o">.</span><span class="n">grid_options</span><span class="p">[</span><span class="s2">"custom_logging_func_memaddr"</span><span class="p">]</span> <span class="o">=</span> <span class="o">-</span><span class="mi">1</span>
+
+ <span class="c1"># remove shared library files</span>
+ <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">grid_options</span><span class="p">[</span><span class="s2">"_custom_logging_shared_library_file"</span><span class="p">]:</span>
+ <span class="n">remove_file</span><span class="p">(</span>
+ <span class="bp">self</span><span class="o">.</span><span class="n">grid_options</span><span class="p">[</span><span class="s2">"_custom_logging_shared_library_file"</span><span class="p">],</span>
+ <span class="bp">self</span><span class="o">.</span><span class="n">grid_options</span><span class="p">[</span><span class="s2">"verbosity"</span><span class="p">],</span>
+ <span class="p">)</span>
+ <span class="bp">self</span><span class="o">.</span><span class="n">grid_options</span><span class="p">[</span><span class="s2">"_custom_logging_shared_library_file"</span><span class="p">]</span> <span class="o">=</span> <span class="kc">None</span>
+
+ <span class="k">if</span> <span class="n">evol_type</span> <span class="o">==</span> <span class="s2">"population"</span><span class="p">:</span>
+ <span class="bp">self</span><span class="o">.</span><span class="n">verbose_print</span><span class="p">(</span>
+ <span class="s2">"Cleaning up the custom logging stuffs. type: population"</span><span class="p">,</span>
+ <span class="bp">self</span><span class="o">.</span><span class="n">grid_options</span><span class="p">[</span><span class="s2">"verbosity"</span><span class="p">],</span>
+ <span class="mi">1</span><span class="p">,</span>
+ <span class="p">)</span>
+
+ <span class="c1"># TODO: make sure that these also work. not fully sure if necessary tho.</span>
+ <span class="c1"># whether its a single file, or a dict of files/mem addresses</span>
+
+ <span class="k">if</span> <span class="n">evol_type</span> <span class="o">==</span> <span class="s2">"MC"</span><span class="p">:</span>
+ <span class="k">pass</span></div>
+</pre></div>
+
+ </div>
+ </div>
+ <footer>
+
+ <hr/>
+
+ <div role="contentinfo">
+ <p>© Copyright 2021, David Hendriks, Robert Izzard.</p>
+ </div>
+
+ Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using a
+ <a href="https://github.com/readthedocs/sphinx_rtd_theme">theme</a>
+ provided by <a href="https://readthedocs.org">Read the Docs</a>.
+
+<br><br>
+Generated on binarycpython git branch: development_0.9.3/2.2.1 git revision 6c50cae388f9d9326bbb687ca0ecdc2df766f7f5 url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c-python/-/tree/development_0.9.3/2.2.1">git url</a>.
+<br><br>
+Using binary_c with bit branch branch_david: git revision: "5845:20220107:201620bd7" url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c/-/tree/branch_david">git url</a>.
+
+
+
+</footer>
+ </div>
+ </div>
+ </section>
+ </div>
+ <script>
+ jQuery(function () {
+ SphinxRtdTheme.Navigation.enable(true);
+ });
+ </script>
+
+</body>
+</html>
\ No newline at end of file
diff --git a/docs/build/html/_modules/binarycpython/utils/population_extensions/grid_options_defaults.html b/docs/build/html/_modules/binarycpython/utils/population_extensions/grid_options_defaults.html
index 96ffba645..73ac8b058 100644
--- a/docs/build/html/_modules/binarycpython/utils/population_extensions/grid_options_defaults.html
+++ b/docs/build/html/_modules/binarycpython/utils/population_extensions/grid_options_defaults.html
@@ -713,9 +713,9 @@
provided by <a href="https://readthedocs.org">Read the Docs</a>.
<br><br>
-Generated on binarycpython git branch: development_0.9.3/2.2.1 git revision 8f3ed88f14c91d76a1fccf71294de4f0e9a160fd url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c-python/-/tree/development_0.9.3/2.2.1">git url</a>.
+Generated on binarycpython git branch: development_0.9.3/2.2.1 git revision 6c50cae388f9d9326bbb687ca0ecdc2df766f7f5 url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c-python/-/tree/development_0.9.3/2.2.1">git url</a>.
<br><br>
-Using binary_c with bit branch branch_david: git revision: "5834:20211216:a3146490e" url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c/-/tree/branch_david">git url</a>.
+Using binary_c with bit branch branch_david: git revision: "5845:20220107:201620bd7" url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c/-/tree/branch_david">git url</a>.
diff --git a/docs/build/html/_modules/binarycpython/utils/population_extensions/gridcode.html b/docs/build/html/_modules/binarycpython/utils/population_extensions/gridcode.html
index b39bdc444..343be0bbe 100644
--- a/docs/build/html/_modules/binarycpython/utils/population_extensions/gridcode.html
+++ b/docs/build/html/_modules/binarycpython/utils/population_extensions/gridcode.html
@@ -1219,9 +1219,9 @@
provided by <a href="https://readthedocs.org">Read the Docs</a>.
<br><br>
-Generated on binarycpython git branch: development_0.9.3/2.2.1 git revision 8f3ed88f14c91d76a1fccf71294de4f0e9a160fd url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c-python/-/tree/development_0.9.3/2.2.1">git url</a>.
+Generated on binarycpython git branch: development_0.9.3/2.2.1 git revision 6c50cae388f9d9326bbb687ca0ecdc2df766f7f5 url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c-python/-/tree/development_0.9.3/2.2.1">git url</a>.
<br><br>
-Using binary_c with bit branch branch_david: git revision: "5834:20211216:a3146490e" url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c/-/tree/branch_david">git url</a>.
+Using binary_c with bit branch branch_david: git revision: "5845:20220107:201620bd7" url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c/-/tree/branch_david">git url</a>.
diff --git a/docs/build/html/_modules/binarycpython/utils/population_extensions/metadata.html b/docs/build/html/_modules/binarycpython/utils/population_extensions/metadata.html
index 1e63576f8..1c4e6ca6b 100644
--- a/docs/build/html/_modules/binarycpython/utils/population_extensions/metadata.html
+++ b/docs/build/html/_modules/binarycpython/utils/population_extensions/metadata.html
@@ -234,9 +234,9 @@
provided by <a href="https://readthedocs.org">Read the Docs</a>.
<br><br>
-Generated on binarycpython git branch: development_0.9.3/2.2.1 git revision 8f3ed88f14c91d76a1fccf71294de4f0e9a160fd url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c-python/-/tree/development_0.9.3/2.2.1">git url</a>.
+Generated on binarycpython git branch: development_0.9.3/2.2.1 git revision 6c50cae388f9d9326bbb687ca0ecdc2df766f7f5 url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c-python/-/tree/development_0.9.3/2.2.1">git url</a>.
<br><br>
-Using binary_c with bit branch branch_david: git revision: "5834:20211216:a3146490e" url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c/-/tree/branch_david">git url</a>.
+Using binary_c with bit branch branch_david: git revision: "5845:20220107:201620bd7" url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c/-/tree/branch_david">git url</a>.
diff --git a/docs/build/html/_modules/binarycpython/utils/population_extensions/slurm.html b/docs/build/html/_modules/binarycpython/utils/population_extensions/slurm.html
index 8ebc6bda3..94663a6bd 100644
--- a/docs/build/html/_modules/binarycpython/utils/population_extensions/slurm.html
+++ b/docs/build/html/_modules/binarycpython/utils/population_extensions/slurm.html
@@ -535,9 +535,9 @@
provided by <a href="https://readthedocs.org">Read the Docs</a>.
<br><br>
-Generated on binarycpython git branch: development_0.9.3/2.2.1 git revision 8f3ed88f14c91d76a1fccf71294de4f0e9a160fd url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c-python/-/tree/development_0.9.3/2.2.1">git url</a>.
+Generated on binarycpython git branch: development_0.9.3/2.2.1 git revision 6c50cae388f9d9326bbb687ca0ecdc2df766f7f5 url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c-python/-/tree/development_0.9.3/2.2.1">git url</a>.
<br><br>
-Using binary_c with bit branch branch_david: git revision: "5834:20211216:a3146490e" url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c/-/tree/branch_david">git url</a>.
+Using binary_c with bit branch branch_david: git revision: "5845:20220107:201620bd7" url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c/-/tree/branch_david">git url</a>.
diff --git a/docs/build/html/_modules/binarycpython/utils/population_extensions/spacing_functions.html b/docs/build/html/_modules/binarycpython/utils/population_extensions/spacing_functions.html
index 4fa006f02..faec36a4a 100644
--- a/docs/build/html/_modules/binarycpython/utils/population_extensions/spacing_functions.html
+++ b/docs/build/html/_modules/binarycpython/utils/population_extensions/spacing_functions.html
@@ -164,13 +164,13 @@
<span class="sd"> Example:</span>
<span class="sd"> The following allocates 10 stars between 0.1 and 0.65, 20 stars between 0.65</span>
-<span class="sd"> and 0.85, and 10 stars between 0.85 and 10.0 Msun.</span>
+<span class="sd"> and 0.85, and 10 stars between 0.85 and 10.0 Msun::</span>
-<span class="sd"> samplerfunc="const_ranges((({},{},{}),({},{},{}),({},{},{})))".format(</span>
-<span class="sd"> 0.1,0.65,10,</span>
-<span class="sd"> 0.65,0.85,20,</span>
-<span class="sd"> 0.85,10.0,10</span>
-<span class="sd"> ),</span>
+<span class="sd"> samplerfunc="const_ranges((({},{},{}),({},{},{}),({},{},{})))".format(</span>
+<span class="sd"> 0.1, 0.65, 10,</span>
+<span class="sd"> 0.65, 0.85, 20,</span>
+<span class="sd"> 0.85, 10.0, 10</span>
+<span class="sd"> )</span>
<span class="sd"> """</span>
@@ -282,14 +282,13 @@
<span class="sd"> Array of masses.</span>
<span class="sd"> Example:</span>
-<span class="sd"> # these are lines set as options to Population.add_grid_value(...)</span>
+<span class="sd"> these are lines set as options to Population.add_grid_value(...)::</span>
-<span class="sd"> # linear time bins of 1Gyr</span>
-<span class="sd"> samplerfunc="self.const_dt(self,dt=1000,nres=100,mmin=0.07,mmax=2.0,showtable=True)"</span>
+<span class="sd"> # linear time bins of 1Gyr</span>
+<span class="sd"> samplerfunc="self.const_dt(self,dt=1000,nres=100,mmin=0.07,mmax=2.0,showtable=True)"</span>
-<span class="sd"> # logarithmic spacing in time, generally suitable for Galactic</span>
-<span class="sd"> # chemical evolution yield grids.</span>
-<span class="sd"> samplerfunc="self.const_dt(self,dlogt=0.1,nres=100,mmin=0.07,mmax=80.0,maxdm=((0.07,1.0,0.1),(1.0,10.0,1.0),(10.0,80.0,2.0)),showtable=True,logspacing=True,fsample=1.0/4.0)"</span>
+<span class="sd"> # logarithmic spacing in time, generally suitable for Galactic chemical evolution yield grids.</span>
+<span class="sd"> samplerfunc="self.const_dt(self,dlogt=0.1,nres=100,mmin=0.07,mmax=80.0,maxdm=((0.07,1.0,0.1),(1.0,10.0,1.0),(10.0,80.0,2.0)),showtable=True,logspacing=True,fsample=1.0/4.0)"</span>
<span class="sd"> """</span>
@@ -774,9 +773,9 @@
provided by <a href="https://readthedocs.org">Read the Docs</a>.
<br><br>
-Generated on binarycpython git branch: development_0.9.3/2.2.1 git revision 8f3ed88f14c91d76a1fccf71294de4f0e9a160fd url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c-python/-/tree/development_0.9.3/2.2.1">git url</a>.
+Generated on binarycpython git branch: development_0.9.3/2.2.1 git revision 6c50cae388f9d9326bbb687ca0ecdc2df766f7f5 url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c-python/-/tree/development_0.9.3/2.2.1">git url</a>.
<br><br>
-Using binary_c with bit branch branch_david: git revision: "5834:20211216:a3146490e" url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c/-/tree/branch_david">git url</a>.
+Using binary_c with bit branch branch_david: git revision: "5845:20220107:201620bd7" url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c/-/tree/branch_david">git url</a>.
diff --git a/docs/build/html/_modules/binarycpython/utils/population_extensions/version_info.html b/docs/build/html/_modules/binarycpython/utils/population_extensions/version_info.html
index 13fd66d54..f2690c76f 100644
--- a/docs/build/html/_modules/binarycpython/utils/population_extensions/version_info.html
+++ b/docs/build/html/_modules/binarycpython/utils/population_extensions/version_info.html
@@ -521,9 +521,9 @@
provided by <a href="https://readthedocs.org">Read the Docs</a>.
<br><br>
-Generated on binarycpython git branch: development_0.9.3/2.2.1 git revision 8f3ed88f14c91d76a1fccf71294de4f0e9a160fd url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c-python/-/tree/development_0.9.3/2.2.1">git url</a>.
+Generated on binarycpython git branch: development_0.9.3/2.2.1 git revision 6c50cae388f9d9326bbb687ca0ecdc2df766f7f5 url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c-python/-/tree/development_0.9.3/2.2.1">git url</a>.
<br><br>
-Using binary_c with bit branch branch_david: git revision: "5834:20211216:a3146490e" url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c/-/tree/branch_david">git url</a>.
+Using binary_c with bit branch branch_david: git revision: "5845:20220107:201620bd7" url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c/-/tree/branch_david">git url</a>.
diff --git a/docs/build/html/_modules/binarycpython/utils/run_system_wrapper.html b/docs/build/html/_modules/binarycpython/utils/run_system_wrapper.html
index 027bd014a..33a425fed 100644
--- a/docs/build/html/_modules/binarycpython/utils/run_system_wrapper.html
+++ b/docs/build/html/_modules/binarycpython/utils/run_system_wrapper.html
@@ -205,9 +205,9 @@
provided by <a href="https://readthedocs.org">Read the Docs</a>.
<br><br>
-Generated on binarycpython git branch: development_0.9.3/2.2.1 git revision 8f3ed88f14c91d76a1fccf71294de4f0e9a160fd url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c-python/-/tree/development_0.9.3/2.2.1">git url</a>.
+Generated on binarycpython git branch: development_0.9.3/2.2.1 git revision 6c50cae388f9d9326bbb687ca0ecdc2df766f7f5 url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c-python/-/tree/development_0.9.3/2.2.1">git url</a>.
<br><br>
-Using binary_c with bit branch branch_david: git revision: "5834:20211216:a3146490e" url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c/-/tree/branch_david">git url</a>.
+Using binary_c with bit branch branch_david: git revision: "5845:20220107:201620bd7" url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c/-/tree/branch_david">git url</a>.
diff --git a/docs/build/html/_modules/binarycpython/utils/useful_funcs.html b/docs/build/html/_modules/binarycpython/utils/useful_funcs.html
index d428d16c0..77508d21f 100644
--- a/docs/build/html/_modules/binarycpython/utils/useful_funcs.html
+++ b/docs/build/html/_modules/binarycpython/utils/useful_funcs.html
@@ -471,9 +471,9 @@
provided by <a href="https://readthedocs.org">Read the Docs</a>.
<br><br>
-Generated on binarycpython git branch: development_0.9.3/2.2.1 git revision 8f3ed88f14c91d76a1fccf71294de4f0e9a160fd url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c-python/-/tree/development_0.9.3/2.2.1">git url</a>.
+Generated on binarycpython git branch: development_0.9.3/2.2.1 git revision 6c50cae388f9d9326bbb687ca0ecdc2df766f7f5 url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c-python/-/tree/development_0.9.3/2.2.1">git url</a>.
<br><br>
-Using binary_c with bit branch branch_david: git revision: "5834:20211216:a3146490e" url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c/-/tree/branch_david">git url</a>.
+Using binary_c with bit branch branch_david: git revision: "5845:20220107:201620bd7" url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c/-/tree/branch_david">git url</a>.
diff --git a/docs/build/html/_modules/index.html b/docs/build/html/_modules/index.html
index 38d101db1..d5f56e161 100644
--- a/docs/build/html/_modules/index.html
+++ b/docs/build/html/_modules/index.html
@@ -77,11 +77,13 @@
<li><a href="binarycpython/utils/grid.html">binarycpython.utils.grid</a></li>
<li><a href="binarycpython/utils/plot_functions.html">binarycpython.utils.plot_functions</a></li>
<li><a href="binarycpython/utils/population_extensions/HPC.html">binarycpython.utils.population_extensions.HPC</a></li>
+<li><a href="binarycpython/utils/population_extensions/Moe_di_Stefano_2017.html">binarycpython.utils.population_extensions.Moe_di_Stefano_2017</a></li>
<li><a href="binarycpython/utils/population_extensions/analytics.html">binarycpython.utils.population_extensions.analytics</a></li>
<li><a href="binarycpython/utils/population_extensions/cache.html">binarycpython.utils.population_extensions.cache</a></li>
<li><a href="binarycpython/utils/population_extensions/condor.html">binarycpython.utils.population_extensions.condor</a></li>
<li><a href="binarycpython/utils/population_extensions/dataIO.html">binarycpython.utils.population_extensions.dataIO</a></li>
<li><a href="binarycpython/utils/population_extensions/distribution_functions.html">binarycpython.utils.population_extensions.distribution_functions</a></li>
+<li><a href="binarycpython/utils/population_extensions/grid_logging.html">binarycpython.utils.population_extensions.grid_logging</a></li>
<li><a href="binarycpython/utils/population_extensions/grid_options_defaults.html">binarycpython.utils.population_extensions.grid_options_defaults</a></li>
<li><a href="binarycpython/utils/population_extensions/gridcode.html">binarycpython.utils.population_extensions.gridcode</a></li>
<li><a href="binarycpython/utils/population_extensions/metadata.html">binarycpython.utils.population_extensions.metadata</a></li>
@@ -107,9 +109,9 @@
provided by <a href="https://readthedocs.org">Read the Docs</a>.
<br><br>
-Generated on binarycpython git branch: development_0.9.3/2.2.1 git revision 8f3ed88f14c91d76a1fccf71294de4f0e9a160fd url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c-python/-/tree/development_0.9.3/2.2.1">git url</a>.
+Generated on binarycpython git branch: development_0.9.3/2.2.1 git revision 6c50cae388f9d9326bbb687ca0ecdc2df766f7f5 url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c-python/-/tree/development_0.9.3/2.2.1">git url</a>.
<br><br>
-Using binary_c with bit branch branch_david: git revision: "5834:20211216:a3146490e" url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c/-/tree/branch_david">git url</a>.
+Using binary_c with bit branch branch_david: git revision: "5845:20220107:201620bd7" url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c/-/tree/branch_david">git url</a>.
diff --git a/docs/build/html/_sources/binary_c_parameters.rst.txt b/docs/build/html/_sources/binary_c_parameters.rst.txt
index 8d359425f..2ecbfde05 100644
--- a/docs/build/html/_sources/binary_c_parameters.rst.txt
+++ b/docs/build/html/_sources/binary_c_parameters.rst.txt
@@ -4,7 +4,7 @@ The following chapter contains all the parameters that the current version of bi
This information was obtained by the following binary_c build:
- **binary_c git branch**: branch_david **binary_c git revision**: 5834:20211216:a3146490e **Built on**: Dec 20 2021 20:33:01
+ **binary_c git branch**: branch_david **binary_c git revision**: 5845:20220107:201620bd7 **Built on**: Jan 7 2022 12:15:12
Section: stars
@@ -1991,7 +1991,7 @@ Section: binary
| **Default value**: 1e-06
| **Parameter**: cbdisc_minimum_fRing
-| **Description**: Circumbinary disc minimum fRing. If the disc becomes a ring, and fRing = |Rout/Rin-1| < this value (and this value is non-zero), the disc is evaporated instantly. Requires DISCS.
+| **Description**: Circumbinary disc minimum fRing. If the disc becomes a ring, and fRing = abs(Rout/Rin-1) < this value (and this value is non-zero), the disc is evaporated instantly. Requires DISCS.
| **Parameter input type**: Float
| **Default value**: 0.2
diff --git a/docs/build/html/_sources/examples/old/basic_example.ipynb.txt b/docs/build/html/_sources/examples/old/basic_example.ipynb.txt
index 9078cfcb5..7146b9767 100644
--- a/docs/build/html/_sources/examples/old/basic_example.ipynb.txt
+++ b/docs/build/html/_sources/examples/old/basic_example.ipynb.txt
@@ -1,5 +1,14 @@
{
"cells": [
+ {
+ "cell_type": "markdown",
+ "id": "c09b9f85-5250-4fd2-8142-bb8097d138b5",
+ "metadata": {},
+ "source": [
+ "# Basic example\n",
+ "Running a single system"
+ ]
+ },
{
"cell_type": "code",
"execution_count": 1,
@@ -106,7 +115,7 @@
],
"metadata": {
"kernelspec": {
- "display_name": "Python 3",
+ "display_name": "Python 3 (ipykernel)",
"language": "python",
"name": "python3"
},
@@ -120,7 +129,7 @@
"name": "python",
"nbconvert_exporter": "python",
"pygments_lexer": "ipython3",
- "version": "3.6.4"
+ "version": "3.9.9"
}
},
"nbformat": 4,
diff --git a/docs/build/html/_sources/examples/old/workshop_example_notebook.ipynb.txt b/docs/build/html/_sources/examples/old/workshop_example_notebook.ipynb.txt
index 4eca58797..78d0860ad 100644
--- a/docs/build/html/_sources/examples/old/workshop_example_notebook.ipynb.txt
+++ b/docs/build/html/_sources/examples/old/workshop_example_notebook.ipynb.txt
@@ -619,7 +619,7 @@
],
"metadata": {
"kernelspec": {
- "display_name": "Python 3",
+ "display_name": "Python 3 (ipykernel)",
"language": "python",
"name": "python3"
},
@@ -633,7 +633,7 @@
"name": "python",
"nbconvert_exporter": "python",
"pygments_lexer": "ipython3",
- "version": "3.6.4"
+ "version": "3.9.9"
}
},
"nbformat": 4,
diff --git a/docs/build/html/_sources/grid.rst.txt b/docs/build/html/_sources/grid.rst.txt
index 43afcb03c..5122d6740 100644
--- a/docs/build/html/_sources/grid.rst.txt
+++ b/docs/build/html/_sources/grid.rst.txt
@@ -1,5 +1,5 @@
-Population\_class module
-========================
+Population class module
+=======================
.. automodule:: binarycpython.utils.grid
:members:
diff --git a/docs/build/html/_sources/population_extensions/Moe_di_Stefano_2017.rst.txt b/docs/build/html/_sources/population_extensions/Moe_di_Stefano_2017.rst.txt
new file mode 100644
index 000000000..703e95162
--- /dev/null
+++ b/docs/build/html/_sources/population_extensions/Moe_di_Stefano_2017.rst.txt
@@ -0,0 +1,7 @@
+Population class extension: Moe\_di\_Stefano\_2017 module
+=========================================================
+
+.. automodule:: binarycpython.utils.population_extensions.Moe_di_Stefano_2017
+ :members:
+ :undoc-members:
+ :show-inheritance:
diff --git a/docs/build/html/_sources/population_extensions/grid_logging.rst.txt b/docs/build/html/_sources/population_extensions/grid_logging.rst.txt
new file mode 100644
index 000000000..dc607c6ea
--- /dev/null
+++ b/docs/build/html/_sources/population_extensions/grid_logging.rst.txt
@@ -0,0 +1,7 @@
+Population class extension: grid\_logging module
+================================================
+
+.. automodule:: binarycpython.utils.population_extensions.grid_logging
+ :members:
+ :undoc-members:
+ :show-inheritance:
diff --git a/docs/build/html/binary_c_parameters.html b/docs/build/html/binary_c_parameters.html
index 465e8f6d2..298481c7c 100644
--- a/docs/build/html/binary_c_parameters.html
+++ b/docs/build/html/binary_c_parameters.html
@@ -111,7 +111,7 @@
<h1>Binary_c parameters<a class="headerlink" href="#binary-c-parameters" title="Permalink to this headline">ïƒ</a></h1>
<p>The following chapter contains all the parameters that the current version of binary_c can handle, along with their descriptions and other properties.</p>
<dl class="simple">
-<dt>This information was obtained by the following binary_c build:</dt><dd><p><strong>binary_c git branch</strong>: branch_david <strong>binary_c git revision</strong>: 5834:20211216:a3146490e <strong>Built on</strong>: Dec 20 2021 20:33:01</p>
+<dt>This information was obtained by the following binary_c build:</dt><dd><p><strong>binary_c git branch</strong>: branch_david <strong>binary_c git revision</strong>: 5845:20220107:201620bd7 <strong>Built on</strong>: Jan 7 2022 12:15:12</p>
</dd>
</dl>
<section id="section-stars">
@@ -2469,7 +2469,7 @@
</div>
<div class="line-block">
<div class="line"><strong>Parameter</strong>: cbdisc_minimum_fRing</div>
-<div class="line"><strong>Description</strong>: Circumbinary disc minimum fRing. If the disc becomes a ring, and fRing = <a href="#id1"><span class="problematic" id="id2">|Rout/Rin-1|</span></a> < this value (and this value is non-zero), the disc is evaporated instantly. Requires DISCS.</div>
+<div class="line"><strong>Description</strong>: Circumbinary disc minimum fRing. If the disc becomes a ring, and fRing = abs(Rout/Rin-1) < this value (and this value is non-zero), the disc is evaporated instantly. Requires DISCS.</div>
<div class="line"><strong>Parameter input type</strong>: Float</div>
<div class="line"><strong>Default value</strong>: 0.2</div>
</div>
@@ -3506,9 +3506,9 @@
provided by <a href="https://readthedocs.org">Read the Docs</a>.
<br><br>
-Generated on binarycpython git branch: development_0.9.3/2.2.1 git revision 8f3ed88f14c91d76a1fccf71294de4f0e9a160fd url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c-python/-/tree/development_0.9.3/2.2.1">git url</a>.
+Generated on binarycpython git branch: development_0.9.3/2.2.1 git revision 6c50cae388f9d9326bbb687ca0ecdc2df766f7f5 url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c-python/-/tree/development_0.9.3/2.2.1">git url</a>.
