From 863fb8ad4f51fd982776bcd06f3d186d6f4bf26e Mon Sep 17 00:00:00 2001
From: Robert Izzard <r.izzard@surrey.ac.uk>
Date: Tue, 16 Nov 2021 19:04:35 +0000
Subject: [PATCH] add joinlist option
---
binarycpython/utils/HPC.py | 14 ++++++++++----
1 file changed, 10 insertions(+), 4 deletions(-)
diff --git a/binarycpython/utils/HPC.py b/binarycpython/utils/HPC.py
index 9220a23cb..ace9f8dae 100644
--- a/binarycpython/utils/HPC.py
+++ b/binarycpython/utils/HPC.py
@@ -21,13 +21,19 @@ class HPC(condor,slurm):
# don't do anything: we just inherit from this class
return
- def HPC_joinfiles(self):
+ def HPC_joinfiles(self,joinlist=None):
"""
Function to load in the joinlist to a list and return it.
"""
- f = open(self.grid_options['joinlist'],'r',encoding='utf-8')
- list = f.read().splitlines()
- f.close()
+ if joinlist is None:
+ joinlist = self.grid_options['joinlist']
+ f = open(joinlist,'r',encoding='utf-8')
+ if f:
+ list = f.read().splitlines()
+ f.close()
+ else:
+ print("