<br><br>
-Using binary_c with bit branch branch_david: git revision: "5834:20211216:a3146490e" url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c/-/tree/branch_david">git url</a>.
+Using binary_c with bit branch branch_david: git revision: "5845:20220107:201620bd7" url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c/-/tree/branch_david">git url</a>.
diff --git a/docs/build/html/custom_logging_functions.html b/docs/build/html/custom_logging_functions.html
index a3b0c4d2e..e58b9b829 100644
--- a/docs/build/html/custom_logging_functions.html
+++ b/docs/build/html/custom_logging_functions.html
@@ -46,7 +46,7 @@
<li class="toctree-l2"><a class="reference internal" href="dicts.html">dicts module</a></li>
<li class="toctree-l2"><a class="reference internal" href="ensemble.html">ensemble module</a></li>
<li class="toctree-l2"><a class="reference internal" href="functions.html">functions module</a></li>
-<li class="toctree-l2"><a class="reference internal" href="grid.html">Population_class module</a></li>
+<li class="toctree-l2"><a class="reference internal" href="grid.html">Population class module</a></li>
<li class="toctree-l2"><a class="reference internal" href="plot_functions.html">plot_functions module</a></li>
<li class="toctree-l2"><a class="reference internal" href="population_extensions/analytics.html">Population class extension: analytics module</a></li>
<li class="toctree-l2"><a class="reference internal" href="population_extensions/cache.html">Population class extension: cache module</a></li>
@@ -54,9 +54,11 @@
<li class="toctree-l2"><a class="reference internal" href="population_extensions/dataIO.html">Population class extension: dataIO module</a></li>
<li class="toctree-l2"><a class="reference internal" href="population_extensions/distribution_functions.html">Population class extension: distribution_functions module</a></li>
<li class="toctree-l2"><a class="reference internal" href="population_extensions/gridcode.html">Population class extension: gridcode module</a></li>
+<li class="toctree-l2"><a class="reference internal" href="population_extensions/grid_logging.html">Population class extension: grid_logging module</a></li>
<li class="toctree-l2"><a class="reference internal" href="population_extensions/grid_options_defaults.html">Population class extension: grid_options_defaults module</a></li>
<li class="toctree-l2"><a class="reference internal" href="population_extensions/HPC.html">Population class extension: HPC module</a></li>
<li class="toctree-l2"><a class="reference internal" href="population_extensions/metadata.html">Population class extension: metadata module</a></li>
+<li class="toctree-l2"><a class="reference internal" href="population_extensions/Moe_di_Stefano_2017.html">Population class extension: Moe_di_Stefano_2017 module</a></li>
<li class="toctree-l2"><a class="reference internal" href="population_extensions/slurm.html">Population class extension: slurm module</a></li>
<li class="toctree-l2"><a class="reference internal" href="population_extensions/spacing_functions.html">Population class extension: spacing_functions module</a></li>
<li class="toctree-l2"><a class="reference internal" href="population_extensions/version_info.html">Population class extension: version_info module</a></li>
@@ -327,9 +329,9 @@ I recommend using this in function in combination with a function that generates
provided by <a href="https://readthedocs.org">Read the Docs</a>.
<br><br>
-Generated on binarycpython git branch: development_0.9.3/2.2.1 git revision 8f3ed88f14c91d76a1fccf71294de4f0e9a160fd url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c-python/-/tree/development_0.9.3/2.2.1">git url</a>.
+Generated on binarycpython git branch: development_0.9.3/2.2.1 git revision 6c50cae388f9d9326bbb687ca0ecdc2df766f7f5 url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c-python/-/tree/development_0.9.3/2.2.1">git url</a>.
<br><br>
-Using binary_c with bit branch branch_david: git revision: "5834:20211216:a3146490e" url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c/-/tree/branch_david">git url</a>.
+Using binary_c with bit branch branch_david: git revision: "5845:20220107:201620bd7" url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c/-/tree/branch_david">git url</a>.
diff --git a/docs/build/html/dicts.html b/docs/build/html/dicts.html
index 74ca6ee1e..5ea93988d 100644
--- a/docs/build/html/dicts.html
+++ b/docs/build/html/dicts.html
@@ -46,7 +46,7 @@
<li class="toctree-l2 current"><a class="current reference internal" href="#">dicts module</a></li>
<li class="toctree-l2"><a class="reference internal" href="ensemble.html">ensemble module</a></li>
<li class="toctree-l2"><a class="reference internal" href="functions.html">functions module</a></li>
-<li class="toctree-l2"><a class="reference internal" href="grid.html">Population_class module</a></li>
+<li class="toctree-l2"><a class="reference internal" href="grid.html">Population class module</a></li>
<li class="toctree-l2"><a class="reference internal" href="plot_functions.html">plot_functions module</a></li>
<li class="toctree-l2"><a class="reference internal" href="population_extensions/analytics.html">Population class extension: analytics module</a></li>
<li class="toctree-l2"><a class="reference internal" href="population_extensions/cache.html">Population class extension: cache module</a></li>
@@ -54,9 +54,11 @@
<li class="toctree-l2"><a class="reference internal" href="population_extensions/dataIO.html">Population class extension: dataIO module</a></li>
<li class="toctree-l2"><a class="reference internal" href="population_extensions/distribution_functions.html">Population class extension: distribution_functions module</a></li>
<li class="toctree-l2"><a class="reference internal" href="population_extensions/gridcode.html">Population class extension: gridcode module</a></li>
+<li class="toctree-l2"><a class="reference internal" href="population_extensions/grid_logging.html">Population class extension: grid_logging module</a></li>
<li class="toctree-l2"><a class="reference internal" href="population_extensions/grid_options_defaults.html">Population class extension: grid_options_defaults module</a></li>
<li class="toctree-l2"><a class="reference internal" href="population_extensions/HPC.html">Population class extension: HPC module</a></li>
<li class="toctree-l2"><a class="reference internal" href="population_extensions/metadata.html">Population class extension: metadata module</a></li>
+<li class="toctree-l2"><a class="reference internal" href="population_extensions/Moe_di_Stefano_2017.html">Population class extension: Moe_di_Stefano_2017 module</a></li>
<li class="toctree-l2"><a class="reference internal" href="population_extensions/slurm.html">Population class extension: slurm module</a></li>
<li class="toctree-l2"><a class="reference internal" href="population_extensions/spacing_functions.html">Population class extension: spacing_functions module</a></li>
<li class="toctree-l2"><a class="reference internal" href="population_extensions/version_info.html">Population class extension: version_info module</a></li>
@@ -460,9 +462,9 @@ If that results in an empty dict, the dict will be removed too.</p>
provided by <a href="https://readthedocs.org">Read the Docs</a>.
<br><br>
-Generated on binarycpython git branch: development_0.9.3/2.2.1 git revision 8f3ed88f14c91d76a1fccf71294de4f0e9a160fd url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c-python/-/tree/development_0.9.3/2.2.1">git url</a>.
+Generated on binarycpython git branch: development_0.9.3/2.2.1 git revision 6c50cae388f9d9326bbb687ca0ecdc2df766f7f5 url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c-python/-/tree/development_0.9.3/2.2.1">git url</a>.
<br><br>
-Using binary_c with bit branch branch_david: git revision: "5834:20211216:a3146490e" url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c/-/tree/branch_david">git url</a>.
+Using binary_c with bit branch branch_david: git revision: "5845:20220107:201620bd7" url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c/-/tree/branch_david">git url</a>.
diff --git a/docs/build/html/ensemble.html b/docs/build/html/ensemble.html
index df7f57658..30b2815a5 100644
--- a/docs/build/html/ensemble.html
+++ b/docs/build/html/ensemble.html
@@ -46,7 +46,7 @@
<li class="toctree-l2"><a class="reference internal" href="dicts.html">dicts module</a></li>
<li class="toctree-l2 current"><a class="current reference internal" href="#">ensemble module</a></li>
<li class="toctree-l2"><a class="reference internal" href="functions.html">functions module</a></li>
-<li class="toctree-l2"><a class="reference internal" href="grid.html">Population_class module</a></li>
+<li class="toctree-l2"><a class="reference internal" href="grid.html">Population class module</a></li>
<li class="toctree-l2"><a class="reference internal" href="plot_functions.html">plot_functions module</a></li>
<li class="toctree-l2"><a class="reference internal" href="population_extensions/analytics.html">Population class extension: analytics module</a></li>
<li class="toctree-l2"><a class="reference internal" href="population_extensions/cache.html">Population class extension: cache module</a></li>
@@ -54,9 +54,11 @@
<li class="toctree-l2"><a class="reference internal" href="population_extensions/dataIO.html">Population class extension: dataIO module</a></li>
<li class="toctree-l2"><a class="reference internal" href="population_extensions/distribution_functions.html">Population class extension: distribution_functions module</a></li>
<li class="toctree-l2"><a class="reference internal" href="population_extensions/gridcode.html">Population class extension: gridcode module</a></li>
+<li class="toctree-l2"><a class="reference internal" href="population_extensions/grid_logging.html">Population class extension: grid_logging module</a></li>
<li class="toctree-l2"><a class="reference internal" href="population_extensions/grid_options_defaults.html">Population class extension: grid_options_defaults module</a></li>
<li class="toctree-l2"><a class="reference internal" href="population_extensions/HPC.html">Population class extension: HPC module</a></li>
<li class="toctree-l2"><a class="reference internal" href="population_extensions/metadata.html">Population class extension: metadata module</a></li>
+<li class="toctree-l2"><a class="reference internal" href="population_extensions/Moe_di_Stefano_2017.html">Population class extension: Moe_di_Stefano_2017 module</a></li>
<li class="toctree-l2"><a class="reference internal" href="population_extensions/slurm.html">Population class extension: slurm module</a></li>
<li class="toctree-l2"><a class="reference internal" href="population_extensions/spacing_functions.html">Population class extension: spacing_functions module</a></li>
<li class="toctree-l2"><a class="reference internal" href="population_extensions/version_info.html">Population class extension: version_info module</a></li>
@@ -273,9 +275,9 @@ and return its contents to as a Python dictionary.</p>
provided by <a href="https://readthedocs.org">Read the Docs</a>.
<br><br>
-Generated on binarycpython git branch: development_0.9.3/2.2.1 git revision 8f3ed88f14c91d76a1fccf71294de4f0e9a160fd url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c-python/-/tree/development_0.9.3/2.2.1">git url</a>.
+Generated on binarycpython git branch: development_0.9.3/2.2.1 git revision 6c50cae388f9d9326bbb687ca0ecdc2df766f7f5 url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c-python/-/tree/development_0.9.3/2.2.1">git url</a>.
<br><br>
-Using binary_c with bit branch branch_david: git revision: "5834:20211216:a3146490e" url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c/-/tree/branch_david">git url</a>.
+Using binary_c with bit branch branch_david: git revision: "5845:20220107:201620bd7" url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c/-/tree/branch_david">git url</a>.
diff --git a/docs/build/html/example_notebooks.html b/docs/build/html/example_notebooks.html
index 0ab38526e..935a840fe 100644
--- a/docs/build/html/example_notebooks.html
+++ b/docs/build/html/example_notebooks.html
@@ -215,9 +215,9 @@
provided by <a href="https://readthedocs.org">Read the Docs</a>.
<br><br>
-Generated on binarycpython git branch: development_0.9.3/2.2.1 git revision 8f3ed88f14c91d76a1fccf71294de4f0e9a160fd url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c-python/-/tree/development_0.9.3/2.2.1">git url</a>.
+Generated on binarycpython git branch: development_0.9.3/2.2.1 git revision 6c50cae388f9d9326bbb687ca0ecdc2df766f7f5 url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c-python/-/tree/development_0.9.3/2.2.1">git url</a>.
<br><br>
-Using binary_c with bit branch branch_david: git revision: "5834:20211216:a3146490e" url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c/-/tree/branch_david">git url</a>.
+Using binary_c with bit branch branch_david: git revision: "5845:20220107:201620bd7" url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c/-/tree/branch_david">git url</a>.
diff --git a/docs/build/html/examples/notebook_BHBH.html b/docs/build/html/examples/notebook_BHBH.html
index 1dd8f24f1..feed4128c 100644
--- a/docs/build/html/examples/notebook_BHBH.html
+++ b/docs/build/html/examples/notebook_BHBH.html
@@ -5574,9 +5574,9 @@ system 2 / 100
provided by <a href="https://readthedocs.org">Read the Docs</a>.
<br><br>
-Generated on binarycpython git branch: development_0.9.3/2.2.1 git revision 8f3ed88f14c91d76a1fccf71294de4f0e9a160fd url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c-python/-/tree/development_0.9.3/2.2.1">git url</a>.
+Generated on binarycpython git branch: development_0.9.3/2.2.1 git revision 6c50cae388f9d9326bbb687ca0ecdc2df766f7f5 url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c-python/-/tree/development_0.9.3/2.2.1">git url</a>.
<br><br>
-Using binary_c with bit branch branch_david: git revision: "5834:20211216:a3146490e" url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c/-/tree/branch_david">git url</a>.
+Using binary_c with bit branch branch_david: git revision: "5845:20220107:201620bd7" url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c/-/tree/branch_david">git url</a>.
diff --git a/docs/build/html/examples/notebook_HRD.html b/docs/build/html/examples/notebook_HRD.html
index 09e948847..688ee40a7 100644
--- a/docs/build/html/examples/notebook_HRD.html
+++ b/docs/build/html/examples/notebook_HRD.html
@@ -1366,9 +1366,9 @@ very start.</p>
provided by <a href="https://readthedocs.org">Read the Docs</a>.
<br><br>
-Generated on binarycpython git branch: development_0.9.3/2.2.1 git revision 8f3ed88f14c91d76a1fccf71294de4f0e9a160fd url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c-python/-/tree/development_0.9.3/2.2.1">git url</a>.
+Generated on binarycpython git branch: development_0.9.3/2.2.1 git revision 6c50cae388f9d9326bbb687ca0ecdc2df766f7f5 url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c-python/-/tree/development_0.9.3/2.2.1">git url</a>.
<br><br>
-Using binary_c with bit branch branch_david: git revision: "5834:20211216:a3146490e" url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c/-/tree/branch_david">git url</a>.
+Using binary_c with bit branch branch_david: git revision: "5845:20220107:201620bd7" url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c/-/tree/branch_david">git url</a>.
diff --git a/docs/build/html/examples/notebook_api_functionality.html b/docs/build/html/examples/notebook_api_functionality.html
index 8f82fc965..7307f9af1 100644
--- a/docs/build/html/examples/notebook_api_functionality.html
+++ b/docs/build/html/examples/notebook_api_functionality.html
@@ -1291,9 +1291,9 @@ MAXIMUM MASS RATIO 0.0141
provided by <a href="https://readthedocs.org">Read the Docs</a>.
<br><br>
-Generated on binarycpython git branch: development_0.9.3/2.2.1 git revision 8f3ed88f14c91d76a1fccf71294de4f0e9a160fd url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c-python/-/tree/development_0.9.3/2.2.1">git url</a>.
+Generated on binarycpython git branch: development_0.9.3/2.2.1 git revision 6c50cae388f9d9326bbb687ca0ecdc2df766f7f5 url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c-python/-/tree/development_0.9.3/2.2.1">git url</a>.
<br><br>
-Using binary_c with bit branch branch_david: git revision: "5834:20211216:a3146490e" url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c/-/tree/branch_david">git url</a>.
+Using binary_c with bit branch branch_david: git revision: "5845:20220107:201620bd7" url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c/-/tree/branch_david">git url</a>.
diff --git a/docs/build/html/examples/notebook_common_envelope_evolution.html b/docs/build/html/examples/notebook_common_envelope_evolution.html
index bdf4cf3c3..142415890 100644
--- a/docs/build/html/examples/notebook_common_envelope_evolution.html
+++ b/docs/build/html/examples/notebook_common_envelope_evolution.html
@@ -1131,9 +1131,9 @@ Text(0, 0.5, 'Number of stars')
provided by <a href="https://readthedocs.org">Read the Docs</a>.
<br><br>
-Generated on binarycpython git branch: development_0.9.3/2.2.1 git revision 8f3ed88f14c91d76a1fccf71294de4f0e9a160fd url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c-python/-/tree/development_0.9.3/2.2.1">git url</a>.
+Generated on binarycpython git branch: development_0.9.3/2.2.1 git revision 6c50cae388f9d9326bbb687ca0ecdc2df766f7f5 url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c-python/-/tree/development_0.9.3/2.2.1">git url</a>.
<br><br>
-Using binary_c with bit branch branch_david: git revision: "5834:20211216:a3146490e" url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c/-/tree/branch_david">git url</a>.
+Using binary_c with bit branch branch_david: git revision: "5845:20220107:201620bd7" url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c/-/tree/branch_david">git url</a>.
diff --git a/docs/build/html/examples/notebook_custom_logging.html b/docs/build/html/examples/notebook_custom_logging.html
index b606a0253..699682ba6 100644
--- a/docs/build/html/examples/notebook_custom_logging.html
+++ b/docs/build/html/examples/notebook_custom_logging.html
@@ -785,9 +785,9 @@ EXAMPLE_SN 1.050651207308e+01 1.59452 9.34213 20 12 13 5 1 6.55458 4
provided by <a href="https://readthedocs.org">Read the Docs</a>.
<br><br>
-Generated on binarycpython git branch: development_0.9.3/2.2.1 git revision 8f3ed88f14c91d76a1fccf71294de4f0e9a160fd url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c-python/-/tree/development_0.9.3/2.2.1">git url</a>.
+Generated on binarycpython git branch: development_0.9.3/2.2.1 git revision 6c50cae388f9d9326bbb687ca0ecdc2df766f7f5 url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c-python/-/tree/development_0.9.3/2.2.1">git url</a>.
<br><br>
-Using binary_c with bit branch branch_david: git revision: "5834:20211216:a3146490e" url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c/-/tree/branch_david">git url</a>.
+Using binary_c with bit branch branch_david: git revision: "5845:20220107:201620bd7" url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c/-/tree/branch_david">git url</a>.
diff --git a/docs/build/html/examples/notebook_extra_features.html b/docs/build/html/examples/notebook_extra_features.html
index db74e51f7..1ce21a285 100644
--- a/docs/build/html/examples/notebook_extra_features.html
+++ b/docs/build/html/examples/notebook_extra_features.html
@@ -537,9 +537,9 @@ dict_keys(['networks', 'isotopes', 'argpairs', 'ense
provided by <a href="https://readthedocs.org">Read the Docs</a>.
<br><br>
-Generated on binarycpython git branch: development_0.9.3/2.2.1 git revision 8f3ed88f14c91d76a1fccf71294de4f0e9a160fd url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c-python/-/tree/development_0.9.3/2.2.1">git url</a>.
+Generated on binarycpython git branch: development_0.9.3/2.2.1 git revision 6c50cae388f9d9326bbb687ca0ecdc2df766f7f5 url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c-python/-/tree/development_0.9.3/2.2.1">git url</a>.
<br><br>
-Using binary_c with bit branch branch_david: git revision: "5834:20211216:a3146490e" url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c/-/tree/branch_david">git url</a>.
+Using binary_c with bit branch branch_david: git revision: "5845:20220107:201620bd7" url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c/-/tree/branch_david">git url</a>.
diff --git a/docs/build/html/examples/notebook_individual_systems.html b/docs/build/html/examples/notebook_individual_systems.html
index a8bf79c04..316e2c1db 100644
--- a/docs/build/html/examples/notebook_individual_systems.html
+++ b/docs/build/html/examples/notebook_individual_systems.html
@@ -839,9 +839,9 @@ SINGLE_STAR_LIFETIME 15 14.9927
provided by <a href="https://readthedocs.org">Read the Docs</a>.
<br><br>
-Generated on binarycpython git branch: development_0.9.3/2.2.1 git revision 8f3ed88f14c91d76a1fccf71294de4f0e9a160fd url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c-python/-/tree/development_0.9.3/2.2.1">git url</a>.
+Generated on binarycpython git branch: development_0.9.3/2.2.1 git revision 6c50cae388f9d9326bbb687ca0ecdc2df766f7f5 url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c-python/-/tree/development_0.9.3/2.2.1">git url</a>.
<br><br>
-Using binary_c with bit branch branch_david: git revision: "5834:20211216:a3146490e" url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c/-/tree/branch_david">git url</a>.
+Using binary_c with bit branch branch_david: git revision: "5845:20220107:201620bd7" url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c/-/tree/branch_david">git url</a>.
diff --git a/docs/build/html/examples/notebook_luminosity_function_binaries.html b/docs/build/html/examples/notebook_luminosity_function_binaries.html
index 997b0a4e0..249370faf 100644
--- a/docs/build/html/examples/notebook_luminosity_function_binaries.html
+++ b/docs/build/html/examples/notebook_luminosity_function_binaries.html
@@ -1198,9 +1198,9 @@ Done population run!
provided by <a href="https://readthedocs.org">Read the Docs</a>.
<br><br>
-Generated on binarycpython git branch: development_0.9.3/2.2.1 git revision 8f3ed88f14c91d76a1fccf71294de4f0e9a160fd url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c-python/-/tree/development_0.9.3/2.2.1">git url</a>.
+Generated on binarycpython git branch: development_0.9.3/2.2.1 git revision 6c50cae388f9d9326bbb687ca0ecdc2df766f7f5 url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c-python/-/tree/development_0.9.3/2.2.1">git url</a>.
<br><br>
-Using binary_c with bit branch branch_david: git revision: "5834:20211216:a3146490e" url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c/-/tree/branch_david">git url</a>.
+Using binary_c with bit branch branch_david: git revision: "5845:20220107:201620bd7" url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c/-/tree/branch_david">git url</a>.
diff --git a/docs/build/html/examples/notebook_luminosity_function_single.html b/docs/build/html/examples/notebook_luminosity_function_single.html
index a519cd547..400e843f1 100644
--- a/docs/build/html/examples/notebook_luminosity_function_single.html
+++ b/docs/build/html/examples/notebook_luminosity_function_single.html
@@ -855,9 +855,9 @@ works perfectly well.</p>
provided by <a href="https://readthedocs.org">Read the Docs</a>.
<br><br>
-Generated on binarycpython git branch: development_0.9.3/2.2.1 git revision 8f3ed88f14c91d76a1fccf71294de4f0e9a160fd url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c-python/-/tree/development_0.9.3/2.2.1">git url</a>.
+Generated on binarycpython git branch: development_0.9.3/2.2.1 git revision 6c50cae388f9d9326bbb687ca0ecdc2df766f7f5 url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c-python/-/tree/development_0.9.3/2.2.1">git url</a>.
<br><br>
-Using binary_c with bit branch branch_david: git revision: "5834:20211216:a3146490e" url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c/-/tree/branch_david">git url</a>.
+Using binary_c with bit branch branch_david: git revision: "5845:20220107:201620bd7" url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c/-/tree/branch_david">git url</a>.
diff --git a/docs/build/html/examples/notebook_massive_remnants.html b/docs/build/html/examples/notebook_massive_remnants.html
index a75e2efaa..d845063bc 100644
--- a/docs/build/html/examples/notebook_massive_remnants.html
+++ b/docs/build/html/examples/notebook_massive_remnants.html
@@ -960,9 +960,9 @@ There were no errors found in this run.
provided by <a href="https://readthedocs.org">Read the Docs</a>.
<br><br>
-Generated on binarycpython git branch: development_0.9.3/2.2.1 git revision 8f3ed88f14c91d76a1fccf71294de4f0e9a160fd url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c-python/-/tree/development_0.9.3/2.2.1">git url</a>.
+Generated on binarycpython git branch: development_0.9.3/2.2.1 git revision 6c50cae388f9d9326bbb687ca0ecdc2df766f7f5 url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c-python/-/tree/development_0.9.3/2.2.1">git url</a>.
<br><br>
-Using binary_c with bit branch branch_david: git revision: "5834:20211216:a3146490e" url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c/-/tree/branch_david">git url</a>.
+Using binary_c with bit branch branch_david: git revision: "5845:20220107:201620bd7" url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c/-/tree/branch_david">git url</a>.
diff --git a/docs/build/html/examples/notebook_population.html b/docs/build/html/examples/notebook_population.html
index c018de499..f88d03f8e 100644
--- a/docs/build/html/examples/notebook_population.html
+++ b/docs/build/html/examples/notebook_population.html
@@ -1414,9 +1414,9 @@ time mass_1 zams_mass_1 mass_2 zams_mass_2 stellar_type_1 prev_stellar_type_1 st
provided by <a href="https://readthedocs.org">Read the Docs</a>.
<br><br>
-Generated on binarycpython git branch: development_0.9.3/2.2.1 git revision 8f3ed88f14c91d76a1fccf71294de4f0e9a160fd url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c-python/-/tree/development_0.9.3/2.2.1">git url</a>.
+Generated on binarycpython git branch: development_0.9.3/2.2.1 git revision 6c50cae388f9d9326bbb687ca0ecdc2df766f7f5 url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c-python/-/tree/development_0.9.3/2.2.1">git url</a>.
<br><br>
-Using binary_c with bit branch branch_david: git revision: "5834:20211216:a3146490e" url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c/-/tree/branch_david">git url</a>.
+Using binary_c with bit branch branch_david: git revision: "5845:20220107:201620bd7" url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c/-/tree/branch_david">git url</a>.
diff --git a/docs/build/html/examples/notebook_solar_system.html b/docs/build/html/examples/notebook_solar_system.html
index 16bacc273..e5ebc0445 100644
--- a/docs/build/html/examples/notebook_solar_system.html
+++ b/docs/build/html/examples/notebook_solar_system.html
@@ -614,9 +614,9 @@ div.rendered_html tbody tr:hover {
provided by <a href="https://readthedocs.org">Read the Docs</a>.
<br><br>
-Generated on binarycpython git branch: development_0.9.3/2.2.1 git revision 8f3ed88f14c91d76a1fccf71294de4f0e9a160fd url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c-python/-/tree/development_0.9.3/2.2.1">git url</a>.
+Generated on binarycpython git branch: development_0.9.3/2.2.1 git revision 6c50cae388f9d9326bbb687ca0ecdc2df766f7f5 url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c-python/-/tree/development_0.9.3/2.2.1">git url</a>.
<br><br>
-Using binary_c with bit branch branch_david: git revision: "5834:20211216:a3146490e" url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c/-/tree/branch_david">git url</a>.
+Using binary_c with bit branch branch_david: git revision: "5845:20220107:201620bd7" url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c/-/tree/branch_david">git url</a>.
diff --git a/docs/build/html/examples/old/basic_example.html b/docs/build/html/examples/old/basic_example.html
index 73a0d5c2d..7084f4144 100644
--- a/docs/build/html/examples/old/basic_example.html
+++ b/docs/build/html/examples/old/basic_example.html
@@ -4,7 +4,7 @@
<meta charset="utf-8" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
<meta name="viewport" content="width=device-width, initial-scale=1.0" />
- <title><no title> — binary_c-python documentation</title>
+ <title>Basic example — binary_c-python documentation</title>
<link rel="stylesheet" href="../../_static/pygments.css" type="text/css" />
<link rel="stylesheet" href="../../_static/css/theme.css" type="text/css" />
<!--[if lt IE 9]>
@@ -63,7 +63,7 @@
<div role="navigation" aria-label="Page navigation">
<ul class="wy-breadcrumbs">
<li><a href="../../index.html" class="icon icon-home"></a> »</li>
- <li><no title></li>
+ <li>Basic example</li>
<li class="wy-breadcrumbs-aside">
<a href="../../_sources/examples/old/basic_example.ipynb.txt" rel="nofollow"> View page source</a>
</li>
@@ -343,6 +343,9 @@ div.rendered_html tbody tr:hover {
text-align: unset;
}
</style>
+<section id="Basic-example">
+<h1>Basic example<a class="headerlink" href="#Basic-example" title="Permalink to this headline">ïƒ</a></h1>
+<p>Running a single system</p>
<div class="nbinput nblast docutils container">
<div class="prompt highlight-none notranslate"><div class="highlight"><pre><span></span>[1]:
</pre></div>
@@ -395,7 +398,7 @@ div.rendered_html tbody tr:hover {
<div class="prompt empty docutils container">
</div>
<div class="output_area docutils container">
-<img alt="../../_images/examples_old_basic_example_1_1.png" src="../../_images/examples_old_basic_example_1_1.png" />
+<img alt="../../_images/examples_old_basic_example_2_1.png" src="../../_images/examples_old_basic_example_2_1.png" />
</div>
</div>
<div class="nbinput docutils container">
@@ -420,7 +423,7 @@ div.rendered_html tbody tr:hover {
<div class="prompt empty docutils container">
</div>
<div class="output_area docutils container">
-<img alt="../../_images/examples_old_basic_example_2_1.png" src="../../_images/examples_old_basic_example_2_1.png" />
+<img alt="../../_images/examples_old_basic_example_3_1.png" src="../../_images/examples_old_basic_example_3_1.png" />
</div>
</div>
<div class="nbinput nblast docutils container">
@@ -432,6 +435,7 @@ div.rendered_html tbody tr:hover {
</pre></div>
</div>
</div>
+</section>
</div>
@@ -449,9 +453,9 @@ div.rendered_html tbody tr:hover {
provided by <a href="https://readthedocs.org">Read the Docs</a>.
<br><br>
-Generated on binarycpython git branch: development_0.9.3/2.2.1 git revision 8f3ed88f14c91d76a1fccf71294de4f0e9a160fd url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c-python/-/tree/development_0.9.3/2.2.1">git url</a>.
+Generated on binarycpython git branch: development_0.9.3/2.2.1 git revision 6c50cae388f9d9326bbb687ca0ecdc2df766f7f5 url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c-python/-/tree/development_0.9.3/2.2.1">git url</a>.
<br><br>
-Using binary_c with bit branch branch_david: git revision: "5834:20211216:a3146490e" url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c/-/tree/branch_david">git url</a>.
+Using binary_c with bit branch branch_david: git revision: "5845:20220107:201620bd7" url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c/-/tree/branch_david">git url</a>.
diff --git a/docs/build/html/examples/old/basic_example.ipynb b/docs/build/html/examples/old/basic_example.ipynb
index 9078cfcb5..7146b9767 100644
--- a/docs/build/html/examples/old/basic_example.ipynb
+++ b/docs/build/html/examples/old/basic_example.ipynb
@@ -1,5 +1,14 @@
{
"cells": [
+ {
+ "cell_type": "markdown",
+ "id": "c09b9f85-5250-4fd2-8142-bb8097d138b5",
+ "metadata": {},
+ "source": [
+ "# Basic example\n",
+ "Running a single system"
+ ]
+ },
{
"cell_type": "code",
"execution_count": 1,
@@ -106,7 +115,7 @@
],
"metadata": {
"kernelspec": {
- "display_name": "Python 3",
+ "display_name": "Python 3 (ipykernel)",
"language": "python",
"name": "python3"
},
@@ -120,7 +129,7 @@
"name": "python",
"nbconvert_exporter": "python",
"pygments_lexer": "ipython3",
- "version": "3.6.4"
+ "version": "3.9.9"
}
},
"nbformat": 4,
diff --git a/docs/build/html/examples/old/workshop_example_notebook.html b/docs/build/html/examples/old/workshop_example_notebook.html
index 000800a8d..8bf459335 100644
--- a/docs/build/html/examples/old/workshop_example_notebook.html
+++ b/docs/build/html/examples/old/workshop_example_notebook.html
@@ -892,9 +892,9 @@ Took 14.214274644851685s
provided by <a href="https://readthedocs.org">Read the Docs</a>.
<br><br>
-Generated on binarycpython git branch: development_0.9.3/2.2.1 git revision 8f3ed88f14c91d76a1fccf71294de4f0e9a160fd url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c-python/-/tree/development_0.9.3/2.2.1">git url</a>.
+Generated on binarycpython git branch: development_0.9.3/2.2.1 git revision 6c50cae388f9d9326bbb687ca0ecdc2df766f7f5 url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c-python/-/tree/development_0.9.3/2.2.1">git url</a>.
<br><br>
-Using binary_c with bit branch branch_david: git revision: "5834:20211216:a3146490e" url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c/-/tree/branch_david">git url</a>.
+Using binary_c with bit branch branch_david: git revision: "5845:20220107:201620bd7" url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c/-/tree/branch_david">git url</a>.
diff --git a/docs/build/html/examples/old/workshop_example_notebook.ipynb b/docs/build/html/examples/old/workshop_example_notebook.ipynb
index 4eca58797..78d0860ad 100644
--- a/docs/build/html/examples/old/workshop_example_notebook.ipynb
+++ b/docs/build/html/examples/old/workshop_example_notebook.ipynb
@@ -619,7 +619,7 @@
],
"metadata": {
"kernelspec": {
- "display_name": "Python 3",
+ "display_name": "Python 3 (ipykernel)",
"language": "python",
"name": "python3"
},
@@ -633,7 +633,7 @@
"name": "python",
"nbconvert_exporter": "python",
"pygments_lexer": "ipython3",
- "version": "3.6.4"
+ "version": "3.9.9"
}
},
"nbformat": 4,
diff --git a/docs/build/html/functions.html b/docs/build/html/functions.html
index 8323298fb..c474e20e9 100644
--- a/docs/build/html/functions.html
+++ b/docs/build/html/functions.html
@@ -19,7 +19,7 @@
<script src="_static/js/theme.js"></script>
<link rel="index" title="Index" href="genindex.html" />
<link rel="search" title="Search" href="search.html" />
- <link rel="next" title="Population_class module" href="grid.html" />
+ <link rel="next" title="Population class module" href="grid.html" />
<link rel="prev" title="ensemble module" href="ensemble.html" />
</head>
@@ -46,7 +46,7 @@
<li class="toctree-l2"><a class="reference internal" href="dicts.html">dicts module</a></li>
<li class="toctree-l2"><a class="reference internal" href="ensemble.html">ensemble module</a></li>
<li class="toctree-l2 current"><a class="current reference internal" href="#">functions module</a></li>
-<li class="toctree-l2"><a class="reference internal" href="grid.html">Population_class module</a></li>
+<li class="toctree-l2"><a class="reference internal" href="grid.html">Population class module</a></li>
<li class="toctree-l2"><a class="reference internal" href="plot_functions.html">plot_functions module</a></li>
<li class="toctree-l2"><a class="reference internal" href="population_extensions/analytics.html">Population class extension: analytics module</a></li>
<li class="toctree-l2"><a class="reference internal" href="population_extensions/cache.html">Population class extension: cache module</a></li>
@@ -54,9 +54,11 @@
<li class="toctree-l2"><a class="reference internal" href="population_extensions/dataIO.html">Population class extension: dataIO module</a></li>
<li class="toctree-l2"><a class="reference internal" href="population_extensions/distribution_functions.html">Population class extension: distribution_functions module</a></li>
<li class="toctree-l2"><a class="reference internal" href="population_extensions/gridcode.html">Population class extension: gridcode module</a></li>
+<li class="toctree-l2"><a class="reference internal" href="population_extensions/grid_logging.html">Population class extension: grid_logging module</a></li>
<li class="toctree-l2"><a class="reference internal" href="population_extensions/grid_options_defaults.html">Population class extension: grid_options_defaults module</a></li>
<li class="toctree-l2"><a class="reference internal" href="population_extensions/HPC.html">Population class extension: HPC module</a></li>
<li class="toctree-l2"><a class="reference internal" href="population_extensions/metadata.html">Population class extension: metadata module</a></li>
+<li class="toctree-l2"><a class="reference internal" href="population_extensions/Moe_di_Stefano_2017.html">Population class extension: Moe_di_Stefano_2017 module</a></li>
<li class="toctree-l2"><a class="reference internal" href="population_extensions/slurm.html">Population class extension: slurm module</a></li>
<li class="toctree-l2"><a class="reference internal" href="population_extensions/spacing_functions.html">Population class extension: spacing_functions module</a></li>
<li class="toctree-l2"><a class="reference internal" href="population_extensions/version_info.html">Population class extension: version_info module</a></li>
@@ -154,26 +156,33 @@ useful functions for the user</p>
<dl class="py function">
<dt class="sig sig-object py" id="binarycpython.utils.functions.bin_data">
<span class="sig-prename descclassname"><span class="pre">binarycpython.utils.functions.</span></span><span class="sig-name descname"><span class="pre">bin_data</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">value</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">binwidth</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="_modules/binarycpython/utils/functions.html#bin_data"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#binarycpython.utils.functions.bin_data" title="Permalink to this definition">ïƒ</a></dt>
-<dd><p>Function that bins the data</p>
-<p>Uses the absolute value of binwidth</p>
+<dd><p>Function that bins the data using the absolute value of binwidth using the following formula:</p>
+<div class="highlight-default notranslate"><div class="highlight"><pre><span></span><span class="p">((</span><span class="mf">0.5</span> <span class="k">if</span> <span class="n">value</span> <span class="o">></span> <span class="mf">0.0</span> <span class="k">else</span> <span class="o">-</span><span class="mf">0.5</span><span class="p">)</span> <span class="o">+</span> <span class="nb">int</span><span class="p">(</span><span class="n">value</span> <span class="o">/</span> <span class="nb">abs</span><span class="p">(</span><span class="n">binwidth</span><span class="p">)))</span> <span class="o">*</span> <span class="nb">abs</span><span class="p">(</span><span class="n">binwidth</span><span class="p">)</span>
+</pre></div>
+</div>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters</dt>
+<dd class="field-odd"><ul class="simple">
+<li><p><strong>value</strong> – value that we want to bin</p></li>
+<li><p><strong>binwidth</strong> – width of the binning</p></li>
+</ul>
+</dd>
+<dt class="field-even">Returns</dt>
+<dd class="field-even"><p>binned value</p>
+</dd>
+</dl>
</dd></dl>
<dl class="py function">
<dt class="sig sig-object py" id="binarycpython.utils.functions.call_binary_c_config">
<span class="sig-prename descclassname"><span class="pre">binarycpython.utils.functions.</span></span><span class="sig-name descname"><span class="pre">call_binary_c_config</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">argument</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="_modules/binarycpython/utils/functions.html#call_binary_c_config"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#binarycpython.utils.functions.call_binary_c_config" title="Permalink to this definition">ïƒ</a></dt>
<dd><p>Function to interface with the binary_c config file</p>
-<dl class="simple">
-<dt>input:</dt><dd><ul class="simple">
-<li><p>argument: argument for the binary_c config</p></li>
-</ul>
-</dd>
-</dl>
<dl class="field-list simple">
-<dt class="field-odd">Returns</dt>
-<dd class="field-odd"><p><ul class="simple">
-<li><p>raw output of binary_c-config</p></li>
-</ul>
-</p>
+<dt class="field-odd">Parameters</dt>
+<dd class="field-odd"><p><strong>argument</strong> – argument for the binary_c config</p>
+</dd>
+<dt class="field-even">Returns</dt>
+<dd class="field-even"><p>raw output of binary_c-config</p>
</dd>
</dl>
</dd></dl>
@@ -271,10 +280,19 @@ This string is missing the ‘binary_c ‘ at the start.</p>
<dl class="py function">
<dt class="sig sig-object py" id="binarycpython.utils.functions.datalinedict">
<span class="sig-prename descclassname"><span class="pre">binarycpython.utils.functions.</span></span><span class="sig-name descname"><span class="pre">datalinedict</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">line</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">parameters</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="_modules/binarycpython/utils/functions.html#datalinedict"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#binarycpython.utils.functions.datalinedict" title="Permalink to this definition">ïƒ</a></dt>
-<dd><p>Convert a line of data to a more convenient dictionary.
-:param line = a line of data as a string:
-:param parameters = a list of the parameter names:</p>
-<p>Note: if the parameter is a floating point number, it will be converted to Python’s float type.</p>
+<dd><p>Convert a line of data to a more convenient dictionary.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters</dt>
+<dd class="field-odd"><ul class="simple">
+<li><p><strong>string</strong> (<em>line = a line of data as a</em>) – </p></li>
+<li><p><strong>names</strong> (<em>parameters = a list of the parameter</em>) – </p></li>
+</ul>
+</dd>
+</dl>
+<div class="admonition note">
+<p class="admonition-title">Note</p>
+<p>If the parameter is a floating point number, it will be converted to Python’s float type.</p>
+</div>
</dd></dl>
<dl class="py function">
@@ -382,7 +400,7 @@ we call get_defaults())</p>
<span class="sig-prename descclassname"><span class="pre">binarycpython.utils.functions.</span></span><span class="sig-name descname"><span class="pre">get_help</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">param_name</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">''</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">print_help</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">True</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">fail_silently</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="_modules/binarycpython/utils/functions.html#get_help"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#binarycpython.utils.functions.get_help" title="Permalink to this definition">ïƒ</a></dt>
<dd><p>Function that returns the help info for a given parameter, by interfacing with binary_c</p>
<p>Will check whether it is a valid parameter.</p>
-<p>Binary_c will output things in the following order;
+<p>Binary_c will output things in the following order:
- Did you mean?
- binary_c help for variable
- default
@@ -402,8 +420,8 @@ valid parameter name</p></li>
<dd class="field-even"><p><code class="xref py py-data docutils literal notranslate"><span class="pre">Optional</span></code>[<code class="xref py py-class docutils literal notranslate"><span class="pre">dict</span></code>]</p>
</dd>
<dt class="field-odd">Returns</dt>
-<dd class="field-odd"><p>Dictionary containing the help info. This dictionary contains ‘parameter_name’,
-‘parameter_value_input_type’, ‘description’, optionally ‘macros’</p>
+<dd class="field-odd"><p>Dictionary containing the help info. This dictionary contains <cite>parameter_name</cite>,
+<cite>parameter_value_input_type</cite>, <cite>description</cite>, optionally <cite>macros</cite></p>
</dd>
</dl>
</dd></dl>
@@ -474,13 +492,23 @@ the help function to get as much information as possible.</p>
<dl class="py function">
<dt class="sig sig-object py" id="binarycpython.utils.functions.isfloat">
<span class="sig-prename descclassname"><span class="pre">binarycpython.utils.functions.</span></span><span class="sig-name descname"><span class="pre">isfloat</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">x</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="_modules/binarycpython/utils/functions.html#isfloat"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#binarycpython.utils.functions.isfloat" title="Permalink to this definition">ïƒ</a></dt>
-<dd><p>Return True if the “number†x, which could be a string, is a float, otherwise return False.</p>
+<dd><p>Function to return <cite>True</cite> if the “number†x, which could be a string, is an float, otherwise return <cite>False</cite>.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters</dt>
+<dd class="field-odd"><p><strong>x</strong> (<code class="xref py py-data docutils literal notranslate"><span class="pre">Union</span></code>[<code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code>, <code class="xref py py-class docutils literal notranslate"><span class="pre">float</span></code>, <code class="xref py py-class docutils literal notranslate"><span class="pre">int</span></code>]) – string float or int that we will attempt to convert to an <cite>float</cite> value.</p>
+</dd>
+</dl>
</dd></dl>
<dl class="py function">
<dt class="sig sig-object py" id="binarycpython.utils.functions.isint">
<span class="sig-prename descclassname"><span class="pre">binarycpython.utils.functions.</span></span><span class="sig-name descname"><span class="pre">isint</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">x</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="_modules/binarycpython/utils/functions.html#isint"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#binarycpython.utils.functions.isint" title="Permalink to this definition">ïƒ</a></dt>
-<dd><p>Return True if the “number†x, which could be a string, is an int, otherwise return False.</p>
+<dd><p>Function to return <cite>True</cite> if the “number†x, which could be a string, is an int, otherwise return <cite>False</cite>.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters</dt>
+<dd class="field-odd"><p><strong>x</strong> (<code class="xref py py-data docutils literal notranslate"><span class="pre">Union</span></code>[<code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code>, <code class="xref py py-class docutils literal notranslate"><span class="pre">float</span></code>, <code class="xref py py-class docutils literal notranslate"><span class="pre">int</span></code>]) – string float or int that we will attempt to convert to an <cite>int</cite> value.</p>
+</dd>
+</dl>
</dd></dl>
<dl class="py function">
@@ -524,20 +552,19 @@ the help function to get as much information as possible.</p>
<dl class="py function">
<dt class="sig sig-object py" id="binarycpython.utils.functions.mem_use">
<span class="sig-prename descclassname"><span class="pre">binarycpython.utils.functions.</span></span><span class="sig-name descname"><span class="pre">mem_use</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="_modules/binarycpython/utils/functions.html#mem_use"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#binarycpython.utils.functions.mem_use" title="Permalink to this definition">ïƒ</a></dt>
-<dd><p>Return current process memory use in MB. (Takes no arguments) Note: this is per-thread only.</p>
+<dd><p>Return current process memory use in MB. (Takes no arguments)</p>
+<p>Note: this is per-thread only.</p>
</dd></dl>
<dl class="py function">
<dt class="sig sig-object py" id="binarycpython.utils.functions.now">
-<span class="sig-prename descclassname"><span class="pre">binarycpython.utils.functions.</span></span><span class="sig-name descname"><span class="pre">now</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">now_object</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">style</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">specifier</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="_modules/binarycpython/utils/functions.html#now"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#binarycpython.utils.functions.now" title="Permalink to this definition">ïƒ</a></dt>
-<dd><p>convenience function to return a string of the current time,
-using the format “%m/%d/%Y %H:%M:%Sâ€</p>
+<span class="sig-prename descclassname"><span class="pre">binarycpython.utils.functions.</span></span><span class="sig-name descname"><span class="pre">now</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">now_object</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">style</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">custom_format</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="_modules/binarycpython/utils/functions.html#now"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#binarycpython.utils.functions.now" title="Permalink to this definition">ïƒ</a></dt>
+<dd><p>convenience function to return a string of the current time, using the format <code class="docutils literal notranslate"><span class="pre">%m/%d/%Y</span> <span class="pre">%H:%M:%S</span></code></p>
<dl class="field-list simple">
<dt class="field-odd">Parameters</dt>
<dd class="field-odd"><ul class="simple">
-<li><p><strong>style</strong> – if “nospace†then return the date/time with the format</p></li>
-<li><p><strong>"%Y%m%d_%H%M%S"</strong> – </p></li>
-<li><p><strong>specifier</strong> – if set, uses this as a specifier rather than whatever is set by default or in the style variable</p></li>
+<li><p><strong>style</strong> – if “nospace†then return the date/time with the format <code class="docutils literal notranslate"><span class="pre">%Y%m%d_%H%M%S</span></code>, else use format <code class="docutils literal notranslate"><span class="pre">%m/%d/%Y</span> <span class="pre">%H:%M:%S</span></code></p></li>
+<li><p><strong>custom_format</strong> – if set, uses this as a format rather than whatever is set by default or in the style variable</p></li>
</ul>
</dd>
</dl>
@@ -564,6 +591,14 @@ using the format “%m/%d/%Y %H:%M:%Sâ€</p>
<dt class="sig sig-object py" id="binarycpython.utils.functions.pad_output_distribution">
<span class="sig-prename descclassname"><span class="pre">binarycpython.utils.functions.</span></span><span class="sig-name descname"><span class="pre">pad_output_distribution</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">dist</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">binwidth</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="_modules/binarycpython/utils/functions.html#pad_output_distribution"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#binarycpython.utils.functions.pad_output_distribution" title="Permalink to this definition">ïƒ</a></dt>
<dd><p>Given a distribution, dist (a dictionary), which should be binned every binwidth (float), fill the distribution with zeros when there is no data. Note: this changes the data in place.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters</dt>
+<dd class="field-odd"><ul class="simple">
+<li><p><strong>dist</strong> (<code class="xref py py-class docutils literal notranslate"><span class="pre">dict</span></code>) – dictionary containing the distribution data.</p></li>
+<li><p><strong>binwidth</strong> (<code class="xref py py-class docutils literal notranslate"><span class="pre">float</span></code>) – binwidth that is used to fill the distribution with 0 in places where there is no value/key.</p></li>
+</ul>
+</dd>
+</dl>
</dd></dl>
<dl class="py function">
@@ -588,12 +623,12 @@ using the format “%m/%d/%Y %H:%M:%Sâ€</p>
<dl class="py function">
<dt class="sig sig-object py" id="binarycpython.utils.functions.temp_dir">
-<span class="sig-prename descclassname"><span class="pre">binarycpython.utils.functions.</span></span><span class="sig-name descname"><span class="pre">temp_dir</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="o"><span class="pre">*</span></span><span class="n"><span class="pre">args</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="_modules/binarycpython/utils/functions.html#temp_dir"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#binarycpython.utils.functions.temp_dir" title="Permalink to this definition">ïƒ</a></dt>
-<dd><p>Function to create directory within the TMP directory of the file system</p>
+<span class="sig-prename descclassname"><span class="pre">binarycpython.utils.functions.</span></span><span class="sig-name descname"><span class="pre">temp_dir</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="o"><span class="pre">*</span></span><span class="n"><span class="pre">child_dirs</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="_modules/binarycpython/utils/functions.html#temp_dir"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#binarycpython.utils.functions.temp_dir" title="Permalink to this definition">ïƒ</a></dt>
+<dd><p>Function to create directory within the TMP directory of the file system, starting with <cite>/<TMP>/binary_c_python-<username></cite></p>
<p>Makes use of os.makedirs exist_ok which requires python 3.2+</p>
<dl class="field-list simple">
<dt class="field-odd">Parameters</dt>
-<dd class="field-odd"><p><strong>arguments</strong> (<em>function</em>) – str input where each next input will be a child of the previous full_path. e.g. temp_dir(‘tests’, ‘grid’) will become ‘/tmp/binary_c_python/tests/grid’</p>
+<dd class="field-odd"><p><strong>*child_dirs</strong> – str input where each next input will be a child of the previous full_path. e.g. <code class="docutils literal notranslate"><span class="pre">temp_dir('tests',</span> <span class="pre">'grid')</span></code> will become <code class="docutils literal notranslate"><span class="pre">'/tmp/binary_c_python-<username>/tests/grid'</span></code></p>
</dd>
<dt class="field-even">Return type</dt>
<dd class="field-even"><p><code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code></p>
@@ -614,29 +649,35 @@ human-readable output.</p>
<dl class="py function">
<dt class="sig sig-object py" id="binarycpython.utils.functions.trem">
<span class="sig-prename descclassname"><span class="pre">binarycpython.utils.functions.</span></span><span class="sig-name descname"><span class="pre">trem</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">dt</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">count</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">dn</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">n</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="_modules/binarycpython/utils/functions.html#trem"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#binarycpython.utils.functions.trem" title="Permalink to this definition">ïƒ</a></dt>
-<dd><p>Estimate time remaining (seconds) given a differential time and count (i.e. progress = $count/$n). $dt is the time since the last call, $count is the current progress count, $dn is the number run since the last call, and $n is the total number required.</p>
+<dd><p>Estimate time remaining (seconds) given a differential time and count (i.e. <code class="docutils literal notranslate"><span class="pre">progress</span> <span class="pre">=</span> <span class="pre">count/n</span></code>).</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters</dt>
+<dd class="field-odd"><ul class="simple">
+<li><p><strong>dt</strong> – is the time since the last call.</p></li>
+<li><p><strong>count</strong> – is the current progress count.</p></li>
+<li><p><strong>dn</strong> – is the number run since the last call.</p></li>
+<li><p><strong>n</strong> – is the total number required.</p></li>
+</ul>
+</dd>
+</dl>
</dd></dl>
<dl class="py function">
<dt class="sig sig-object py" id="binarycpython.utils.functions.verbose_print">
<span class="sig-prename descclassname"><span class="pre">binarycpython.utils.functions.</span></span><span class="sig-name descname"><span class="pre">verbose_print</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">message</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">verbosity</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">minimal_verbosity</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">newline</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">'\\n'</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="_modules/binarycpython/utils/functions.html#verbose_print"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#binarycpython.utils.functions.verbose_print" title="Permalink to this definition">ïƒ</a></dt>
-<dd><blockquote>
-<div><p>Function that decides whether to print a message based on the current verbosity
-and its minimum verbosity</p>
-<p>if verbosity is equal or higher than the minimum, then we print</p>
-<dl class="simple">
-<dt>Args:</dt><dd><p>message: message to print
-verbosity: current verbosity level
-minimal_verbosity: threshold verbosity above which to print
-newline: newline character (or set of characters), defaults to “</p>
-</dd>
-</dl>
-</div></blockquote>
-<p>†but â€
-†(carriage return) might be useful.</p>
+<dd><p>Function that decides whether to print a message based on the current verbosity
+and its minimum verbosity. If verbosity is equal or higher than the minimum, then we print.</p>
<dl class="field-list simple">
-<dt class="field-odd">Return type</dt>
-<dd class="field-odd"><p><code class="xref py py-obj docutils literal notranslate"><span class="pre">None</span></code></p>
+<dt class="field-odd">Parameters</dt>
+<dd class="field-odd"><ul class="simple">
+<li><p><strong>message</strong> (<code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code>) – message to print.</p></li>
+<li><p><strong>verbosity</strong> (<code class="xref py py-class docutils literal notranslate"><span class="pre">int</span></code>) – current verbosity level.</p></li>
+<li><p><strong>minimal_verbosity</strong> (<code class="xref py py-class docutils literal notranslate"><span class="pre">int</span></code>) – threshold verbosity above which to print.</p></li>
+<li><p><strong>newline</strong> (<code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code>) – newline character (or set of characters), defaults to <code class="docutils literal notranslate"><span class="pre">\n</span></code> but <code class="docutils literal notranslate"><span class="pre">\x0d</span></code> (carriage return) might be useful.</p></li>
+</ul>
+</dd>
+<dt class="field-even">Return type</dt>
+<dd class="field-even"><p><code class="xref py py-obj docutils literal notranslate"><span class="pre">None</span></code></p>
</dd>
</dl>
</dd></dl>
@@ -665,7 +706,7 @@ of all the binary_c parameters.</p>
</div>
<footer><div class="rst-footer-buttons" role="navigation" aria-label="Footer">
<a href="ensemble.html" class="btn btn-neutral float-left" title="ensemble module" accesskey="p" rel="prev"><span class="fa fa-arrow-circle-left" aria-hidden="true"></span> Previous</a>
- <a href="grid.html" class="btn btn-neutral float-right" title="Population_class module" accesskey="n" rel="next">Next <span class="fa fa-arrow-circle-right" aria-hidden="true"></span></a>
+ <a href="grid.html" class="btn btn-neutral float-right" title="Population class module" accesskey="n" rel="next">Next <span class="fa fa-arrow-circle-right" aria-hidden="true"></span></a>
</div>
<hr/>
@@ -679,9 +720,9 @@ of all the binary_c parameters.</p>
provided by <a href="https://readthedocs.org">Read the Docs</a>.
<br><br>
-Generated on binarycpython git branch: development_0.9.3/2.2.1 git revision 8f3ed88f14c91d76a1fccf71294de4f0e9a160fd url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c-python/-/tree/development_0.9.3/2.2.1">git url</a>.
+Generated on binarycpython git branch: development_0.9.3/2.2.1 git revision 6c50cae388f9d9326bbb687ca0ecdc2df766f7f5 url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c-python/-/tree/development_0.9.3/2.2.1">git url</a>.
<br><br>
-Using binary_c with bit branch branch_david: git revision: "5834:20211216:a3146490e" url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c/-/tree/branch_david">git url</a>.
+Using binary_c with bit branch branch_david: git revision: "5845:20220107:201620bd7" url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c/-/tree/branch_david">git url</a>.
diff --git a/docs/build/html/genindex.html b/docs/build/html/genindex.html
index 39f33c49b..51d368078 100644
--- a/docs/build/html/genindex.html
+++ b/docs/build/html/genindex.html
@@ -231,8 +231,6 @@
<li><a href="population_extensions/condor.html#module-binarycpython.utils.population_extensions.condor">module</a>
</li>
</ul></li>
- </ul></td>
- <td style="width: 33%; vertical-align: top;"><ul>
<li>
binarycpython.utils.population_extensions.dataIO
@@ -240,11 +238,20 @@
<li><a href="population_extensions/dataIO.html#module-binarycpython.utils.population_extensions.dataIO">module</a>
</li>
</ul></li>
+ </ul></td>
+ <td style="width: 33%; vertical-align: top;"><ul>
<li>
binarycpython.utils.population_extensions.distribution_functions
<ul>
<li><a href="population_extensions/distribution_functions.html#module-binarycpython.utils.population_extensions.distribution_functions">module</a>
+</li>
+ </ul></li>
+ <li>
+ binarycpython.utils.population_extensions.grid_logging
+
+ <ul>
+ <li><a href="population_extensions/grid_logging.html#module-binarycpython.utils.population_extensions.grid_logging">module</a>
</li>
</ul></li>
<li>
@@ -273,6 +280,13 @@
<ul>
<li><a href="population_extensions/metadata.html#module-binarycpython.utils.population_extensions.metadata">module</a>
+</li>
+ </ul></li>
+ <li>
+ binarycpython.utils.population_extensions.Moe_di_Stefano_2017
+
+ <ul>
+ <li><a href="population_extensions/Moe_di_Stefano_2017.html#module-binarycpython.utils.population_extensions.Moe_di_Stefano_2017">module</a>
</li>
</ul></li>
<li>
@@ -519,21 +533,29 @@
</li>
<li><a href="functions.html#binarycpython.utils.functions.get_help">get_help() (in module binarycpython.utils.functions)</a>
</li>
- </ul></td>
- <td style="width: 33%; vertical-align: top;"><ul>
<li><a href="functions.html#binarycpython.utils.functions.get_help_all">get_help_all() (in module binarycpython.utils.functions)</a>
</li>
<li><a href="functions.html#binarycpython.utils.functions.get_help_super">get_help_super() (in module binarycpython.utils.functions)</a>
</li>
+ </ul></td>
+ <td style="width: 33%; vertical-align: top;"><ul>
<li><a href="population_extensions/distribution_functions.html#binarycpython.utils.population_extensions.distribution_functions.distribution_functions.get_integration_constant_q">get_integration_constant_q() (binarycpython.utils.population_extensions.distribution_functions.distribution_functions method)</a>
</li>
<li><a href="population_extensions/distribution_functions.html#binarycpython.utils.population_extensions.distribution_functions.distribution_functions.get_max_multiplicity">get_max_multiplicity() (binarycpython.utils.population_extensions.distribution_functions.distribution_functions method)</a>
+</li>
+ <li><a href="population_extensions/Moe_di_Stefano_2017.html#binarycpython.utils.population_extensions.Moe_di_Stefano_2017.Moe_di_Stefano_2017.get_Moe_di_Stefano_2017_default_options">get_Moe_di_Stefano_2017_default_options() (binarycpython.utils.population_extensions.Moe_di_Stefano_2017.Moe_di_Stefano_2017 method)</a>
+</li>
+ <li><a href="population_extensions/Moe_di_Stefano_2017.html#binarycpython.utils.population_extensions.Moe_di_Stefano_2017.Moe_di_Stefano_2017.get_Moe_di_Stefano_2017_default_options_description">get_Moe_di_Stefano_2017_default_options_description() (binarycpython.utils.population_extensions.Moe_di_Stefano_2017.Moe_di_Stefano_2017 method)</a>
+</li>
+ <li><a href="population_extensions/Moe_di_Stefano_2017.html#binarycpython.utils.population_extensions.Moe_di_Stefano_2017.Moe_di_Stefano_2017.get_moe_di_stefano_dataset">get_moe_di_stefano_dataset() (binarycpython.utils.population_extensions.Moe_di_Stefano_2017.Moe_di_Stefano_2017 method)</a>
</li>
<li><a href="functions.html#binarycpython.utils.functions.get_size">get_size() (in module binarycpython.utils.functions)</a>
</li>
<li><a href="population_extensions/slurm.html#binarycpython.utils.population_extensions.slurm.slurm.get_slurm_status">get_slurm_status() (binarycpython.utils.population_extensions.slurm.slurm method)</a>
</li>
<li><a href="functions.html#binarycpython.utils.functions.get_username">get_username() (in module binarycpython.utils.functions)</a>
+</li>
+ <li><a href="population_extensions/grid_logging.html#binarycpython.utils.population_extensions.grid_logging.grid_logging">grid_logging (class in binarycpython.utils.population_extensions.grid_logging)</a>
</li>
<li><a href="population_extensions/grid_options_defaults.html#binarycpython.utils.population_extensions.grid_options_defaults.grid_options_defaults">grid_options_defaults (class in binarycpython.utils.population_extensions.grid_options_defaults)</a>
</li>
@@ -742,6 +764,8 @@
<li><a href="population_extensions/dataIO.html#module-binarycpython.utils.population_extensions.dataIO">binarycpython.utils.population_extensions.dataIO</a>
</li>
<li><a href="population_extensions/distribution_functions.html#module-binarycpython.utils.population_extensions.distribution_functions">binarycpython.utils.population_extensions.distribution_functions</a>
+</li>
+ <li><a href="population_extensions/grid_logging.html#module-binarycpython.utils.population_extensions.grid_logging">binarycpython.utils.population_extensions.grid_logging</a>
</li>
<li><a href="population_extensions/grid_options_defaults.html#module-binarycpython.utils.population_extensions.grid_options_defaults">binarycpython.utils.population_extensions.grid_options_defaults</a>
</li>
@@ -750,6 +774,8 @@
<li><a href="population_extensions/HPC.html#module-binarycpython.utils.population_extensions.HPC">binarycpython.utils.population_extensions.HPC</a>
</li>
<li><a href="population_extensions/metadata.html#module-binarycpython.utils.population_extensions.metadata">binarycpython.utils.population_extensions.metadata</a>
+</li>
+ <li><a href="population_extensions/Moe_di_Stefano_2017.html#module-binarycpython.utils.population_extensions.Moe_di_Stefano_2017">binarycpython.utils.population_extensions.Moe_di_Stefano_2017</a>
</li>
<li><a href="population_extensions/slurm.html#module-binarycpython.utils.population_extensions.slurm">binarycpython.utils.population_extensions.slurm</a>
</li>
@@ -766,6 +792,10 @@
</ul></li>
</ul></td>
<td style="width: 33%; vertical-align: top;"><ul>
+ <li><a href="population_extensions/Moe_di_Stefano_2017.html#binarycpython.utils.population_extensions.Moe_di_Stefano_2017.Moe_di_Stefano_2017">Moe_di_Stefano_2017 (class in binarycpython.utils.population_extensions.Moe_di_Stefano_2017)</a>
+</li>
+ <li><a href="population_extensions/Moe_di_Stefano_2017.html#binarycpython.utils.population_extensions.Moe_di_Stefano_2017.Moe_di_Stefano_2017.Moe_di_Stefano_2017">Moe_di_Stefano_2017() (binarycpython.utils.population_extensions.Moe_di_Stefano_2017.Moe_di_Stefano_2017 method)</a>
+</li>
<li><a href="population_extensions/distribution_functions.html#binarycpython.utils.population_extensions.distribution_functions.distribution_functions.Moe_di_Stefano_2017_multiplicity_fractions">Moe_di_Stefano_2017_multiplicity_fractions() (binarycpython.utils.population_extensions.distribution_functions.distribution_functions method)</a>
</li>
<li><a href="population_extensions/distribution_functions.html#binarycpython.utils.population_extensions.distribution_functions.distribution_functions.Moe_di_Stefano_2017_pdf">Moe_di_Stefano_2017_pdf() (binarycpython.utils.population_extensions.distribution_functions.distribution_functions method)</a>
@@ -905,6 +935,8 @@
<li><a href="grid.html#binarycpython.utils.grid.Population.set">set() (binarycpython.utils.grid.Population method)</a>
</li>
<li><a href="population_extensions/condor.html#binarycpython.utils.population_extensions.condor.condor.set_condor_status">set_condor_status() (binarycpython.utils.population_extensions.condor.condor method)</a>
+</li>
+ <li><a href="population_extensions/Moe_di_Stefano_2017.html#binarycpython.utils.population_extensions.Moe_di_Stefano_2017.Moe_di_Stefano_2017.set_moe_di_stefano_settings">set_moe_di_stefano_settings() (binarycpython.utils.population_extensions.Moe_di_Stefano_2017.Moe_di_Stefano_2017 method)</a>
</li>
<li><a href="dicts.html#binarycpython.utils.dicts.set_opts">set_opts() (in module binarycpython.utils.dicts)</a>
</li>
@@ -915,11 +947,11 @@
<li><a href="population_extensions/analytics.html#binarycpython.utils.population_extensions.analytics.analytics.set_time">set_time() (binarycpython.utils.population_extensions.analytics.analytics method)</a>
</li>
<li><a href="population_extensions/cache.html#binarycpython.utils.population_extensions.cache.cache.setup_function_cache">setup_function_cache() (binarycpython.utils.population_extensions.cache.cache method)</a>
-</li>
- <li><a href="population_extensions/slurm.html#binarycpython.utils.population_extensions.slurm.slurm">slurm (class in binarycpython.utils.population_extensions.slurm)</a>
</li>
</ul></td>
<td style="width: 33%; vertical-align: top;"><ul>
+ <li><a href="population_extensions/slurm.html#binarycpython.utils.population_extensions.slurm.slurm">slurm (class in binarycpython.utils.population_extensions.slurm)</a>
+</li>
<li><a href="population_extensions/slurm.html#binarycpython.utils.population_extensions.slurm.slurm.slurm_check_requirements">slurm_check_requirements() (binarycpython.utils.population_extensions.slurm.slurm method)</a>
</li>
<li><a href="population_extensions/slurm.html#binarycpython.utils.population_extensions.slurm.slurm.slurm_dirs">slurm_dirs() (binarycpython.utils.population_extensions.slurm.slurm method)</a>
@@ -980,10 +1012,18 @@
<h2 id="V">V</h2>
<table style="width: 100%" class="indextable genindextable"><tr>
<td style="width: 33%; vertical-align: top;"><ul>
- <li><a href="functions.html#binarycpython.utils.functions.verbose_print">verbose_print() (in module binarycpython.utils.functions)</a>
+ <li><a href="population_extensions/grid_logging.html#binarycpython.utils.population_extensions.grid_logging.grid_logging.vb1print">vb1print() (binarycpython.utils.population_extensions.grid_logging.grid_logging method)</a>
+</li>
+ <li><a href="population_extensions/grid_logging.html#binarycpython.utils.population_extensions.grid_logging.grid_logging.vb2print">vb2print() (binarycpython.utils.population_extensions.grid_logging.grid_logging method)</a>
</li>
</ul></td>
<td style="width: 33%; vertical-align: top;"><ul>
+ <li><a href="population_extensions/grid_logging.html#binarycpython.utils.population_extensions.grid_logging.grid_logging.verbose_print">verbose_print() (binarycpython.utils.population_extensions.grid_logging.grid_logging method)</a>
+
+ <ul>
+ <li><a href="functions.html#binarycpython.utils.functions.verbose_print">(in module binarycpython.utils.functions)</a>
+</li>
+ </ul></li>
<li><a href="population_extensions/version_info.html#binarycpython.utils.population_extensions.version_info.version_info">version_info (class in binarycpython.utils.population_extensions.version_info)</a>
</li>
</ul></td>
@@ -1034,9 +1074,9 @@
provided by <a href="https://readthedocs.org">Read the Docs</a>.
<br><br>
-Generated on binarycpython git branch: development_0.9.3/2.2.1 git revision 8f3ed88f14c91d76a1fccf71294de4f0e9a160fd url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c-python/-/tree/development_0.9.3/2.2.1">git url</a>.
+Generated on binarycpython git branch: development_0.9.3/2.2.1 git revision 6c50cae388f9d9326bbb687ca0ecdc2df766f7f5 url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c-python/-/tree/development_0.9.3/2.2.1">git url</a>.
<br><br>
-Using binary_c with bit branch branch_david: git revision: "5834:20211216:a3146490e" url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c/-/tree/branch_david">git url</a>.
+Using binary_c with bit branch branch_david: git revision: "5845:20220107:201620bd7" url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c/-/tree/branch_david">git url</a>.
diff --git a/docs/build/html/grid.html b/docs/build/html/grid.html
index ece651d2c..e71d96221 100644
--- a/docs/build/html/grid.html
+++ b/docs/build/html/grid.html
@@ -4,7 +4,7 @@
<meta charset="utf-8" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
<meta name="viewport" content="width=device-width, initial-scale=1.0" />
- <title>Population_class module — binary_c-python documentation</title>
+ <title>Population class module — binary_c-python documentation</title>
<link rel="stylesheet" href="_static/pygments.css" type="text/css" />
<link rel="stylesheet" href="_static/css/theme.css" type="text/css" />
<!--[if lt IE 9]>
@@ -46,7 +46,7 @@
<li class="toctree-l2"><a class="reference internal" href="dicts.html">dicts module</a></li>
<li class="toctree-l2"><a class="reference internal" href="ensemble.html">ensemble module</a></li>
<li class="toctree-l2"><a class="reference internal" href="functions.html">functions module</a></li>
-<li class="toctree-l2 current"><a class="current reference internal" href="#">Population_class module</a></li>
+<li class="toctree-l2 current"><a class="current reference internal" href="#">Population class module</a></li>
<li class="toctree-l2"><a class="reference internal" href="plot_functions.html">plot_functions module</a></li>
<li class="toctree-l2"><a class="reference internal" href="population_extensions/analytics.html">Population class extension: analytics module</a></li>
<li class="toctree-l2"><a class="reference internal" href="population_extensions/cache.html">Population class extension: cache module</a></li>
@@ -54,9 +54,11 @@
<li class="toctree-l2"><a class="reference internal" href="population_extensions/dataIO.html">Population class extension: dataIO module</a></li>
<li class="toctree-l2"><a class="reference internal" href="population_extensions/distribution_functions.html">Population class extension: distribution_functions module</a></li>
<li class="toctree-l2"><a class="reference internal" href="population_extensions/gridcode.html">Population class extension: gridcode module</a></li>
+<li class="toctree-l2"><a class="reference internal" href="population_extensions/grid_logging.html">Population class extension: grid_logging module</a></li>
<li class="toctree-l2"><a class="reference internal" href="population_extensions/grid_options_defaults.html">Population class extension: grid_options_defaults module</a></li>
<li class="toctree-l2"><a class="reference internal" href="population_extensions/HPC.html">Population class extension: HPC module</a></li>
<li class="toctree-l2"><a class="reference internal" href="population_extensions/metadata.html">Population class extension: metadata module</a></li>
+<li class="toctree-l2"><a class="reference internal" href="population_extensions/Moe_di_Stefano_2017.html">Population class extension: Moe_di_Stefano_2017 module</a></li>
<li class="toctree-l2"><a class="reference internal" href="population_extensions/slurm.html">Population class extension: slurm module</a></li>
<li class="toctree-l2"><a class="reference internal" href="population_extensions/spacing_functions.html">Population class extension: spacing_functions module</a></li>
<li class="toctree-l2"><a class="reference internal" href="population_extensions/version_info.html">Population class extension: version_info module</a></li>
@@ -87,7 +89,7 @@
<ul class="wy-breadcrumbs">
<li><a href="index.html" class="icon icon-home"></a> »</li>
<li><a href="modules.html">Binarycpython code</a> »</li>
- <li>Population_class module</li>
+ <li>Population class module</li>
<li class="wy-breadcrumbs-aside">
<a href="_sources/grid.rst.txt" rel="nofollow"> View page source</a>
</li>
@@ -122,7 +124,7 @@
}
</style>
<section id="module-binarycpython.utils.grid">
-<span id="population-class-module"></span><h1>Population_class module<a class="headerlink" href="#module-binarycpython.utils.grid" title="Permalink to this headline">ïƒ</a></h1>
+<span id="population-class-module"></span><h1>Population class module<a class="headerlink" href="#module-binarycpython.utils.grid" title="Permalink to this headline">ïƒ</a></h1>
<p>Module containing the Population grid class object.</p>
<p>Here all the functionality of a Population object is defined.</p>
<p>TODO: the save_snapshots and save_snapshot, are they actually distinct?</p>
@@ -147,7 +149,7 @@
<dl class="py class">
<dt class="sig sig-object py" id="binarycpython.utils.grid.Population">
<em class="property"><span class="pre">class</span><span class="w"> </span></em><span class="sig-prename descclassname"><span class="pre">binarycpython.utils.grid.</span></span><span class="sig-name descname"><span class="pre">Population</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="o"><span class="pre">**</span></span><span class="n"><span class="pre">kwargs</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="_modules/binarycpython/utils/grid.html#Population"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#binarycpython.utils.grid.Population" title="Permalink to this definition">ïƒ</a></dt>
-<dd><p>Bases: <a class="reference internal" href="population_extensions/analytics.html#binarycpython.utils.population_extensions.analytics.analytics" title="binarycpython.utils.population_extensions.analytics.analytics"><code class="xref py py-class docutils literal notranslate"><span class="pre">binarycpython.utils.population_extensions.analytics.analytics</span></code></a>, <a class="reference internal" href="population_extensions/cache.html#binarycpython.utils.population_extensions.cache.cache" title="binarycpython.utils.population_extensions.cache.cache"><code class="xref py py-class docutils literal notranslate"><span class="pre">binarycpython.utils.population_extensions.cache.cache</span></code></a>, <a class="reference internal" href="population_extensions/dataIO.html#binarycpython.utils.population_extensions.dataIO.dataIO" title="binarycpython.utils.population_extensions.dataIO.dataIO"><code class="xref py py-class docutils literal notranslate"><span class="pre">binarycpython.utils.population_extensions.dataIO.dataIO</span></code></a>, <a class="reference internal" href="population_extensions/distribution_functions.html#binarycpython.utils.population_extensions.distribution_functions.distribution_functions" title="binarycpython.utils.population_extensions.distribution_functions.distribution_functions"><code class="xref py py-class docutils literal notranslate"><span class="pre">binarycpython.utils.population_extensions.distribution_functions.distribution_functions</span></code></a>, <code class="xref py py-class docutils literal notranslate"><span class="pre">binarycpython.utils.population_extensions.grid_logging.grid_logging</span></code>, <a class="reference internal" href="population_extensions/grid_options_defaults.html#binarycpython.utils.population_extensions.grid_options_defaults.grid_options_defaults" title="binarycpython.utils.population_extensions.grid_options_defaults.grid_options_defaults"><code class="xref py py-class docutils literal notranslate"><span class="pre">binarycpython.utils.population_extensions.grid_options_defaults.grid_options_defaults</span></code></a>, <a class="reference internal" href="population_extensions/gridcode.html#binarycpython.utils.population_extensions.gridcode.gridcode" title="binarycpython.utils.population_extensions.gridcode.gridcode"><code class="xref py py-class docutils literal notranslate"><span class="pre">binarycpython.utils.population_extensions.gridcode.gridcode</span></code></a>, <a class="reference internal" href="population_extensions/HPC.html#binarycpython.utils.population_extensions.HPC.HPC" title="binarycpython.utils.population_extensions.HPC.HPC"><code class="xref py py-class docutils literal notranslate"><span class="pre">binarycpython.utils.population_extensions.HPC.HPC</span></code></a>, <a class="reference internal" href="population_extensions/metadata.html#binarycpython.utils.population_extensions.metadata.metadata" title="binarycpython.utils.population_extensions.metadata.metadata"><code class="xref py py-class docutils literal notranslate"><span class="pre">binarycpython.utils.population_extensions.metadata.metadata</span></code></a>, <code class="xref py py-class docutils literal notranslate"><span class="pre">binarycpython.utils.population_extensions.Moe_di_Stefano_2017.Moe_di_Stefano_2017</span></code>, <a class="reference internal" href="population_extensions/spacing_functions.html#binarycpython.utils.population_extensions.spacing_functions.spacing_functions" title="binarycpython.utils.population_extensions.spacing_functions.spacing_functions"><code class="xref py py-class docutils literal notranslate"><span class="pre">binarycpython.utils.population_extensions.spacing_functions.spacing_functions</span></code></a>, <a class="reference internal" href="population_extensions/version_info.html#binarycpython.utils.population_extensions.version_info.version_info" title="binarycpython.utils.population_extensions.version_info.version_info"><code class="xref py py-class docutils literal notranslate"><span class="pre">binarycpython.utils.population_extensions.version_info.version_info</span></code></a></p>
+<dd><p>Bases: <a class="reference internal" href="population_extensions/analytics.html#binarycpython.utils.population_extensions.analytics.analytics" title="binarycpython.utils.population_extensions.analytics.analytics"><code class="xref py py-class docutils literal notranslate"><span class="pre">binarycpython.utils.population_extensions.analytics.analytics</span></code></a>, <a class="reference internal" href="population_extensions/cache.html#binarycpython.utils.population_extensions.cache.cache" title="binarycpython.utils.population_extensions.cache.cache"><code class="xref py py-class docutils literal notranslate"><span class="pre">binarycpython.utils.population_extensions.cache.cache</span></code></a>, <a class="reference internal" href="population_extensions/dataIO.html#binarycpython.utils.population_extensions.dataIO.dataIO" title="binarycpython.utils.population_extensions.dataIO.dataIO"><code class="xref py py-class docutils literal notranslate"><span class="pre">binarycpython.utils.population_extensions.dataIO.dataIO</span></code></a>, <a class="reference internal" href="population_extensions/distribution_functions.html#binarycpython.utils.population_extensions.distribution_functions.distribution_functions" title="binarycpython.utils.population_extensions.distribution_functions.distribution_functions"><code class="xref py py-class docutils literal notranslate"><span class="pre">binarycpython.utils.population_extensions.distribution_functions.distribution_functions</span></code></a>, <a class="reference internal" href="population_extensions/grid_logging.html#binarycpython.utils.population_extensions.grid_logging.grid_logging" title="binarycpython.utils.population_extensions.grid_logging.grid_logging"><code class="xref py py-class docutils literal notranslate"><span class="pre">binarycpython.utils.population_extensions.grid_logging.grid_logging</span></code></a>, <a class="reference internal" href="population_extensions/grid_options_defaults.html#binarycpython.utils.population_extensions.grid_options_defaults.grid_options_defaults" title="binarycpython.utils.population_extensions.grid_options_defaults.grid_options_defaults"><code class="xref py py-class docutils literal notranslate"><span class="pre">binarycpython.utils.population_extensions.grid_options_defaults.grid_options_defaults</span></code></a>, <a class="reference internal" href="population_extensions/gridcode.html#binarycpython.utils.population_extensions.gridcode.gridcode" title="binarycpython.utils.population_extensions.gridcode.gridcode"><code class="xref py py-class docutils literal notranslate"><span class="pre">binarycpython.utils.population_extensions.gridcode.gridcode</span></code></a>, <a class="reference internal" href="population_extensions/HPC.html#binarycpython.utils.population_extensions.HPC.HPC" title="binarycpython.utils.population_extensions.HPC.HPC"><code class="xref py py-class docutils literal notranslate"><span class="pre">binarycpython.utils.population_extensions.HPC.HPC</span></code></a>, <a class="reference internal" href="population_extensions/metadata.html#binarycpython.utils.population_extensions.metadata.metadata" title="binarycpython.utils.population_extensions.metadata.metadata"><code class="xref py py-class docutils literal notranslate"><span class="pre">binarycpython.utils.population_extensions.metadata.metadata</span></code></a>, <a class="reference internal" href="population_extensions/Moe_di_Stefano_2017.html#binarycpython.utils.population_extensions.Moe_di_Stefano_2017.Moe_di_Stefano_2017" title="binarycpython.utils.population_extensions.Moe_di_Stefano_2017.Moe_di_Stefano_2017"><code class="xref py py-class docutils literal notranslate"><span class="pre">binarycpython.utils.population_extensions.Moe_di_Stefano_2017.Moe_di_Stefano_2017</span></code></a>, <a class="reference internal" href="population_extensions/spacing_functions.html#binarycpython.utils.population_extensions.spacing_functions.spacing_functions" title="binarycpython.utils.population_extensions.spacing_functions.spacing_functions"><code class="xref py py-class docutils literal notranslate"><span class="pre">binarycpython.utils.population_extensions.spacing_functions.spacing_functions</span></code></a>, <a class="reference internal" href="population_extensions/version_info.html#binarycpython.utils.population_extensions.version_info.version_info" title="binarycpython.utils.population_extensions.version_info.version_info"><code class="xref py py-class docutils literal notranslate"><span class="pre">binarycpython.utils.population_extensions.version_info.version_info</span></code></a></p>
<p>Population Object. Contains all the necessary functions to set up, run and process a
population of systems</p>
<dl class="py method">
@@ -374,9 +376,9 @@ in the self.grid_options</p>
provided by <a href="https://readthedocs.org">Read the Docs</a>.
<br><br>
-Generated on binarycpython git branch: development_0.9.3/2.2.1 git revision 8f3ed88f14c91d76a1fccf71294de4f0e9a160fd url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c-python/-/tree/development_0.9.3/2.2.1">git url</a>.
+Generated on binarycpython git branch: development_0.9.3/2.2.1 git revision 6c50cae388f9d9326bbb687ca0ecdc2df766f7f5 url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c-python/-/tree/development_0.9.3/2.2.1">git url</a>.
<br><br>
-Using binary_c with bit branch branch_david: git revision: "5834:20211216:a3146490e" url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c/-/tree/branch_david">git url</a>.
+Using binary_c with bit branch branch_david: git revision: "5845:20220107:201620bd7" url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c/-/tree/branch_david">git url</a>.
diff --git a/docs/build/html/grid_options_descriptions.html b/docs/build/html/grid_options_descriptions.html
index fe7b9a954..8d1329af8 100644
--- a/docs/build/html/grid_options_descriptions.html
+++ b/docs/build/html/grid_options_descriptions.html
@@ -643,9 +643,9 @@ q extrapolation (below 0.15) method
provided by <a href="https://readthedocs.org">Read the Docs</a>.
<br><br>
-Generated on binarycpython git branch: development_0.9.3/2.2.1 git revision 8f3ed88f14c91d76a1fccf71294de4f0e9a160fd url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c-python/-/tree/development_0.9.3/2.2.1">git url</a>.
+Generated on binarycpython git branch: development_0.9.3/2.2.1 git revision 6c50cae388f9d9326bbb687ca0ecdc2df766f7f5 url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c-python/-/tree/development_0.9.3/2.2.1">git url</a>.
<br><br>
-Using binary_c with bit branch branch_david: git revision: "5834:20211216:a3146490e" url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c/-/tree/branch_david">git url</a>.
+Using binary_c with bit branch branch_david: git revision: "5845:20220107:201620bd7" url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c/-/tree/branch_david">git url</a>.
diff --git a/docs/build/html/index.html b/docs/build/html/index.html
index c0836301a..1b4bce902 100644
--- a/docs/build/html/index.html
+++ b/docs/build/html/index.html
@@ -223,7 +223,7 @@
<li class="toctree-l2"><a class="reference internal" href="dicts.html">dicts module</a></li>
<li class="toctree-l2"><a class="reference internal" href="ensemble.html">ensemble module</a></li>
<li class="toctree-l2"><a class="reference internal" href="functions.html">functions module</a></li>
-<li class="toctree-l2"><a class="reference internal" href="grid.html">Population_class module</a></li>
+<li class="toctree-l2"><a class="reference internal" href="grid.html">Population class module</a></li>
<li class="toctree-l2"><a class="reference internal" href="plot_functions.html">plot_functions module</a></li>
<li class="toctree-l2"><a class="reference internal" href="population_extensions/analytics.html">Population class extension: analytics module</a></li>
<li class="toctree-l2"><a class="reference internal" href="population_extensions/cache.html">Population class extension: cache module</a></li>
@@ -231,9 +231,11 @@
<li class="toctree-l2"><a class="reference internal" href="population_extensions/dataIO.html">Population class extension: dataIO module</a></li>
<li class="toctree-l2"><a class="reference internal" href="population_extensions/distribution_functions.html">Population class extension: distribution_functions module</a></li>
<li class="toctree-l2"><a class="reference internal" href="population_extensions/gridcode.html">Population class extension: gridcode module</a></li>
+<li class="toctree-l2"><a class="reference internal" href="population_extensions/grid_logging.html">Population class extension: grid_logging module</a></li>
<li class="toctree-l2"><a class="reference internal" href="population_extensions/grid_options_defaults.html">Population class extension: grid_options_defaults module</a></li>
<li class="toctree-l2"><a class="reference internal" href="population_extensions/HPC.html">Population class extension: HPC module</a></li>
<li class="toctree-l2"><a class="reference internal" href="population_extensions/metadata.html">Population class extension: metadata module</a></li>
+<li class="toctree-l2"><a class="reference internal" href="population_extensions/Moe_di_Stefano_2017.html">Population class extension: Moe_di_Stefano_2017 module</a></li>
<li class="toctree-l2"><a class="reference internal" href="population_extensions/slurm.html">Population class extension: slurm module</a></li>
<li class="toctree-l2"><a class="reference internal" href="population_extensions/spacing_functions.html">Population class extension: spacing_functions module</a></li>
<li class="toctree-l2"><a class="reference internal" href="population_extensions/version_info.html">Population class extension: version_info module</a></li>
@@ -307,9 +309,9 @@
provided by <a href="https://readthedocs.org">Read the Docs</a>.
<br><br>
-Generated on binarycpython git branch: development_0.9.3/2.2.1 git revision 8f3ed88f14c91d76a1fccf71294de4f0e9a160fd url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c-python/-/tree/development_0.9.3/2.2.1">git url</a>.
+Generated on binarycpython git branch: development_0.9.3/2.2.1 git revision 6c50cae388f9d9326bbb687ca0ecdc2df766f7f5 url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c-python/-/tree/development_0.9.3/2.2.1">git url</a>.
<br><br>
-Using binary_c with bit branch branch_david: git revision: "5834:20211216:a3146490e" url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c/-/tree/branch_david">git url</a>.
+Using binary_c with bit branch branch_david: git revision: "5845:20220107:201620bd7" url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c/-/tree/branch_david">git url</a>.
diff --git a/docs/build/html/modules.html b/docs/build/html/modules.html
index cd9cd3154..b669cf64b 100644
--- a/docs/build/html/modules.html
+++ b/docs/build/html/modules.html
@@ -46,7 +46,7 @@
<li class="toctree-l2"><a class="reference internal" href="dicts.html">dicts module</a></li>
<li class="toctree-l2"><a class="reference internal" href="ensemble.html">ensemble module</a></li>
<li class="toctree-l2"><a class="reference internal" href="functions.html">functions module</a></li>
-<li class="toctree-l2"><a class="reference internal" href="grid.html">Population_class module</a></li>
+<li class="toctree-l2"><a class="reference internal" href="grid.html">Population class module</a></li>
<li class="toctree-l2"><a class="reference internal" href="plot_functions.html">plot_functions module</a></li>
<li class="toctree-l2"><a class="reference internal" href="population_extensions/analytics.html">Population class extension: analytics module</a></li>
<li class="toctree-l2"><a class="reference internal" href="population_extensions/cache.html">Population class extension: cache module</a></li>
@@ -54,9 +54,11 @@
<li class="toctree-l2"><a class="reference internal" href="population_extensions/dataIO.html">Population class extension: dataIO module</a></li>
<li class="toctree-l2"><a class="reference internal" href="population_extensions/distribution_functions.html">Population class extension: distribution_functions module</a></li>
<li class="toctree-l2"><a class="reference internal" href="population_extensions/gridcode.html">Population class extension: gridcode module</a></li>
+<li class="toctree-l2"><a class="reference internal" href="population_extensions/grid_logging.html">Population class extension: grid_logging module</a></li>
<li class="toctree-l2"><a class="reference internal" href="population_extensions/grid_options_defaults.html">Population class extension: grid_options_defaults module</a></li>
<li class="toctree-l2"><a class="reference internal" href="population_extensions/HPC.html">Population class extension: HPC module</a></li>
<li class="toctree-l2"><a class="reference internal" href="population_extensions/metadata.html">Population class extension: metadata module</a></li>
+<li class="toctree-l2"><a class="reference internal" href="population_extensions/Moe_di_Stefano_2017.html">Population class extension: Moe_di_Stefano_2017 module</a></li>
<li class="toctree-l2"><a class="reference internal" href="population_extensions/slurm.html">Population class extension: slurm module</a></li>
<li class="toctree-l2"><a class="reference internal" href="population_extensions/spacing_functions.html">Population class extension: spacing_functions module</a></li>
<li class="toctree-l2"><a class="reference internal" href="population_extensions/version_info.html">Population class extension: version_info module</a></li>
@@ -129,7 +131,7 @@
<li class="toctree-l1"><a class="reference internal" href="dicts.html">dicts module</a></li>
<li class="toctree-l1"><a class="reference internal" href="ensemble.html">ensemble module</a></li>
<li class="toctree-l1"><a class="reference internal" href="functions.html">functions module</a></li>
-<li class="toctree-l1"><a class="reference internal" href="grid.html">Population_class module</a></li>
+<li class="toctree-l1"><a class="reference internal" href="grid.html">Population class module</a></li>
<li class="toctree-l1"><a class="reference internal" href="plot_functions.html">plot_functions module</a></li>
<li class="toctree-l1"><a class="reference internal" href="population_extensions/analytics.html">Population class extension: analytics module</a></li>
<li class="toctree-l1"><a class="reference internal" href="population_extensions/cache.html">Population class extension: cache module</a></li>
@@ -137,9 +139,11 @@
<li class="toctree-l1"><a class="reference internal" href="population_extensions/dataIO.html">Population class extension: dataIO module</a></li>
<li class="toctree-l1"><a class="reference internal" href="population_extensions/distribution_functions.html">Population class extension: distribution_functions module</a></li>
<li class="toctree-l1"><a class="reference internal" href="population_extensions/gridcode.html">Population class extension: gridcode module</a></li>
+<li class="toctree-l1"><a class="reference internal" href="population_extensions/grid_logging.html">Population class extension: grid_logging module</a></li>
<li class="toctree-l1"><a class="reference internal" href="population_extensions/grid_options_defaults.html">Population class extension: grid_options_defaults module</a></li>
<li class="toctree-l1"><a class="reference internal" href="population_extensions/HPC.html">Population class extension: HPC module</a></li>
<li class="toctree-l1"><a class="reference internal" href="population_extensions/metadata.html">Population class extension: metadata module</a></li>
+<li class="toctree-l1"><a class="reference internal" href="population_extensions/Moe_di_Stefano_2017.html">Population class extension: Moe_di_Stefano_2017 module</a></li>
<li class="toctree-l1"><a class="reference internal" href="population_extensions/slurm.html">Population class extension: slurm module</a></li>
<li class="toctree-l1"><a class="reference internal" href="population_extensions/spacing_functions.html">Population class extension: spacing_functions module</a></li>
<li class="toctree-l1"><a class="reference internal" href="population_extensions/version_info.html">Population class extension: version_info module</a></li>
@@ -169,9 +173,9 @@
provided by <a href="https://readthedocs.org">Read the Docs</a>.
<br><br>
-Generated on binarycpython git branch: development_0.9.3/2.2.1 git revision 8f3ed88f14c91d76a1fccf71294de4f0e9a160fd url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c-python/-/tree/development_0.9.3/2.2.1">git url</a>.
+Generated on binarycpython git branch: development_0.9.3/2.2.1 git revision 6c50cae388f9d9326bbb687ca0ecdc2df766f7f5 url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c-python/-/tree/development_0.9.3/2.2.1">git url</a>.
<br><br>
-Using binary_c with bit branch branch_david: git revision: "5834:20211216:a3146490e" url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c/-/tree/branch_david">git url</a>.
+Using binary_c with bit branch branch_david: git revision: "5845:20220107:201620bd7" url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c/-/tree/branch_david">git url</a>.
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index 1d6c8648d..8fe41f1da 100644
--- a/docs/build/html/plot_functions.html
+++ b/docs/build/html/plot_functions.html
@@ -20,7 +20,7 @@
<link rel="index" title="Index" href="genindex.html" />
<link rel="search" title="Search" href="search.html" />
<link rel="next" title="Population class extension: analytics module" href="population_extensions/analytics.html" />
- <link rel="prev" title="Population_class module" href="grid.html" />
+ <link rel="prev" title="Population class module" href="grid.html" />
</head>
<body class="wy-body-for-nav">
@@ -46,7 +46,7 @@
<li class="toctree-l2"><a class="reference internal" href="dicts.html">dicts module</a></li>
<li class="toctree-l2"><a class="reference internal" href="ensemble.html">ensemble module</a></li>
<li class="toctree-l2"><a class="reference internal" href="functions.html">functions module</a></li>
-<li class="toctree-l2"><a class="reference internal" href="grid.html">Population_class module</a></li>
+<li class="toctree-l2"><a class="reference internal" href="grid.html">Population class module</a></li>
<li class="toctree-l2 current"><a class="current reference internal" href="#">plot_functions module</a></li>
<li class="toctree-l2"><a class="reference internal" href="population_extensions/analytics.html">Population class extension: analytics module</a></li>
<li class="toctree-l2"><a class="reference internal" href="population_extensions/cache.html">Population class extension: cache module</a></li>
@@ -54,9 +54,11 @@
<li class="toctree-l2"><a class="reference internal" href="population_extensions/dataIO.html">Population class extension: dataIO module</a></li>
<li class="toctree-l2"><a class="reference internal" href="population_extensions/distribution_functions.html">Population class extension: distribution_functions module</a></li>
<li class="toctree-l2"><a class="reference internal" href="population_extensions/gridcode.html">Population class extension: gridcode module</a></li>
+<li class="toctree-l2"><a class="reference internal" href="population_extensions/grid_logging.html">Population class extension: grid_logging module</a></li>
<li class="toctree-l2"><a class="reference internal" href="population_extensions/grid_options_defaults.html">Population class extension: grid_options_defaults module</a></li>
<li class="toctree-l2"><a class="reference internal" href="population_extensions/HPC.html">Population class extension: HPC module</a></li>
<li class="toctree-l2"><a class="reference internal" href="population_extensions/metadata.html">Population class extension: metadata module</a></li>
+<li class="toctree-l2"><a class="reference internal" href="population_extensions/Moe_di_Stefano_2017.html">Population class extension: Moe_di_Stefano_2017 module</a></li>
<li class="toctree-l2"><a class="reference internal" href="population_extensions/slurm.html">Population class extension: slurm module</a></li>
<li class="toctree-l2"><a class="reference internal" href="population_extensions/spacing_functions.html">Population class extension: spacing_functions module</a></li>
<li class="toctree-l2"><a class="reference internal" href="population_extensions/version_info.html">Population class extension: version_info module</a></li>
@@ -360,7 +362,7 @@ This is not included in all the plotting routines.</p></li>
</div>
</div>
<footer><div class="rst-footer-buttons" role="navigation" aria-label="Footer">
- <a href="grid.html" class="btn btn-neutral float-left" title="Population_class module" accesskey="p" rel="prev"><span class="fa fa-arrow-circle-left" aria-hidden="true"></span> Previous</a>
+ <a href="grid.html" class="btn btn-neutral float-left" title="Population class module" accesskey="p" rel="prev"><span class="fa fa-arrow-circle-left" aria-hidden="true"></span> Previous</a>
<a href="population_extensions/analytics.html" class="btn btn-neutral float-right" title="Population class extension: analytics module" accesskey="n" rel="next">Next <span class="fa fa-arrow-circle-right" aria-hidden="true"></span></a>
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@@ -375,9 +377,9 @@ This is not included in all the plotting routines.</p></li>
provided by <a href="https://readthedocs.org">Read the Docs</a>.
<br><br>
-Generated on binarycpython git branch: development_0.9.3/2.2.1 git revision 8f3ed88f14c91d76a1fccf71294de4f0e9a160fd url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c-python/-/tree/development_0.9.3/2.2.1">git url</a>.
+Generated on binarycpython git branch: development_0.9.3/2.2.1 git revision 6c50cae388f9d9326bbb687ca0ecdc2df766f7f5 url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c-python/-/tree/development_0.9.3/2.2.1">git url</a>.
<br><br>
-Using binary_c with bit branch branch_david: git revision: "5834:20211216:a3146490e" url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c/-/tree/branch_david">git url</a>.
+Using binary_c with bit branch branch_david: git revision: "5845:20220107:201620bd7" url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c/-/tree/branch_david">git url</a>.
diff --git a/docs/build/html/population_extensions/HPC.html b/docs/build/html/population_extensions/HPC.html
index 24a6e6ac3..4cb053932 100644
--- a/docs/build/html/population_extensions/HPC.html
+++ b/docs/build/html/population_extensions/HPC.html
@@ -46,7 +46,7 @@
<li class="toctree-l2"><a class="reference internal" href="../dicts.html">dicts module</a></li>
<li class="toctree-l2"><a class="reference internal" href="../ensemble.html">ensemble module</a></li>
<li class="toctree-l2"><a class="reference internal" href="../functions.html">functions module</a></li>
-<li class="toctree-l2"><a class="reference internal" href="../grid.html">Population_class module</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../grid.html">Population class module</a></li>
<li class="toctree-l2"><a class="reference internal" href="../plot_functions.html">plot_functions module</a></li>
<li class="toctree-l2"><a class="reference internal" href="analytics.html">Population class extension: analytics module</a></li>
<li class="toctree-l2"><a class="reference internal" href="cache.html">Population class extension: cache module</a></li>
@@ -54,9 +54,11 @@
<li class="toctree-l2"><a class="reference internal" href="dataIO.html">Population class extension: dataIO module</a></li>
<li class="toctree-l2"><a class="reference internal" href="distribution_functions.html">Population class extension: distribution_functions module</a></li>
<li class="toctree-l2"><a class="reference internal" href="gridcode.html">Population class extension: gridcode module</a></li>
+<li class="toctree-l2"><a class="reference internal" href="grid_logging.html">Population class extension: grid_logging module</a></li>
<li class="toctree-l2"><a class="reference internal" href="grid_options_defaults.html">Population class extension: grid_options_defaults module</a></li>
<li class="toctree-l2 current"><a class="current reference internal" href="#">Population class extension: HPC module</a></li>
<li class="toctree-l2"><a class="reference internal" href="metadata.html">Population class extension: metadata module</a></li>
+<li class="toctree-l2"><a class="reference internal" href="Moe_di_Stefano_2017.html">Population class extension: Moe_di_Stefano_2017 module</a></li>
<li class="toctree-l2"><a class="reference internal" href="slurm.html">Population class extension: slurm module</a></li>
<li class="toctree-l2"><a class="reference internal" href="spacing_functions.html">Population class extension: spacing_functions module</a></li>
<li class="toctree-l2"><a class="reference internal" href="version_info.html">Population class extension: version_info module</a></li>
@@ -370,9 +372,9 @@ and (if given) the string passed in.</p>
provided by <a href="https://readthedocs.org">Read the Docs</a>.
<br><br>
-Generated on binarycpython git branch: development_0.9.3/2.2.1 git revision 8f3ed88f14c91d76a1fccf71294de4f0e9a160fd url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c-python/-/tree/development_0.9.3/2.2.1">git url</a>.
+Generated on binarycpython git branch: development_0.9.3/2.2.1 git revision 6c50cae388f9d9326bbb687ca0ecdc2df766f7f5 url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c-python/-/tree/development_0.9.3/2.2.1">git url</a>.
<br><br>
-Using binary_c with bit branch branch_david: git revision: "5834:20211216:a3146490e" url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c/-/tree/branch_david">git url</a>.
+Using binary_c with bit branch branch_david: git revision: "5845:20220107:201620bd7" url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c/-/tree/branch_david">git url</a>.
diff --git a/docs/build/html/population_extensions/Moe_di_Stefano_2017.html b/docs/build/html/population_extensions/Moe_di_Stefano_2017.html
new file mode 100644
index 000000000..95c32a0dc
--- /dev/null
+++ b/docs/build/html/population_extensions/Moe_di_Stefano_2017.html
@@ -0,0 +1,213 @@
+<!DOCTYPE html>
+<html class="writer-html5" lang="en" >
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+<li class="toctree-l2"><a class="reference internal" href="../custom_logging_functions.html">custom_logging_functions module</a></li>
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+<li class="toctree-l2"><a class="reference internal" href="../ensemble.html">ensemble module</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../functions.html">functions module</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../grid.html">Population class module</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../plot_functions.html">plot_functions module</a></li>
+<li class="toctree-l2"><a class="reference internal" href="analytics.html">Population class extension: analytics module</a></li>
+<li class="toctree-l2"><a class="reference internal" href="cache.html">Population class extension: cache module</a></li>
+<li class="toctree-l2"><a class="reference internal" href="condor.html">Population class extension: condor module</a></li>
+<li class="toctree-l2"><a class="reference internal" href="dataIO.html">Population class extension: dataIO module</a></li>
+<li class="toctree-l2"><a class="reference internal" href="distribution_functions.html">Population class extension: distribution_functions module</a></li>
+<li class="toctree-l2"><a class="reference internal" href="gridcode.html">Population class extension: gridcode module</a></li>
+<li class="toctree-l2"><a class="reference internal" href="grid_logging.html">Population class extension: grid_logging module</a></li>
+<li class="toctree-l2"><a class="reference internal" href="grid_options_defaults.html">Population class extension: grid_options_defaults module</a></li>
+<li class="toctree-l2"><a class="reference internal" href="HPC.html">Population class extension: HPC module</a></li>
+<li class="toctree-l2"><a class="reference internal" href="metadata.html">Population class extension: metadata module</a></li>
+<li class="toctree-l2 current"><a class="current reference internal" href="#">Population class extension: Moe_di_Stefano_2017 module</a></li>
+<li class="toctree-l2"><a class="reference internal" href="slurm.html">Population class extension: slurm module</a></li>
+<li class="toctree-l2"><a class="reference internal" href="spacing_functions.html">Population class extension: spacing_functions module</a></li>
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+</style>
+<section id="module-binarycpython.utils.population_extensions.Moe_di_Stefano_2017">
+<span id="population-class-extension-moe-di-stefano-2017-module"></span><h1>Population class extension: Moe_di_Stefano_2017 module<a class="headerlink" href="#module-binarycpython.utils.population_extensions.Moe_di_Stefano_2017" title="Permalink to this headline">ïƒ</a></h1>
+<p>Module containing the functions to handle the Moe&Distrefano data</p>
+<p>This class object is an extension to the population grid object</p>
+<dl class="py class">
+<dt class="sig sig-object py" id="binarycpython.utils.population_extensions.Moe_di_Stefano_2017.Moe_di_Stefano_2017">
+<em class="property"><span class="pre">class</span><span class="w"> </span></em><span class="sig-prename descclassname"><span class="pre">binarycpython.utils.population_extensions.Moe_di_Stefano_2017.</span></span><span class="sig-name descname"><span class="pre">Moe_di_Stefano_2017</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="o"><span class="pre">**</span></span><span class="n"><span class="pre">kwargs</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/binarycpython/utils/population_extensions/Moe_di_Stefano_2017.html#Moe_di_Stefano_2017"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#binarycpython.utils.population_extensions.Moe_di_Stefano_2017.Moe_di_Stefano_2017" title="Permalink to this definition">ïƒ</a></dt>
+<dd><p>Bases: <code class="xref py py-class docutils literal notranslate"><span class="pre">object</span></code></p>
+<p>Extension to the population grid object that contains functionality to handle handle the Moe & distefano distributions</p>
+<dl class="py method">
+<dt class="sig sig-object py" id="binarycpython.utils.population_extensions.Moe_di_Stefano_2017.Moe_di_Stefano_2017.Moe_di_Stefano_2017">
+<span class="sig-name descname"><span class="pre">Moe_di_Stefano_2017</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">options</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/binarycpython/utils/population_extensions/Moe_di_Stefano_2017.html#Moe_di_Stefano_2017.Moe_di_Stefano_2017"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#binarycpython.utils.population_extensions.Moe_di_Stefano_2017.Moe_di_Stefano_2017.Moe_di_Stefano_2017" title="Permalink to this definition">ïƒ</a></dt>
+<dd><p>Function to handle setting the user input settings,
+set up the data and load that into interpolators and
+then set the distribution functions</p>
+<p>Takes a dictionary as its only argument</p>
+</dd></dl>
+
+<dl class="py method">
+<dt class="sig sig-object py" id="binarycpython.utils.population_extensions.Moe_di_Stefano_2017.Moe_di_Stefano_2017.get_Moe_di_Stefano_2017_default_options">
+<span class="sig-name descname"><span class="pre">get_Moe_di_Stefano_2017_default_options</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="../_modules/binarycpython/utils/population_extensions/Moe_di_Stefano_2017.html#Moe_di_Stefano_2017.get_Moe_di_Stefano_2017_default_options"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#binarycpython.utils.population_extensions.Moe_di_Stefano_2017.Moe_di_Stefano_2017.get_Moe_di_Stefano_2017_default_options" title="Permalink to this definition">ïƒ</a></dt>
+<dd><p>Function that returns the default options for the Moe & diStefano grid options</p>
+</dd></dl>
+
+<dl class="py method">
+<dt class="sig sig-object py" id="binarycpython.utils.population_extensions.Moe_di_Stefano_2017.Moe_di_Stefano_2017.get_Moe_di_Stefano_2017_default_options_description">
+<span class="sig-name descname"><span class="pre">get_Moe_di_Stefano_2017_default_options_description</span></span><span class="sig-paren">(</span><span class="sig-paren">)</span><a class="reference internal" href="../_modules/binarycpython/utils/population_extensions/Moe_di_Stefano_2017.html#Moe_di_Stefano_2017.get_Moe_di_Stefano_2017_default_options_description"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#binarycpython.utils.population_extensions.Moe_di_Stefano_2017.Moe_di_Stefano_2017.get_Moe_di_Stefano_2017_default_options_description" title="Permalink to this definition">ïƒ</a></dt>
+<dd><p>Function to return the descriptions for all the Moe & diStefano grid options</p>
+</dd></dl>
+
+<dl class="py method">
+<dt class="sig sig-object py" id="binarycpython.utils.population_extensions.Moe_di_Stefano_2017.Moe_di_Stefano_2017.get_moe_di_stefano_dataset">
+<span class="sig-name descname"><span class="pre">get_moe_di_stefano_dataset</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">options</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">verbosity</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">0</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/binarycpython/utils/population_extensions/Moe_di_Stefano_2017.html#Moe_di_Stefano_2017.get_moe_di_stefano_dataset"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#binarycpython.utils.population_extensions.Moe_di_Stefano_2017.Moe_di_Stefano_2017.get_moe_di_stefano_dataset" title="Permalink to this definition">ïƒ</a></dt>
+<dd><blockquote>
+<div><p>Function to get the default Moe and di Stefano dataset or accept a user input.</p>
+</div></blockquote>
+<p>Returns a dict containing the (JSON) data.</p>
+</dd></dl>
+
+<dl class="py method">
+<dt class="sig sig-object py" id="binarycpython.utils.population_extensions.Moe_di_Stefano_2017.Moe_di_Stefano_2017.set_moe_di_stefano_settings">
+<span class="sig-name descname"><span class="pre">set_moe_di_stefano_settings</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">options</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/binarycpython/utils/population_extensions/Moe_di_Stefano_2017.html#Moe_di_Stefano_2017.set_moe_di_stefano_settings"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#binarycpython.utils.population_extensions.Moe_di_Stefano_2017.Moe_di_Stefano_2017.set_moe_di_stefano_settings" title="Permalink to this definition">ïƒ</a></dt>
+<dd><p>Function to set user input configurations for the Moe & di Stefano methods</p>
+<p>If nothing is passed then we just use the default options</p>
+</dd></dl>
+
+</dd></dl>
+
+</section>
+
+
+ </div>
+ </div>
+ <footer><div class="rst-footer-buttons" role="navigation" aria-label="Footer">
+ <a href="metadata.html" class="btn btn-neutral float-left" title="Population class extension: metadata module" accesskey="p" rel="prev"><span class="fa fa-arrow-circle-left" aria-hidden="true"></span> Previous</a>
+ <a href="slurm.html" class="btn btn-neutral float-right" title="Population class extension: slurm module" accesskey="n" rel="next">Next <span class="fa fa-arrow-circle-right" aria-hidden="true"></span></a>
+ </div>
+
+ <hr/>
+
+ <div role="contentinfo">
+ <p>© Copyright 2021, David Hendriks, Robert Izzard.</p>
+ </div>
+
+ Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using a
+ <a href="https://github.com/readthedocs/sphinx_rtd_theme">theme</a>
+ provided by <a href="https://readthedocs.org">Read the Docs</a>.
+
+<br><br>
+Generated on binarycpython git branch: development_0.9.3/2.2.1 git revision 6c50cae388f9d9326bbb687ca0ecdc2df766f7f5 url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c-python/-/tree/development_0.9.3/2.2.1">git url</a>.
+<br><br>
+Using binary_c with bit branch branch_david: git revision: "5845:20220107:201620bd7" url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c/-/tree/branch_david">git url</a>.
+
+
+
+</footer>
+ </div>
+ </div>
+ </section>
+ </div>
+ <script>
+ jQuery(function () {
+ SphinxRtdTheme.Navigation.enable(true);
+ });
+ </script>
+
+</body>
+</html>
\ No newline at end of file
diff --git a/docs/build/html/population_extensions/analytics.html b/docs/build/html/population_extensions/analytics.html
index 4eee6410b..325518df2 100644
--- a/docs/build/html/population_extensions/analytics.html
+++ b/docs/build/html/population_extensions/analytics.html
@@ -46,7 +46,7 @@
<li class="toctree-l2"><a class="reference internal" href="../dicts.html">dicts module</a></li>
<li class="toctree-l2"><a class="reference internal" href="../ensemble.html">ensemble module</a></li>
<li class="toctree-l2"><a class="reference internal" href="../functions.html">functions module</a></li>
-<li class="toctree-l2"><a class="reference internal" href="../grid.html">Population_class module</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../grid.html">Population class module</a></li>
<li class="toctree-l2"><a class="reference internal" href="../plot_functions.html">plot_functions module</a></li>
<li class="toctree-l2 current"><a class="current reference internal" href="#">Population class extension: analytics module</a></li>
<li class="toctree-l2"><a class="reference internal" href="cache.html">Population class extension: cache module</a></li>
@@ -54,9 +54,11 @@
<li class="toctree-l2"><a class="reference internal" href="dataIO.html">Population class extension: dataIO module</a></li>
<li class="toctree-l2"><a class="reference internal" href="distribution_functions.html">Population class extension: distribution_functions module</a></li>
<li class="toctree-l2"><a class="reference internal" href="gridcode.html">Population class extension: gridcode module</a></li>
+<li class="toctree-l2"><a class="reference internal" href="grid_logging.html">Population class extension: grid_logging module</a></li>
<li class="toctree-l2"><a class="reference internal" href="grid_options_defaults.html">Population class extension: grid_options_defaults module</a></li>
<li class="toctree-l2"><a class="reference internal" href="HPC.html">Population class extension: HPC module</a></li>
<li class="toctree-l2"><a class="reference internal" href="metadata.html">Population class extension: metadata module</a></li>
+<li class="toctree-l2"><a class="reference internal" href="Moe_di_Stefano_2017.html">Population class extension: Moe_di_Stefano_2017 module</a></li>
<li class="toctree-l2"><a class="reference internal" href="slurm.html">Population class extension: slurm module</a></li>
<li class="toctree-l2"><a class="reference internal" href="spacing_functions.html">Population class extension: spacing_functions module</a></li>
<li class="toctree-l2"><a class="reference internal" href="version_info.html">Population class extension: version_info module</a></li>
@@ -179,9 +181,9 @@ the time elapsed if otherwise or if force is True</p>
provided by <a href="https://readthedocs.org">Read the Docs</a>.
<br><br>
-Generated on binarycpython git branch: development_0.9.3/2.2.1 git revision 8f3ed88f14c91d76a1fccf71294de4f0e9a160fd url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c-python/-/tree/development_0.9.3/2.2.1">git url</a>.
+Generated on binarycpython git branch: development_0.9.3/2.2.1 git revision 6c50cae388f9d9326bbb687ca0ecdc2df766f7f5 url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c-python/-/tree/development_0.9.3/2.2.1">git url</a>.
<br><br>
-Using binary_c with bit branch branch_david: git revision: "5834:20211216:a3146490e" url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c/-/tree/branch_david">git url</a>.
+Using binary_c with bit branch branch_david: git revision: "5845:20220107:201620bd7" url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c/-/tree/branch_david">git url</a>.
diff --git a/docs/build/html/population_extensions/cache.html b/docs/build/html/population_extensions/cache.html
index f4f8d2d4a..bfb34ca15 100644
--- a/docs/build/html/population_extensions/cache.html
+++ b/docs/build/html/population_extensions/cache.html
@@ -46,7 +46,7 @@
<li class="toctree-l2"><a class="reference internal" href="../dicts.html">dicts module</a></li>
<li class="toctree-l2"><a class="reference internal" href="../ensemble.html">ensemble module</a></li>
<li class="toctree-l2"><a class="reference internal" href="../functions.html">functions module</a></li>
-<li class="toctree-l2"><a class="reference internal" href="../grid.html">Population_class module</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../grid.html">Population class module</a></li>
<li class="toctree-l2"><a class="reference internal" href="../plot_functions.html">plot_functions module</a></li>
<li class="toctree-l2"><a class="reference internal" href="analytics.html">Population class extension: analytics module</a></li>
<li class="toctree-l2 current"><a class="current reference internal" href="#">Population class extension: cache module</a></li>
@@ -54,9 +54,11 @@
<li class="toctree-l2"><a class="reference internal" href="dataIO.html">Population class extension: dataIO module</a></li>
<li class="toctree-l2"><a class="reference internal" href="distribution_functions.html">Population class extension: distribution_functions module</a></li>
<li class="toctree-l2"><a class="reference internal" href="gridcode.html">Population class extension: gridcode module</a></li>
+<li class="toctree-l2"><a class="reference internal" href="grid_logging.html">Population class extension: grid_logging module</a></li>
<li class="toctree-l2"><a class="reference internal" href="grid_options_defaults.html">Population class extension: grid_options_defaults module</a></li>
<li class="toctree-l2"><a class="reference internal" href="HPC.html">Population class extension: HPC module</a></li>
<li class="toctree-l2"><a class="reference internal" href="metadata.html">Population class extension: metadata module</a></li>
+<li class="toctree-l2"><a class="reference internal" href="Moe_di_Stefano_2017.html">Population class extension: Moe_di_Stefano_2017 module</a></li>
<li class="toctree-l2"><a class="reference internal" href="slurm.html">Population class extension: slurm module</a></li>
<li class="toctree-l2"><a class="reference internal" href="spacing_functions.html">Population class extension: spacing_functions module</a></li>
<li class="toctree-l2"><a class="reference internal" href="version_info.html">Population class extension: version_info module</a></li>
@@ -213,9 +215,9 @@ given caches of size self.grid_options[‘function_cache_size’][func]</p>
provided by <a href="https://readthedocs.org">Read the Docs</a>.
<br><br>
-Generated on binarycpython git branch: development_0.9.3/2.2.1 git revision 8f3ed88f14c91d76a1fccf71294de4f0e9a160fd url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c-python/-/tree/development_0.9.3/2.2.1">git url</a>.
+Generated on binarycpython git branch: development_0.9.3/2.2.1 git revision 6c50cae388f9d9326bbb687ca0ecdc2df766f7f5 url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c-python/-/tree/development_0.9.3/2.2.1">git url</a>.
<br><br>
-Using binary_c with bit branch branch_david: git revision: "5834:20211216:a3146490e" url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c/-/tree/branch_david">git url</a>.
+Using binary_c with bit branch branch_david: git revision: "5845:20220107:201620bd7" url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c/-/tree/branch_david">git url</a>.
diff --git a/docs/build/html/population_extensions/condor.html b/docs/build/html/population_extensions/condor.html
index 4637f6534..a553a25e8 100644
--- a/docs/build/html/population_extensions/condor.html
+++ b/docs/build/html/population_extensions/condor.html
@@ -46,7 +46,7 @@
<li class="toctree-l2"><a class="reference internal" href="../dicts.html">dicts module</a></li>
<li class="toctree-l2"><a class="reference internal" href="../ensemble.html">ensemble module</a></li>
<li class="toctree-l2"><a class="reference internal" href="../functions.html">functions module</a></li>
-<li class="toctree-l2"><a class="reference internal" href="../grid.html">Population_class module</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../grid.html">Population class module</a></li>
<li class="toctree-l2"><a class="reference internal" href="../plot_functions.html">plot_functions module</a></li>
<li class="toctree-l2"><a class="reference internal" href="analytics.html">Population class extension: analytics module</a></li>
<li class="toctree-l2"><a class="reference internal" href="cache.html">Population class extension: cache module</a></li>
@@ -54,9 +54,11 @@
<li class="toctree-l2"><a class="reference internal" href="dataIO.html">Population class extension: dataIO module</a></li>
<li class="toctree-l2"><a class="reference internal" href="distribution_functions.html">Population class extension: distribution_functions module</a></li>
<li class="toctree-l2"><a class="reference internal" href="gridcode.html">Population class extension: gridcode module</a></li>
+<li class="toctree-l2"><a class="reference internal" href="grid_logging.html">Population class extension: grid_logging module</a></li>
<li class="toctree-l2"><a class="reference internal" href="grid_options_defaults.html">Population class extension: grid_options_defaults module</a></li>
<li class="toctree-l2"><a class="reference internal" href="HPC.html">Population class extension: HPC module</a></li>
<li class="toctree-l2"><a class="reference internal" href="metadata.html">Population class extension: metadata module</a></li>
+<li class="toctree-l2"><a class="reference internal" href="Moe_di_Stefano_2017.html">Population class extension: Moe_di_Stefano_2017 module</a></li>
<li class="toctree-l2"><a class="reference internal" href="slurm.html">Population class extension: slurm module</a></li>
<li class="toctree-l2"><a class="reference internal" href="spacing_functions.html">Population class extension: spacing_functions module</a></li>
<li class="toctree-l2"><a class="reference internal" href="version_info.html">Population class extension: version_info module</a></li>
@@ -230,9 +232,9 @@ if grid_options[‘condor’]==3, we are being called from the jobs to run the g
provided by <a href="https://readthedocs.org">Read the Docs</a>.
<br><br>
-Generated on binarycpython git branch: development_0.9.3/2.2.1 git revision 8f3ed88f14c91d76a1fccf71294de4f0e9a160fd url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c-python/-/tree/development_0.9.3/2.2.1">git url</a>.
+Generated on binarycpython git branch: development_0.9.3/2.2.1 git revision 6c50cae388f9d9326bbb687ca0ecdc2df766f7f5 url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c-python/-/tree/development_0.9.3/2.2.1">git url</a>.
<br><br>
-Using binary_c with bit branch branch_david: git revision: "5834:20211216:a3146490e" url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c/-/tree/branch_david">git url</a>.
+Using binary_c with bit branch branch_david: git revision: "5845:20220107:201620bd7" url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c/-/tree/branch_david">git url</a>.
diff --git a/docs/build/html/population_extensions/dataIO.html b/docs/build/html/population_extensions/dataIO.html
index 4dbec836f..3079463d1 100644
--- a/docs/build/html/population_extensions/dataIO.html
+++ b/docs/build/html/population_extensions/dataIO.html
@@ -46,7 +46,7 @@
<li class="toctree-l2"><a class="reference internal" href="../dicts.html">dicts module</a></li>
<li class="toctree-l2"><a class="reference internal" href="../ensemble.html">ensemble module</a></li>
<li class="toctree-l2"><a class="reference internal" href="../functions.html">functions module</a></li>
-<li class="toctree-l2"><a class="reference internal" href="../grid.html">Population_class module</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../grid.html">Population class module</a></li>
<li class="toctree-l2"><a class="reference internal" href="../plot_functions.html">plot_functions module</a></li>
<li class="toctree-l2"><a class="reference internal" href="analytics.html">Population class extension: analytics module</a></li>
<li class="toctree-l2"><a class="reference internal" href="cache.html">Population class extension: cache module</a></li>
@@ -54,9 +54,11 @@
<li class="toctree-l2 current"><a class="current reference internal" href="#">Population class extension: dataIO module</a></li>
<li class="toctree-l2"><a class="reference internal" href="distribution_functions.html">Population class extension: distribution_functions module</a></li>
<li class="toctree-l2"><a class="reference internal" href="gridcode.html">Population class extension: gridcode module</a></li>
+<li class="toctree-l2"><a class="reference internal" href="grid_logging.html">Population class extension: grid_logging module</a></li>
<li class="toctree-l2"><a class="reference internal" href="grid_options_defaults.html">Population class extension: grid_options_defaults module</a></li>
<li class="toctree-l2"><a class="reference internal" href="HPC.html">Population class extension: HPC module</a></li>
<li class="toctree-l2"><a class="reference internal" href="metadata.html">Population class extension: metadata module</a></li>
+<li class="toctree-l2"><a class="reference internal" href="Moe_di_Stefano_2017.html">Population class extension: Moe_di_Stefano_2017 module</a></li>
<li class="toctree-l2"><a class="reference internal" href="slurm.html">Population class extension: slurm module</a></li>
<li class="toctree-l2"><a class="reference internal" href="spacing_functions.html">Population class extension: spacing_functions module</a></li>
<li class="toctree-l2"><a class="reference internal" href="version_info.html">Population class extension: version_info module</a></li>
@@ -391,9 +393,9 @@ passed to json.dumps)</p></li>
provided by <a href="https://readthedocs.org">Read the Docs</a>.
<br><br>
-Generated on binarycpython git branch: development_0.9.3/2.2.1 git revision 8f3ed88f14c91d76a1fccf71294de4f0e9a160fd url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c-python/-/tree/development_0.9.3/2.2.1">git url</a>.
+Generated on binarycpython git branch: development_0.9.3/2.2.1 git revision 6c50cae388f9d9326bbb687ca0ecdc2df766f7f5 url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c-python/-/tree/development_0.9.3/2.2.1">git url</a>.
<br><br>
-Using binary_c with bit branch branch_david: git revision: "5834:20211216:a3146490e" url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c/-/tree/branch_david">git url</a>.
+Using binary_c with bit branch branch_david: git revision: "5845:20220107:201620bd7" url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c/-/tree/branch_david">git url</a>.
diff --git a/docs/build/html/population_extensions/distribution_functions.html b/docs/build/html/population_extensions/distribution_functions.html
index d8f2b989b..a3a7b04cf 100644
--- a/docs/build/html/population_extensions/distribution_functions.html
+++ b/docs/build/html/population_extensions/distribution_functions.html
@@ -46,7 +46,7 @@
<li class="toctree-l2"><a class="reference internal" href="../dicts.html">dicts module</a></li>
<li class="toctree-l2"><a class="reference internal" href="../ensemble.html">ensemble module</a></li>
<li class="toctree-l2"><a class="reference internal" href="../functions.html">functions module</a></li>
-<li class="toctree-l2"><a class="reference internal" href="../grid.html">Population_class module</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../grid.html">Population class module</a></li>
<li class="toctree-l2"><a class="reference internal" href="../plot_functions.html">plot_functions module</a></li>
<li class="toctree-l2"><a class="reference internal" href="analytics.html">Population class extension: analytics module</a></li>
<li class="toctree-l2"><a class="reference internal" href="cache.html">Population class extension: cache module</a></li>
@@ -54,9 +54,11 @@
<li class="toctree-l2"><a class="reference internal" href="dataIO.html">Population class extension: dataIO module</a></li>
<li class="toctree-l2 current"><a class="current reference internal" href="#">Population class extension: distribution_functions module</a></li>
<li class="toctree-l2"><a class="reference internal" href="gridcode.html">Population class extension: gridcode module</a></li>
+<li class="toctree-l2"><a class="reference internal" href="grid_logging.html">Population class extension: grid_logging module</a></li>
<li class="toctree-l2"><a class="reference internal" href="grid_options_defaults.html">Population class extension: grid_options_defaults module</a></li>
<li class="toctree-l2"><a class="reference internal" href="HPC.html">Population class extension: HPC module</a></li>
<li class="toctree-l2"><a class="reference internal" href="metadata.html">Population class extension: metadata module</a></li>
+<li class="toctree-l2"><a class="reference internal" href="Moe_di_Stefano_2017.html">Population class extension: Moe_di_Stefano_2017 module</a></li>
<li class="toctree-l2"><a class="reference internal" href="slurm.html">Population class extension: slurm module</a></li>
<li class="toctree-l2"><a class="reference internal" href="spacing_functions.html">Population class extension: spacing_functions module</a></li>
<li class="toctree-l2"><a class="reference internal" href="version_info.html">Population class extension: version_info module</a></li>
@@ -203,19 +205,19 @@ and Sana’s power law (as a function of logP) at high mass</p>
<dl class="py method">
<dt class="sig sig-object py" id="binarycpython.utils.population_extensions.distribution_functions.distribution_functions.Kroupa2001">
<span class="sig-name descname"><span class="pre">Kroupa2001</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">m</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">newopts</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/binarycpython/utils/population_extensions/distribution_functions.html#distribution_functions.Kroupa2001"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#binarycpython.utils.population_extensions.distribution_functions.distribution_functions.Kroupa2001" title="Permalink to this definition">ïƒ</a></dt>
-<dd><p>Probability distribution function for Kroupa 2001 IMF,
-where the default values to the three_part_powerlaw are:
-default = {</p>
-<blockquote>
-<div><p>“m0â€: 0.1,
-“m1â€: 0.5,
-“m2â€: 1,
-“mmaxâ€: 100,
-“p1â€: -1.3,
-“p2â€: -2.3,
-“p3â€: -2.3</p>
-</div></blockquote>
-<p>}</p>
+<dd><p>Probability distribution function for Kroupa 2001 IMF.</p>
+<p>The (default) values for this is:</p>
+<div class="highlight-default notranslate"><div class="highlight"><pre><span></span><span class="n">default</span> <span class="o">=</span> <span class="p">{</span>
+ <span class="s2">"m0"</span><span class="p">:</span> <span class="mf">0.1</span><span class="p">,</span>
+ <span class="s2">"m1"</span><span class="p">:</span> <span class="mf">0.5</span><span class="p">,</span>
+ <span class="s2">"m2"</span><span class="p">:</span> <span class="mi">1</span><span class="p">,</span>
+ <span class="s2">"mmax"</span><span class="p">:</span> <span class="mi">100</span><span class="p">,</span>
+ <span class="s2">"p1"</span><span class="p">:</span> <span class="o">-</span><span class="mf">1.3</span><span class="p">,</span>
+ <span class="s2">"p2"</span><span class="p">:</span> <span class="o">-</span><span class="mf">2.3</span><span class="p">,</span>
+ <span class="s2">"p3"</span><span class="p">:</span> <span class="o">-</span><span class="mf">2.3</span>
+<span class="p">}</span>
+</pre></div>
+</div>
<dl class="field-list simple">
<dt class="field-odd">Parameters</dt>
<dd class="field-odd"><ul class="simple">
@@ -831,9 +833,9 @@ and is be given by dp/dlogP ~ (logP)^p for all other binary configurations (defa
provided by <a href="https://readthedocs.org">Read the Docs</a>.
<br><br>
-Generated on binarycpython git branch: development_0.9.3/2.2.1 git revision 8f3ed88f14c91d76a1fccf71294de4f0e9a160fd url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c-python/-/tree/development_0.9.3/2.2.1">git url</a>.
+Generated on binarycpython git branch: development_0.9.3/2.2.1 git revision 6c50cae388f9d9326bbb687ca0ecdc2df766f7f5 url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c-python/-/tree/development_0.9.3/2.2.1">git url</a>.
<br><br>
-Using binary_c with bit branch branch_david: git revision: "5834:20211216:a3146490e" url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c/-/tree/branch_david">git url</a>.
+Using binary_c with bit branch branch_david: git revision: "5845:20220107:201620bd7" url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c/-/tree/branch_david">git url</a>.
diff --git a/docs/build/html/population_extensions/grid_logging.html b/docs/build/html/population_extensions/grid_logging.html
new file mode 100644
index 000000000..69871c029
--- /dev/null
+++ b/docs/build/html/population_extensions/grid_logging.html
@@ -0,0 +1,200 @@
+<!DOCTYPE html>
+<html class="writer-html5" lang="en" >
+<head>
+ <meta charset="utf-8" /><meta name="generator" content="Docutils 0.17.1: http://docutils.sourceforge.net/" />
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+ <title>Population class extension: grid_logging module — binary_c-python documentation</title>
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+<li class="toctree-l1"><a class="reference internal" href="../readme_link.html">Python module for binary_c</a></li>
+<li class="toctree-l1 current"><a class="reference internal" href="../modules.html">Binarycpython code</a><ul class="current">
+<li class="toctree-l2"><a class="reference internal" href="../custom_logging_functions.html">custom_logging_functions module</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../dicts.html">dicts module</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../ensemble.html">ensemble module</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../functions.html">functions module</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../grid.html">Population class module</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../plot_functions.html">plot_functions module</a></li>
+<li class="toctree-l2"><a class="reference internal" href="analytics.html">Population class extension: analytics module</a></li>
+<li class="toctree-l2"><a class="reference internal" href="cache.html">Population class extension: cache module</a></li>
+<li class="toctree-l2"><a class="reference internal" href="condor.html">Population class extension: condor module</a></li>
+<li class="toctree-l2"><a class="reference internal" href="dataIO.html">Population class extension: dataIO module</a></li>
+<li class="toctree-l2"><a class="reference internal" href="distribution_functions.html">Population class extension: distribution_functions module</a></li>
+<li class="toctree-l2"><a class="reference internal" href="gridcode.html">Population class extension: gridcode module</a></li>
+<li class="toctree-l2 current"><a class="current reference internal" href="#">Population class extension: grid_logging module</a></li>
+<li class="toctree-l2"><a class="reference internal" href="grid_options_defaults.html">Population class extension: grid_options_defaults module</a></li>
+<li class="toctree-l2"><a class="reference internal" href="HPC.html">Population class extension: HPC module</a></li>
+<li class="toctree-l2"><a class="reference internal" href="metadata.html">Population class extension: metadata module</a></li>
+<li class="toctree-l2"><a class="reference internal" href="Moe_di_Stefano_2017.html">Population class extension: Moe_di_Stefano_2017 module</a></li>
+<li class="toctree-l2"><a class="reference internal" href="slurm.html">Population class extension: slurm module</a></li>
+<li class="toctree-l2"><a class="reference internal" href="spacing_functions.html">Population class extension: spacing_functions module</a></li>
+<li class="toctree-l2"><a class="reference internal" href="version_info.html">Population class extension: version_info module</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../run_system_wrapper.html">run_system_wrapper module</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../stellar_types.html">stellar_types module</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../useful_funcs.html">useful_funcs module</a></li>
+</ul>
+</li>
+<li class="toctree-l1"><a class="reference internal" href="../example_notebooks.html">Example notebooks</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../binary_c_parameters.html">Binary_c parameters</a></li>
+<li class="toctree-l1"><a class="reference internal" href="../grid_options_descriptions.html">Population grid code options</a></li>
+<li class="toctree-l1"><a class="reference external" href="https://gitlab.eps.surrey.ac.uk/ri0005/binary_c-python">Visit the GitLab repo</a></li>
+<li class="toctree-l1"><a class="reference external" href="https://gitlab.eps.surrey.ac.uk/ri0005/binary_c-python/-/issues/new">Submit an issue</a></li>
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+</style>
+<section id="module-binarycpython.utils.population_extensions.grid_logging">
+<span id="population-class-extension-grid-logging-module"></span><h1>Population class extension: grid_logging module<a class="headerlink" href="#module-binarycpython.utils.population_extensions.grid_logging" title="Permalink to this headline">ïƒ</a></h1>
+<p>The class extension for the population object that contains logging functionality</p>
+<dl class="py class">
+<dt class="sig sig-object py" id="binarycpython.utils.population_extensions.grid_logging.grid_logging">
+<em class="property"><span class="pre">class</span><span class="w"> </span></em><span class="sig-prename descclassname"><span class="pre">binarycpython.utils.population_extensions.grid_logging.</span></span><span class="sig-name descname"><span class="pre">grid_logging</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="o"><span class="pre">**</span></span><span class="n"><span class="pre">kwargs</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/binarycpython/utils/population_extensions/grid_logging.html#grid_logging"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#binarycpython.utils.population_extensions.grid_logging.grid_logging" title="Permalink to this definition">ïƒ</a></dt>
+<dd><p>Bases: <code class="xref py py-class docutils literal notranslate"><span class="pre">object</span></code></p>
+<p>The class extension for the population object that contains logging functionality</p>
+<dl class="py method">
+<dt class="sig sig-object py" id="binarycpython.utils.population_extensions.grid_logging.grid_logging.vb1print">
+<span class="sig-name descname"><span class="pre">vb1print</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">ID</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">now</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">system_number</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">system_dict</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/binarycpython/utils/population_extensions/grid_logging.html#grid_logging.vb1print"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#binarycpython.utils.population_extensions.grid_logging.grid_logging.vb1print" title="Permalink to this definition">ïƒ</a></dt>
+<dd><p>Verbosity-level 1 printing, to keep an eye on a grid.</p>
+<dl class="simple">
+<dt>Input:</dt><dd><p>ID: thread ID for debugging (int): TODO fix this
+now: the time now as a UNIX-style epoch in seconds (float)
+system_number: the system number</p>
+</dd>
+</dl>
+</dd></dl>
+
+<dl class="py method">
+<dt class="sig sig-object py" id="binarycpython.utils.population_extensions.grid_logging.grid_logging.vb2print">
+<span class="sig-name descname"><span class="pre">vb2print</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">system_dict</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">cmdline_string</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/binarycpython/utils/population_extensions/grid_logging.html#grid_logging.vb2print"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#binarycpython.utils.population_extensions.grid_logging.grid_logging.vb2print" title="Permalink to this definition">ïƒ</a></dt>
+<dd><p>Extra function for verbose printing</p>
+</dd></dl>
+
+<dl class="py method">
+<dt class="sig sig-object py" id="binarycpython.utils.population_extensions.grid_logging.grid_logging.verbose_print">
+<span class="sig-name descname"><span class="pre">verbose_print</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="o"><span class="pre">*</span></span><span class="n"><span class="pre">args</span></span></em>, <em class="sig-param"><span class="o"><span class="pre">**</span></span><span class="n"><span class="pre">kwargs</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="../_modules/binarycpython/utils/population_extensions/grid_logging.html#grid_logging.verbose_print"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#binarycpython.utils.population_extensions.grid_logging.grid_logging.verbose_print" title="Permalink to this definition">ïƒ</a></dt>
+<dd><p>Wrapper method for the verbose print that calls the verbose print with the correct newline</p>
+<p>TODO: consider merging the two</p>
+</dd></dl>
+
+</dd></dl>
+
+</section>
+
+
+ </div>
+ </div>
+ <footer><div class="rst-footer-buttons" role="navigation" aria-label="Footer">
+ <a href="gridcode.html" class="btn btn-neutral float-left" title="Population class extension: gridcode module" accesskey="p" rel="prev"><span class="fa fa-arrow-circle-left" aria-hidden="true"></span> Previous</a>
+ <a href="grid_options_defaults.html" class="btn btn-neutral float-right" title="Population class extension: grid_options_defaults module" accesskey="n" rel="next">Next <span class="fa fa-arrow-circle-right" aria-hidden="true"></span></a>
+ </div>
+
+ <hr/>
+
+ <div role="contentinfo">
+ <p>© Copyright 2021, David Hendriks, Robert Izzard.</p>
+ </div>
+
+ Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using a
+ <a href="https://github.com/readthedocs/sphinx_rtd_theme">theme</a>
+ provided by <a href="https://readthedocs.org">Read the Docs</a>.
+
+<br><br>
+Generated on binarycpython git branch: development_0.9.3/2.2.1 git revision 6c50cae388f9d9326bbb687ca0ecdc2df766f7f5 url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c-python/-/tree/development_0.9.3/2.2.1">git url</a>.
+<br><br>
+Using binary_c with bit branch branch_david: git revision: "5845:20220107:201620bd7" url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c/-/tree/branch_david">git url</a>.
+
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\ No newline at end of file
diff --git a/docs/build/html/population_extensions/grid_options_defaults.html b/docs/build/html/population_extensions/grid_options_defaults.html
index 72175e007..8415ff2fc 100644
--- a/docs/build/html/population_extensions/grid_options_defaults.html
+++ b/docs/build/html/population_extensions/grid_options_defaults.html
@@ -20,7 +20,7 @@
<link rel="index" title="Index" href="../genindex.html" />
<link rel="search" title="Search" href="../search.html" />
<link rel="next" title="Population class extension: HPC module" href="HPC.html" />
- <link rel="prev" title="Population class extension: gridcode module" href="gridcode.html" />
+ <link rel="prev" title="Population class extension: grid_logging module" href="grid_logging.html" />
</head>
<body class="wy-body-for-nav">
@@ -46,7 +46,7 @@
<li class="toctree-l2"><a class="reference internal" href="../dicts.html">dicts module</a></li>
<li class="toctree-l2"><a class="reference internal" href="../ensemble.html">ensemble module</a></li>
<li class="toctree-l2"><a class="reference internal" href="../functions.html">functions module</a></li>
-<li class="toctree-l2"><a class="reference internal" href="../grid.html">Population_class module</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../grid.html">Population class module</a></li>
<li class="toctree-l2"><a class="reference internal" href="../plot_functions.html">plot_functions module</a></li>
<li class="toctree-l2"><a class="reference internal" href="analytics.html">Population class extension: analytics module</a></li>
<li class="toctree-l2"><a class="reference internal" href="cache.html">Population class extension: cache module</a></li>
@@ -54,9 +54,11 @@
<li class="toctree-l2"><a class="reference internal" href="dataIO.html">Population class extension: dataIO module</a></li>
<li class="toctree-l2"><a class="reference internal" href="distribution_functions.html">Population class extension: distribution_functions module</a></li>
<li class="toctree-l2"><a class="reference internal" href="gridcode.html">Population class extension: gridcode module</a></li>
+<li class="toctree-l2"><a class="reference internal" href="grid_logging.html">Population class extension: grid_logging module</a></li>
<li class="toctree-l2 current"><a class="current reference internal" href="#">Population class extension: grid_options_defaults module</a></li>
<li class="toctree-l2"><a class="reference internal" href="HPC.html">Population class extension: HPC module</a></li>
<li class="toctree-l2"><a class="reference internal" href="metadata.html">Population class extension: metadata module</a></li>
+<li class="toctree-l2"><a class="reference internal" href="Moe_di_Stefano_2017.html">Population class extension: Moe_di_Stefano_2017 module</a></li>
<li class="toctree-l2"><a class="reference internal" href="slurm.html">Population class extension: slurm module</a></li>
<li class="toctree-l2"><a class="reference internal" href="spacing_functions.html">Population class extension: spacing_functions module</a></li>
<li class="toctree-l2"><a class="reference internal" href="version_info.html">Population class extension: version_info module</a></li>
@@ -225,7 +227,7 @@
</div>
</div>
<footer><div class="rst-footer-buttons" role="navigation" aria-label="Footer">
- <a href="gridcode.html" class="btn btn-neutral float-left" title="Population class extension: gridcode module" accesskey="p" rel="prev"><span class="fa fa-arrow-circle-left" aria-hidden="true"></span> Previous</a>
+ <a href="grid_logging.html" class="btn btn-neutral float-left" title="Population class extension: grid_logging module" accesskey="p" rel="prev"><span class="fa fa-arrow-circle-left" aria-hidden="true"></span> Previous</a>
<a href="HPC.html" class="btn btn-neutral float-right" title="Population class extension: HPC module" accesskey="n" rel="next">Next <span class="fa fa-arrow-circle-right" aria-hidden="true"></span></a>
</div>
@@ -240,9 +242,9 @@
provided by <a href="https://readthedocs.org">Read the Docs</a>.
<br><br>
-Generated on binarycpython git branch: development_0.9.3/2.2.1 git revision 8f3ed88f14c91d76a1fccf71294de4f0e9a160fd url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c-python/-/tree/development_0.9.3/2.2.1">git url</a>.
+Generated on binarycpython git branch: development_0.9.3/2.2.1 git revision 6c50cae388f9d9326bbb687ca0ecdc2df766f7f5 url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c-python/-/tree/development_0.9.3/2.2.1">git url</a>.
<br><br>
-Using binary_c with bit branch branch_david: git revision: "5834:20211216:a3146490e" url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c/-/tree/branch_david">git url</a>.
+Using binary_c with bit branch branch_david: git revision: "5845:20220107:201620bd7" url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c/-/tree/branch_david">git url</a>.
diff --git a/docs/build/html/population_extensions/gridcode.html b/docs/build/html/population_extensions/gridcode.html
index 13c136f4b..e5faa63f4 100644
--- a/docs/build/html/population_extensions/gridcode.html
+++ b/docs/build/html/population_extensions/gridcode.html
@@ -19,7 +19,7 @@
<script src="../_static/js/theme.js"></script>
<link rel="index" title="Index" href="../genindex.html" />
<link rel="search" title="Search" href="../search.html" />
- <link rel="next" title="Population class extension: grid_options_defaults module" href="grid_options_defaults.html" />
+ <link rel="next" title="Population class extension: grid_logging module" href="grid_logging.html" />
<link rel="prev" title="Population class extension: distribution_functions module" href="distribution_functions.html" />
</head>
@@ -46,7 +46,7 @@
<li class="toctree-l2"><a class="reference internal" href="../dicts.html">dicts module</a></li>
<li class="toctree-l2"><a class="reference internal" href="../ensemble.html">ensemble module</a></li>
<li class="toctree-l2"><a class="reference internal" href="../functions.html">functions module</a></li>
-<li class="toctree-l2"><a class="reference internal" href="../grid.html">Population_class module</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../grid.html">Population class module</a></li>
<li class="toctree-l2"><a class="reference internal" href="../plot_functions.html">plot_functions module</a></li>
<li class="toctree-l2"><a class="reference internal" href="analytics.html">Population class extension: analytics module</a></li>
<li class="toctree-l2"><a class="reference internal" href="cache.html">Population class extension: cache module</a></li>
@@ -54,9 +54,11 @@
<li class="toctree-l2"><a class="reference internal" href="dataIO.html">Population class extension: dataIO module</a></li>
<li class="toctree-l2"><a class="reference internal" href="distribution_functions.html">Population class extension: distribution_functions module</a></li>
<li class="toctree-l2 current"><a class="current reference internal" href="#">Population class extension: gridcode module</a></li>
+<li class="toctree-l2"><a class="reference internal" href="grid_logging.html">Population class extension: grid_logging module</a></li>
<li class="toctree-l2"><a class="reference internal" href="grid_options_defaults.html">Population class extension: grid_options_defaults module</a></li>
<li class="toctree-l2"><a class="reference internal" href="HPC.html">Population class extension: HPC module</a></li>
<li class="toctree-l2"><a class="reference internal" href="metadata.html">Population class extension: metadata module</a></li>
+<li class="toctree-l2"><a class="reference internal" href="Moe_di_Stefano_2017.html">Population class extension: Moe_di_Stefano_2017 module</a></li>
<li class="toctree-l2"><a class="reference internal" href="slurm.html">Population class extension: slurm module</a></li>
<li class="toctree-l2"><a class="reference internal" href="spacing_functions.html">Population class extension: spacing_functions module</a></li>
<li class="toctree-l2"><a class="reference internal" href="version_info.html">Population class extension: version_info module</a></li>
@@ -266,7 +268,7 @@ of the self.grid_options[“_grid_variablesâ€] dictionary.</p>
</div>
<footer><div class="rst-footer-buttons" role="navigation" aria-label="Footer">
<a href="distribution_functions.html" class="btn btn-neutral float-left" title="Population class extension: distribution_functions module" accesskey="p" rel="prev"><span class="fa fa-arrow-circle-left" aria-hidden="true"></span> Previous</a>
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+ <a href="grid_logging.html" class="btn btn-neutral float-right" title="Population class extension: grid_logging module" accesskey="n" rel="next">Next <span class="fa fa-arrow-circle-right" aria-hidden="true"></span></a>
</div>
<hr/>
@@ -280,9 +282,9 @@ of the self.grid_options[“_grid_variablesâ€] dictionary.</p>
provided by <a href="https://readthedocs.org">Read the Docs</a>.
<br><br>
-Generated on binarycpython git branch: development_0.9.3/2.2.1 git revision 8f3ed88f14c91d76a1fccf71294de4f0e9a160fd url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c-python/-/tree/development_0.9.3/2.2.1">git url</a>.
+Generated on binarycpython git branch: development_0.9.3/2.2.1 git revision 6c50cae388f9d9326bbb687ca0ecdc2df766f7f5 url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c-python/-/tree/development_0.9.3/2.2.1">git url</a>.
<br><br>
-Using binary_c with bit branch branch_david: git revision: "5834:20211216:a3146490e" url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c/-/tree/branch_david">git url</a>.
+Using binary_c with bit branch branch_david: git revision: "5845:20220107:201620bd7" url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c/-/tree/branch_david">git url</a>.
diff --git a/docs/build/html/population_extensions/metadata.html b/docs/build/html/population_extensions/metadata.html
index 1a5541814..7f2ed7af2 100644
--- a/docs/build/html/population_extensions/metadata.html
+++ b/docs/build/html/population_extensions/metadata.html
@@ -19,7 +19,7 @@
<script src="../_static/js/theme.js"></script>
<link rel="index" title="Index" href="../genindex.html" />
<link rel="search" title="Search" href="../search.html" />
- <link rel="next" title="Population class extension: slurm module" href="slurm.html" />
+ <link rel="next" title="Population class extension: Moe_di_Stefano_2017 module" href="Moe_di_Stefano_2017.html" />
<link rel="prev" title="Population class extension: HPC module" href="HPC.html" />
</head>
@@ -46,7 +46,7 @@
<li class="toctree-l2"><a class="reference internal" href="../dicts.html">dicts module</a></li>
<li class="toctree-l2"><a class="reference internal" href="../ensemble.html">ensemble module</a></li>
<li class="toctree-l2"><a class="reference internal" href="../functions.html">functions module</a></li>
-<li class="toctree-l2"><a class="reference internal" href="../grid.html">Population_class module</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../grid.html">Population class module</a></li>
<li class="toctree-l2"><a class="reference internal" href="../plot_functions.html">plot_functions module</a></li>
<li class="toctree-l2"><a class="reference internal" href="analytics.html">Population class extension: analytics module</a></li>
<li class="toctree-l2"><a class="reference internal" href="cache.html">Population class extension: cache module</a></li>
@@ -54,9 +54,11 @@
<li class="toctree-l2"><a class="reference internal" href="dataIO.html">Population class extension: dataIO module</a></li>
<li class="toctree-l2"><a class="reference internal" href="distribution_functions.html">Population class extension: distribution_functions module</a></li>
<li class="toctree-l2"><a class="reference internal" href="gridcode.html">Population class extension: gridcode module</a></li>
+<li class="toctree-l2"><a class="reference internal" href="grid_logging.html">Population class extension: grid_logging module</a></li>
<li class="toctree-l2"><a class="reference internal" href="grid_options_defaults.html">Population class extension: grid_options_defaults module</a></li>
<li class="toctree-l2"><a class="reference internal" href="HPC.html">Population class extension: HPC module</a></li>
<li class="toctree-l2 current"><a class="current reference internal" href="#">Population class extension: metadata module</a></li>
+<li class="toctree-l2"><a class="reference internal" href="Moe_di_Stefano_2017.html">Population class extension: Moe_di_Stefano_2017 module</a></li>
<li class="toctree-l2"><a class="reference internal" href="slurm.html">Population class extension: slurm module</a></li>
<li class="toctree-l2"><a class="reference internal" href="spacing_functions.html">Population class extension: spacing_functions module</a></li>
<li class="toctree-l2"><a class="reference internal" href="version_info.html">Population class extension: version_info module</a></li>
@@ -151,7 +153,7 @@
</div>
<footer><div class="rst-footer-buttons" role="navigation" aria-label="Footer">
<a href="HPC.html" class="btn btn-neutral float-left" title="Population class extension: HPC module" accesskey="p" rel="prev"><span class="fa fa-arrow-circle-left" aria-hidden="true"></span> Previous</a>
- <a href="slurm.html" class="btn btn-neutral float-right" title="Population class extension: slurm module" accesskey="n" rel="next">Next <span class="fa fa-arrow-circle-right" aria-hidden="true"></span></a>
+ <a href="Moe_di_Stefano_2017.html" class="btn btn-neutral float-right" title="Population class extension: Moe_di_Stefano_2017 module" accesskey="n" rel="next">Next <span class="fa fa-arrow-circle-right" aria-hidden="true"></span></a>
</div>
<hr/>
@@ -165,9 +167,9 @@
provided by <a href="https://readthedocs.org">Read the Docs</a>.
<br><br>
-Generated on binarycpython git branch: development_0.9.3/2.2.1 git revision 8f3ed88f14c91d76a1fccf71294de4f0e9a160fd url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c-python/-/tree/development_0.9.3/2.2.1">git url</a>.
+Generated on binarycpython git branch: development_0.9.3/2.2.1 git revision 6c50cae388f9d9326bbb687ca0ecdc2df766f7f5 url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c-python/-/tree/development_0.9.3/2.2.1">git url</a>.
<br><br>
-Using binary_c with bit branch branch_david: git revision: "5834:20211216:a3146490e" url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c/-/tree/branch_david">git url</a>.
+Using binary_c with bit branch branch_david: git revision: "5845:20220107:201620bd7" url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c/-/tree/branch_david">git url</a>.
diff --git a/docs/build/html/population_extensions/slurm.html b/docs/build/html/population_extensions/slurm.html
index 7508d5182..8c6e0df9a 100644
--- a/docs/build/html/population_extensions/slurm.html
+++ b/docs/build/html/population_extensions/slurm.html
@@ -20,7 +20,7 @@
<link rel="index" title="Index" href="../genindex.html" />
<link rel="search" title="Search" href="../search.html" />
<link rel="next" title="Population class extension: spacing_functions module" href="spacing_functions.html" />
- <link rel="prev" title="Population class extension: metadata module" href="metadata.html" />
+ <link rel="prev" title="Population class extension: Moe_di_Stefano_2017 module" href="Moe_di_Stefano_2017.html" />
</head>
<body class="wy-body-for-nav">
@@ -46,7 +46,7 @@
<li class="toctree-l2"><a class="reference internal" href="../dicts.html">dicts module</a></li>
<li class="toctree-l2"><a class="reference internal" href="../ensemble.html">ensemble module</a></li>
<li class="toctree-l2"><a class="reference internal" href="../functions.html">functions module</a></li>
-<li class="toctree-l2"><a class="reference internal" href="../grid.html">Population_class module</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../grid.html">Population class module</a></li>
<li class="toctree-l2"><a class="reference internal" href="../plot_functions.html">plot_functions module</a></li>
<li class="toctree-l2"><a class="reference internal" href="analytics.html">Population class extension: analytics module</a></li>
<li class="toctree-l2"><a class="reference internal" href="cache.html">Population class extension: cache module</a></li>
@@ -54,9 +54,11 @@
<li class="toctree-l2"><a class="reference internal" href="dataIO.html">Population class extension: dataIO module</a></li>
<li class="toctree-l2"><a class="reference internal" href="distribution_functions.html">Population class extension: distribution_functions module</a></li>
<li class="toctree-l2"><a class="reference internal" href="gridcode.html">Population class extension: gridcode module</a></li>
+<li class="toctree-l2"><a class="reference internal" href="grid_logging.html">Population class extension: grid_logging module</a></li>
<li class="toctree-l2"><a class="reference internal" href="grid_options_defaults.html">Population class extension: grid_options_defaults module</a></li>
<li class="toctree-l2"><a class="reference internal" href="HPC.html">Population class extension: HPC module</a></li>
<li class="toctree-l2"><a class="reference internal" href="metadata.html">Population class extension: metadata module</a></li>
+<li class="toctree-l2"><a class="reference internal" href="Moe_di_Stefano_2017.html">Population class extension: Moe_di_Stefano_2017 module</a></li>
<li class="toctree-l2 current"><a class="current reference internal" href="#">Population class extension: slurm module</a></li>
<li class="toctree-l2"><a class="reference internal" href="spacing_functions.html">Population class extension: spacing_functions module</a></li>
<li class="toctree-l2"><a class="reference internal" href="version_info.html">Population class extension: version_info module</a></li>
@@ -216,7 +218,7 @@ if grid_options[‘slurm’]==3, we are being called from the jobs to run the gr
</div>
</div>
<footer><div class="rst-footer-buttons" role="navigation" aria-label="Footer">
- <a href="metadata.html" class="btn btn-neutral float-left" title="Population class extension: metadata module" accesskey="p" rel="prev"><span class="fa fa-arrow-circle-left" aria-hidden="true"></span> Previous</a>
+ <a href="Moe_di_Stefano_2017.html" class="btn btn-neutral float-left" title="Population class extension: Moe_di_Stefano_2017 module" accesskey="p" rel="prev"><span class="fa fa-arrow-circle-left" aria-hidden="true"></span> Previous</a>
<a href="spacing_functions.html" class="btn btn-neutral float-right" title="Population class extension: spacing_functions module" accesskey="n" rel="next">Next <span class="fa fa-arrow-circle-right" aria-hidden="true"></span></a>
</div>
@@ -231,9 +233,9 @@ if grid_options[‘slurm’]==3, we are being called from the jobs to run the gr
provided by <a href="https://readthedocs.org">Read the Docs</a>.
<br><br>
-Generated on binarycpython git branch: development_0.9.3/2.2.1 git revision 8f3ed88f14c91d76a1fccf71294de4f0e9a160fd url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c-python/-/tree/development_0.9.3/2.2.1">git url</a>.
+Generated on binarycpython git branch: development_0.9.3/2.2.1 git revision 6c50cae388f9d9326bbb687ca0ecdc2df766f7f5 url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c-python/-/tree/development_0.9.3/2.2.1">git url</a>.
<br><br>
-Using binary_c with bit branch branch_david: git revision: "5834:20211216:a3146490e" url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c/-/tree/branch_david">git url</a>.
+Using binary_c with bit branch branch_david: git revision: "5845:20220107:201620bd7" url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c/-/tree/branch_david">git url</a>.
diff --git a/docs/build/html/population_extensions/spacing_functions.html b/docs/build/html/population_extensions/spacing_functions.html
index 6a1e6ea6b..8d415b46d 100644
--- a/docs/build/html/population_extensions/spacing_functions.html
+++ b/docs/build/html/population_extensions/spacing_functions.html
@@ -46,7 +46,7 @@
<li class="toctree-l2"><a class="reference internal" href="../dicts.html">dicts module</a></li>
<li class="toctree-l2"><a class="reference internal" href="../ensemble.html">ensemble module</a></li>
<li class="toctree-l2"><a class="reference internal" href="../functions.html">functions module</a></li>
-<li class="toctree-l2"><a class="reference internal" href="../grid.html">Population_class module</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../grid.html">Population class module</a></li>
<li class="toctree-l2"><a class="reference internal" href="../plot_functions.html">plot_functions module</a></li>
<li class="toctree-l2"><a class="reference internal" href="analytics.html">Population class extension: analytics module</a></li>
<li class="toctree-l2"><a class="reference internal" href="cache.html">Population class extension: cache module</a></li>
@@ -54,9 +54,11 @@
<li class="toctree-l2"><a class="reference internal" href="dataIO.html">Population class extension: dataIO module</a></li>
<li class="toctree-l2"><a class="reference internal" href="distribution_functions.html">Population class extension: distribution_functions module</a></li>
<li class="toctree-l2"><a class="reference internal" href="gridcode.html">Population class extension: gridcode module</a></li>
+<li class="toctree-l2"><a class="reference internal" href="grid_logging.html">Population class extension: grid_logging module</a></li>
<li class="toctree-l2"><a class="reference internal" href="grid_options_defaults.html">Population class extension: grid_options_defaults module</a></li>
<li class="toctree-l2"><a class="reference internal" href="HPC.html">Population class extension: HPC module</a></li>
<li class="toctree-l2"><a class="reference internal" href="metadata.html">Population class extension: metadata module</a></li>
+<li class="toctree-l2"><a class="reference internal" href="Moe_di_Stefano_2017.html">Population class extension: Moe_di_Stefano_2017 module</a></li>
<li class="toctree-l2"><a class="reference internal" href="slurm.html">Population class extension: slurm module</a></li>
<li class="toctree-l2 current"><a class="current reference internal" href="#">Population class extension: spacing_functions module</a></li>
<li class="toctree-l2"><a class="reference internal" href="version_info.html">Population class extension: version_info module</a></li>
@@ -167,13 +169,15 @@
<dd class="field-even"><p>Array of masses.</p>
</dd>
</dl>
-<p>Example:
-# these are lines set as options to Population.add_grid_value(…)</p>
-<p># linear time bins of 1Gyr
-samplerfunc=â€self.const_dt(self,dt=1000,nres=100,mmin=0.07,mmax=2.0,showtable=True)â€</p>
-<p># logarithmic spacing in time, generally suitable for Galactic
-# chemical evolution yield grids.
-samplerfunc=â€self.const_dt(self,dlogt=0.1,nres=100,mmin=0.07,mmax=80.0,maxdm=((0.07,1.0,0.1),(1.0,10.0,1.0),(10.0,80.0,2.0)),showtable=True,logspacing=True,fsample=1.0/4.0)â€</p>
+<p class="rubric">Example</p>
+<p>these are lines set as options to Population.add_grid_value(…):</p>
+<div class="highlight-default notranslate"><div class="highlight"><pre><span></span><span class="c1"># linear time bins of 1Gyr</span>
+<span class="n">samplerfunc</span><span class="o">=</span><span class="s2">"self.const_dt(self,dt=1000,nres=100,mmin=0.07,mmax=2.0,showtable=True)"</span>
+
+<span class="c1"># logarithmic spacing in time, generally suitable for Galactic chemical evolution yield grids.</span>
+<span class="n">samplerfunc</span><span class="o">=</span><span class="s2">"self.const_dt(self,dlogt=0.1,nres=100,mmin=0.07,mmax=80.0,maxdm=((0.07,1.0,0.1),(1.0,10.0,1.0),(10.0,80.0,2.0)),showtable=True,logspacing=True,fsample=1.0/4.0)"</span>
+</pre></div>
+</div>
</dd></dl>
<dl class="py method">
@@ -237,14 +241,14 @@ samplerfunc=â€self.const_dt(self,dlogt=0.1,nres=100,mmin=0.07,mmax=80.0,maxdm=(
</dl>
<p class="rubric">Example</p>
<p>The following allocates 10 stars between 0.1 and 0.65, 20 stars between 0.65
-and 0.85, and 10 stars between 0.85 and 10.0 Msun.</p>
-<dl class="simple">
-<dt>samplerfunc=â€const_ranges((({},{},{}),({},{},{}),({},{},{})))â€.format(</dt><dd><p>0.1,0.65,10,
-0.65,0.85,20,
-0.85,10.0,10</p>
-</dd>
-</dl>
-<p>),</p>
+and 0.85, and 10 stars between 0.85 and 10.0 Msun:</p>
+<div class="highlight-default notranslate"><div class="highlight"><pre><span></span><span class="n">samplerfunc</span><span class="o">=</span><span class="s2">"const_ranges(((</span><span class="si">{}</span><span class="s2">,</span><span class="si">{}</span><span class="s2">,</span><span class="si">{}</span><span class="s2">),(</span><span class="si">{}</span><span class="s2">,</span><span class="si">{}</span><span class="s2">,</span><span class="si">{}</span><span class="s2">),(</span><span class="si">{}</span><span class="s2">,</span><span class="si">{}</span><span class="s2">,</span><span class="si">{}</span><span class="s2">)))"</span><span class="o">.</span><span class="n">format</span><span class="p">(</span>
+ <span class="mf">0.1</span><span class="p">,</span> <span class="mf">0.65</span><span class="p">,</span> <span class="mi">10</span><span class="p">,</span>
+ <span class="mf">0.65</span><span class="p">,</span> <span class="mf">0.85</span><span class="p">,</span> <span class="mi">20</span><span class="p">,</span>
+ <span class="mf">0.85</span><span class="p">,</span> <span class="mf">10.0</span><span class="p">,</span> <span class="mi">10</span>
+<span class="p">)</span>
+</pre></div>
+</div>
</dd></dl>
<dl class="py method">
@@ -318,9 +322,9 @@ not that the integral is 1.0</p>
provided by <a href="https://readthedocs.org">Read the Docs</a>.
<br><br>
-Generated on binarycpython git branch: development_0.9.3/2.2.1 git revision 8f3ed88f14c91d76a1fccf71294de4f0e9a160fd url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c-python/-/tree/development_0.9.3/2.2.1">git url</a>.
+Generated on binarycpython git branch: development_0.9.3/2.2.1 git revision 6c50cae388f9d9326bbb687ca0ecdc2df766f7f5 url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c-python/-/tree/development_0.9.3/2.2.1">git url</a>.
<br><br>
-Using binary_c with bit branch branch_david: git revision: "5834:20211216:a3146490e" url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c/-/tree/branch_david">git url</a>.
+Using binary_c with bit branch branch_david: git revision: "5845:20220107:201620bd7" url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c/-/tree/branch_david">git url</a>.
diff --git a/docs/build/html/population_extensions/version_info.html b/docs/build/html/population_extensions/version_info.html
index a287320ab..536485a49 100644
--- a/docs/build/html/population_extensions/version_info.html
+++ b/docs/build/html/population_extensions/version_info.html
@@ -46,7 +46,7 @@
<li class="toctree-l2"><a class="reference internal" href="../dicts.html">dicts module</a></li>
<li class="toctree-l2"><a class="reference internal" href="../ensemble.html">ensemble module</a></li>
<li class="toctree-l2"><a class="reference internal" href="../functions.html">functions module</a></li>
-<li class="toctree-l2"><a class="reference internal" href="../grid.html">Population_class module</a></li>
+<li class="toctree-l2"><a class="reference internal" href="../grid.html">Population class module</a></li>
<li class="toctree-l2"><a class="reference internal" href="../plot_functions.html">plot_functions module</a></li>
<li class="toctree-l2"><a class="reference internal" href="analytics.html">Population class extension: analytics module</a></li>
<li class="toctree-l2"><a class="reference internal" href="cache.html">Population class extension: cache module</a></li>
@@ -54,9 +54,11 @@
<li class="toctree-l2"><a class="reference internal" href="dataIO.html">Population class extension: dataIO module</a></li>
<li class="toctree-l2"><a class="reference internal" href="distribution_functions.html">Population class extension: distribution_functions module</a></li>
<li class="toctree-l2"><a class="reference internal" href="gridcode.html">Population class extension: gridcode module</a></li>
+<li class="toctree-l2"><a class="reference internal" href="grid_logging.html">Population class extension: grid_logging module</a></li>
<li class="toctree-l2"><a class="reference internal" href="grid_options_defaults.html">Population class extension: grid_options_defaults module</a></li>
<li class="toctree-l2"><a class="reference internal" href="HPC.html">Population class extension: HPC module</a></li>
<li class="toctree-l2"><a class="reference internal" href="metadata.html">Population class extension: metadata module</a></li>
+<li class="toctree-l2"><a class="reference internal" href="Moe_di_Stefano_2017.html">Population class extension: Moe_di_Stefano_2017 module</a></li>
<li class="toctree-l2"><a class="reference internal" href="slurm.html">Population class extension: slurm module</a></li>
<li class="toctree-l2"><a class="reference internal" href="spacing_functions.html">Population class extension: spacing_functions module</a></li>
<li class="toctree-l2 current"><a class="current reference internal" href="#">Population class extension: version_info module</a></li>
@@ -197,9 +199,9 @@ dictionary</p>
provided by <a href="https://readthedocs.org">Read the Docs</a>.
<br><br>
-Generated on binarycpython git branch: development_0.9.3/2.2.1 git revision 8f3ed88f14c91d76a1fccf71294de4f0e9a160fd url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c-python/-/tree/development_0.9.3/2.2.1">git url</a>.
+Generated on binarycpython git branch: development_0.9.3/2.2.1 git revision 6c50cae388f9d9326bbb687ca0ecdc2df766f7f5 url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c-python/-/tree/development_0.9.3/2.2.1">git url</a>.
<br><br>
-Using binary_c with bit branch branch_david: git revision: "5834:20211216:a3146490e" url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c/-/tree/branch_david">git url</a>.
+Using binary_c with bit branch branch_david: git revision: "5845:20220107:201620bd7" url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c/-/tree/branch_david">git url</a>.
diff --git a/docs/build/html/py-modindex.html b/docs/build/html/py-modindex.html
index fa56d2a07..563cac0ad 100644
--- a/docs/build/html/py-modindex.html
+++ b/docs/build/html/py-modindex.html
@@ -144,6 +144,11 @@
<td>   
<a href="population_extensions/distribution_functions.html#module-binarycpython.utils.population_extensions.distribution_functions"><code class="xref">binarycpython.utils.population_extensions.distribution_functions</code></a></td><td>
<em></em></td></tr>
+ <tr class="cg-1">
+ <td></td>
+ <td>   
+ <a href="population_extensions/grid_logging.html#module-binarycpython.utils.population_extensions.grid_logging"><code class="xref">binarycpython.utils.population_extensions.grid_logging</code></a></td><td>
+ <em></em></td></tr>
<tr class="cg-1">
<td></td>
<td>   
@@ -164,6 +169,11 @@
<td>   
<a href="population_extensions/metadata.html#module-binarycpython.utils.population_extensions.metadata"><code class="xref">binarycpython.utils.population_extensions.metadata</code></a></td><td>
<em></em></td></tr>
+ <tr class="cg-1">
+ <td></td>
+ <td>   
+ <a href="population_extensions/Moe_di_Stefano_2017.html#module-binarycpython.utils.population_extensions.Moe_di_Stefano_2017"><code class="xref">binarycpython.utils.population_extensions.Moe_di_Stefano_2017</code></a></td><td>
+ <em></em></td></tr>
<tr class="cg-1">
<td></td>
<td>   
@@ -212,9 +222,9 @@
provided by <a href="https://readthedocs.org">Read the Docs</a>.
<br><br>
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+Using binary_c with bit branch branch_david: git revision: "5845:20220107:201620bd7" url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c/-/tree/branch_david">git url</a>.
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+Using binary_c with bit branch branch_david: git revision: "5845:20220107:201620bd7" url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c/-/tree/branch_david">git url</a>.
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@@ -46,7 +46,7 @@
<li class="toctree-l2"><a class="reference internal" href="dicts.html">dicts module</a></li>
<li class="toctree-l2"><a class="reference internal" href="ensemble.html">ensemble module</a></li>
<li class="toctree-l2"><a class="reference internal" href="functions.html">functions module</a></li>
-<li class="toctree-l2"><a class="reference internal" href="grid.html">Population_class module</a></li>
+<li class="toctree-l2"><a class="reference internal" href="grid.html">Population class module</a></li>
<li class="toctree-l2"><a class="reference internal" href="plot_functions.html">plot_functions module</a></li>
<li class="toctree-l2"><a class="reference internal" href="population_extensions/analytics.html">Population class extension: analytics module</a></li>
<li class="toctree-l2"><a class="reference internal" href="population_extensions/cache.html">Population class extension: cache module</a></li>
@@ -54,9 +54,11 @@
<li class="toctree-l2"><a class="reference internal" href="population_extensions/dataIO.html">Population class extension: dataIO module</a></li>
<li class="toctree-l2"><a class="reference internal" href="population_extensions/distribution_functions.html">Population class extension: distribution_functions module</a></li>
<li class="toctree-l2"><a class="reference internal" href="population_extensions/gridcode.html">Population class extension: gridcode module</a></li>
+<li class="toctree-l2"><a class="reference internal" href="population_extensions/grid_logging.html">Population class extension: grid_logging module</a></li>
<li class="toctree-l2"><a class="reference internal" href="population_extensions/grid_options_defaults.html">Population class extension: grid_options_defaults module</a></li>
<li class="toctree-l2"><a class="reference internal" href="population_extensions/HPC.html">Population class extension: HPC module</a></li>
<li class="toctree-l2"><a class="reference internal" href="population_extensions/metadata.html">Population class extension: metadata module</a></li>
+<li class="toctree-l2"><a class="reference internal" href="population_extensions/Moe_di_Stefano_2017.html">Population class extension: Moe_di_Stefano_2017 module</a></li>
<li class="toctree-l2"><a class="reference internal" href="population_extensions/slurm.html">Population class extension: slurm module</a></li>
<li class="toctree-l2"><a class="reference internal" href="population_extensions/spacing_functions.html">Population class extension: spacing_functions module</a></li>
<li class="toctree-l2"><a class="reference internal" href="population_extensions/version_info.html">Population class extension: version_info module</a></li>
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+Using binary_c with bit branch branch_david: git revision: "5845:20220107:201620bd7" url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c/-/tree/branch_david">git url</a>.
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parameters","custom_logging_functions module","dicts module","ensemble module","Example notebooks","Example use case: Binary black hole systems","Example use case: Hertzsprung-Russell diagrams","Tutorial: Using the API functionality of binary_c-python","Example use case: Common-envelope evolution","Tutorial: Using custom logging routines with binary_c-python","Tutorial: Extra features and functionality of binary_c-python","Tutorial: Running individual systems with binary_c-python","Example use case: Zero-age stellar luminosity function in binaries","Example use case: Zero-age stellar luminosity function","Example use case: Massive star luminosity","Tutorial: Running populations with binary_c-python","Example use case: Solar system using the API functionality","<no title>","Binary_c and python example notebook","functions module","Population_class module","Population grid code options","Welcome to binary_c-python\u2019s documentation!","Binarycpython code","plot_functions 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parameters","custom_logging_functions module","dicts module","ensemble module","Example notebooks","Example use case: Binary black hole systems","Example use case: Hertzsprung-Russell diagrams","Tutorial: Using the API functionality of binary_c-python","Example use case: Common-envelope evolution","Tutorial: Using custom logging routines with binary_c-python","Tutorial: Extra features and functionality of binary_c-python","Tutorial: Running individual systems with binary_c-python","Example use case: Zero-age stellar luminosity function in binaries","Example use case: Zero-age stellar luminosity function","Example use case: Massive star luminosity","Tutorial: Running populations with binary_c-python","Example use case: Solar system using the API functionality","Basic example","Binary_c and python example notebook","functions module","Population class module","Population grid code options","Welcome to binary_c-python\u2019s documentation!","Binarycpython code","plot_functions 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\ No newline at end of file
diff --git a/docs/build/html/stellar_types.html b/docs/build/html/stellar_types.html
index 6b2e26021..91b01cd87 100644
--- a/docs/build/html/stellar_types.html
+++ b/docs/build/html/stellar_types.html
@@ -46,7 +46,7 @@
<li class="toctree-l2"><a class="reference internal" href="dicts.html">dicts module</a></li>
<li class="toctree-l2"><a class="reference internal" href="ensemble.html">ensemble module</a></li>
<li class="toctree-l2"><a class="reference internal" href="functions.html">functions module</a></li>
-<li class="toctree-l2"><a class="reference internal" href="grid.html">Population_class module</a></li>
+<li class="toctree-l2"><a class="reference internal" href="grid.html">Population class module</a></li>
<li class="toctree-l2"><a class="reference internal" href="plot_functions.html">plot_functions module</a></li>
<li class="toctree-l2"><a class="reference internal" href="population_extensions/analytics.html">Population class extension: analytics module</a></li>
<li class="toctree-l2"><a class="reference internal" href="population_extensions/cache.html">Population class extension: cache module</a></li>
@@ -54,9 +54,11 @@
<li class="toctree-l2"><a class="reference internal" href="population_extensions/dataIO.html">Population class extension: dataIO module</a></li>
<li class="toctree-l2"><a class="reference internal" href="population_extensions/distribution_functions.html">Population class extension: distribution_functions module</a></li>
<li class="toctree-l2"><a class="reference internal" href="population_extensions/gridcode.html">Population class extension: gridcode module</a></li>
+<li class="toctree-l2"><a class="reference internal" href="population_extensions/grid_logging.html">Population class extension: grid_logging module</a></li>
<li class="toctree-l2"><a class="reference internal" href="population_extensions/grid_options_defaults.html">Population class extension: grid_options_defaults module</a></li>
<li class="toctree-l2"><a class="reference internal" href="population_extensions/HPC.html">Population class extension: HPC module</a></li>
<li class="toctree-l2"><a class="reference internal" href="population_extensions/metadata.html">Population class extension: metadata module</a></li>
+<li class="toctree-l2"><a class="reference internal" href="population_extensions/Moe_di_Stefano_2017.html">Population class extension: Moe_di_Stefano_2017 module</a></li>
<li class="toctree-l2"><a class="reference internal" href="population_extensions/slurm.html">Population class extension: slurm module</a></li>
<li class="toctree-l2"><a class="reference internal" href="population_extensions/spacing_functions.html">Population class extension: spacing_functions module</a></li>
<li class="toctree-l2"><a class="reference internal" href="population_extensions/version_info.html">Population class extension: version_info module</a></li>
@@ -151,9 +153,9 @@
provided by <a href="https://readthedocs.org">Read the Docs</a>.
<br><br>
-Generated on binarycpython git branch: development_0.9.3/2.2.1 git revision 8f3ed88f14c91d76a1fccf71294de4f0e9a160fd url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c-python/-/tree/development_0.9.3/2.2.1">git url</a>.
+Generated on binarycpython git branch: development_0.9.3/2.2.1 git revision 6c50cae388f9d9326bbb687ca0ecdc2df766f7f5 url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c-python/-/tree/development_0.9.3/2.2.1">git url</a>.
<br><br>
-Using binary_c with bit branch branch_david: git revision: "5834:20211216:a3146490e" url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c/-/tree/branch_david">git url</a>.
+Using binary_c with bit branch branch_david: git revision: "5845:20220107:201620bd7" url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c/-/tree/branch_david">git url</a>.
diff --git a/docs/build/html/useful_funcs.html b/docs/build/html/useful_funcs.html
index 48676bb4c..c483bfbee 100644
--- a/docs/build/html/useful_funcs.html
+++ b/docs/build/html/useful_funcs.html
@@ -46,7 +46,7 @@
<li class="toctree-l2"><a class="reference internal" href="dicts.html">dicts module</a></li>
<li class="toctree-l2"><a class="reference internal" href="ensemble.html">ensemble module</a></li>
<li class="toctree-l2"><a class="reference internal" href="functions.html">functions module</a></li>
-<li class="toctree-l2"><a class="reference internal" href="grid.html">Population_class module</a></li>
+<li class="toctree-l2"><a class="reference internal" href="grid.html">Population class module</a></li>
<li class="toctree-l2"><a class="reference internal" href="plot_functions.html">plot_functions module</a></li>
<li class="toctree-l2"><a class="reference internal" href="population_extensions/analytics.html">Population class extension: analytics module</a></li>
<li class="toctree-l2"><a class="reference internal" href="population_extensions/cache.html">Population class extension: cache module</a></li>
@@ -54,9 +54,11 @@
<li class="toctree-l2"><a class="reference internal" href="population_extensions/dataIO.html">Population class extension: dataIO module</a></li>
<li class="toctree-l2"><a class="reference internal" href="population_extensions/distribution_functions.html">Population class extension: distribution_functions module</a></li>
<li class="toctree-l2"><a class="reference internal" href="population_extensions/gridcode.html">Population class extension: gridcode module</a></li>
+<li class="toctree-l2"><a class="reference internal" href="population_extensions/grid_logging.html">Population class extension: grid_logging module</a></li>
<li class="toctree-l2"><a class="reference internal" href="population_extensions/grid_options_defaults.html">Population class extension: grid_options_defaults module</a></li>
<li class="toctree-l2"><a class="reference internal" href="population_extensions/HPC.html">Population class extension: HPC module</a></li>
<li class="toctree-l2"><a class="reference internal" href="population_extensions/metadata.html">Population class extension: metadata module</a></li>
+<li class="toctree-l2"><a class="reference internal" href="population_extensions/Moe_di_Stefano_2017.html">Population class extension: Moe_di_Stefano_2017 module</a></li>
<li class="toctree-l2"><a class="reference internal" href="population_extensions/slurm.html">Population class extension: slurm module</a></li>
<li class="toctree-l2"><a class="reference internal" href="population_extensions/spacing_functions.html">Population class extension: spacing_functions module</a></li>
<li class="toctree-l2"><a class="reference internal" href="population_extensions/version_info.html">Population class extension: version_info module</a></li>
@@ -348,9 +350,9 @@ determine if two stars collide on the ZAMS</p>
provided by <a href="https://readthedocs.org">Read the Docs</a>.
<br><br>
-Generated on binarycpython git branch: development_0.9.3/2.2.1 git revision 8f3ed88f14c91d76a1fccf71294de4f0e9a160fd url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c-python/-/tree/development_0.9.3/2.2.1">git url</a>.
+Generated on binarycpython git branch: development_0.9.3/2.2.1 git revision 6c50cae388f9d9326bbb687ca0ecdc2df766f7f5 url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c-python/-/tree/development_0.9.3/2.2.1">git url</a>.
<br><br>
-Using binary_c with bit branch branch_david: git revision: "5834:20211216:a3146490e" url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c/-/tree/branch_david">git url</a>.
+Using binary_c with bit branch branch_david: git revision: "5845:20220107:201620bd7" url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c/-/tree/branch_david">git url</a>.
diff --git a/docs/source/_templates/footer.html b/docs/source/_templates/footer.html
index a8c7eda10..9f09b2054 100644
--- a/docs/source/_templates/footer.html
+++ b/docs/source/_templates/footer.html
@@ -2,8 +2,8 @@
{%- block extrafooter %}
<br><br>
-Generated on binarycpython git branch: development_0.9.3/2.2.1 git revision 8f3ed88f14c91d76a1fccf71294de4f0e9a160fd url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c-python/-/tree/development_0.9.3/2.2.1">git url</a>.
+Generated on binarycpython git branch: development_0.9.3/2.2.1 git revision 6c50cae388f9d9326bbb687ca0ecdc2df766f7f5 url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c-python/-/tree/development_0.9.3/2.2.1">git url</a>.
<br><br>
-Using binary_c with bit branch branch_david: git revision: "5834:20211216:a3146490e" url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c/-/tree/branch_david">git url</a>.
+Using binary_c with bit branch branch_david: git revision: "5845:20220107:201620bd7" url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c/-/tree/branch_david">git url</a>.
{% endblock %}
\ No newline at end of file
diff --git a/docs/source/binary_c_parameters.rst b/docs/source/binary_c_parameters.rst
index 8d359425f..2ecbfde05 100644
--- a/docs/source/binary_c_parameters.rst
+++ b/docs/source/binary_c_parameters.rst
@@ -4,7 +4,7 @@ The following chapter contains all the parameters that the current version of bi
This information was obtained by the following binary_c build:
- **binary_c git branch**: branch_david **binary_c git revision**: 5834:20211216:a3146490e **Built on**: Dec 20 2021 20:33:01
+ **binary_c git branch**: branch_david **binary_c git revision**: 5845:20220107:201620bd7 **Built on**: Jan 7 2022 12:15:12
Section: stars
@@ -1991,7 +1991,7 @@ Section: binary
| **Default value**: 1e-06
| **Parameter**: cbdisc_minimum_fRing
-| **Description**: Circumbinary disc minimum fRing. If the disc becomes a ring, and fRing = |Rout/Rin-1| < this value (and this value is non-zero), the disc is evaporated instantly. Requires DISCS.
+| **Description**: Circumbinary disc minimum fRing. If the disc becomes a ring, and fRing = abs(Rout/Rin-1) < this value (and this value is non-zero), the disc is evaporated instantly. Requires DISCS.
| **Parameter input type**: Float
| **Default value**: 0.2
diff --git a/docs/source/conf.py b/docs/source/conf.py
index 9f57831e8..a8a47d898 100644
--- a/docs/source/conf.py
+++ b/docs/source/conf.py
@@ -6,6 +6,9 @@ list see the documentation:
https://www.sphinx-doc.org/en/master/usage/configuration.html
https://brendanhasz.github.io/2019/01/05/sphinx.html
https://www.sphinx-doc.org/en/1.5/ext/example_google.html
+
+
+https://stackoverflow.com/questions/22256995/restructuredtext-in-sphinx-and-docstrings-single-vs-double-back-quotes-or-back
"""
# -- Path setup --------------------------------------------------------------
@@ -92,27 +95,6 @@ Using binary_c with bit branch {binary_c_git_branch}: git revision: {binary_c_gi
with open("_templates/footer.html", "w") as outfile_filehandle:
outfile_filehandle.write(formatted_text)
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
#
def patched_m2r2_setup(app):
"""
diff --git a/docs/source/examples/old/basic_example.ipynb b/docs/source/examples/old/basic_example.ipynb
index 9078cfcb5..7146b9767 100644
--- a/docs/source/examples/old/basic_example.ipynb
+++ b/docs/source/examples/old/basic_example.ipynb
@@ -1,5 +1,14 @@
{
"cells": [
+ {
+ "cell_type": "markdown",
+ "id": "c09b9f85-5250-4fd2-8142-bb8097d138b5",
+ "metadata": {},
+ "source": [
+ "# Basic example\n",
+ "Running a single system"
+ ]
+ },
{
"cell_type": "code",
"execution_count": 1,
@@ -106,7 +115,7 @@
],
"metadata": {
"kernelspec": {
- "display_name": "Python 3",
+ "display_name": "Python 3 (ipykernel)",
"language": "python",
"name": "python3"
},
@@ -120,7 +129,7 @@
"name": "python",
"nbconvert_exporter": "python",
"pygments_lexer": "ipython3",
- "version": "3.6.4"
+ "version": "3.9.9"
}
},
"nbformat": 4,
diff --git a/docs/source/examples/old/workshop_example_notebook.ipynb b/docs/source/examples/old/workshop_example_notebook.ipynb
index 4eca58797..78d0860ad 100644
--- a/docs/source/examples/old/workshop_example_notebook.ipynb
+++ b/docs/source/examples/old/workshop_example_notebook.ipynb
@@ -619,7 +619,7 @@
],
"metadata": {
"kernelspec": {
- "display_name": "Python 3",
+ "display_name": "Python 3 (ipykernel)",
"language": "python",
"name": "python3"
},
@@ -633,7 +633,7 @@
"name": "python",
"nbconvert_exporter": "python",
"pygments_lexer": "ipython3",
- "version": "3.6.4"
+ "version": "3.9.9"
}
},
"nbformat": 4,
diff --git a/docs/source/population_extensions/Moe_di_Stefano_2017.rst b/docs/source/population_extensions/Moe_di_Stefano_2017.rst
new file mode 100644
index 000000000..703e95162
--- /dev/null
+++ b/docs/source/population_extensions/Moe_di_Stefano_2017.rst
@@ -0,0 +1,7 @@
+Population class extension: Moe\_di\_Stefano\_2017 module
+=========================================================
+
+.. automodule:: binarycpython.utils.population_extensions.Moe_di_Stefano_2017
+ :members:
+ :undoc-members:
+ :show-inheritance:
diff --git a/docs/source/population_extensions/grid_logging.rst b/docs/source/population_extensions/grid_logging.rst
new file mode 100644
index 000000000..dc607c6ea
--- /dev/null
+++ b/docs/source/population_extensions/grid_logging.rst
@@ -0,0 +1,7 @@
+Population class extension: grid\_logging module
+================================================
+
+.. automodule:: binarycpython.utils.population_extensions.grid_logging
+ :members:
+ :undoc-members:
+ :show-inheritance:
--
GitLab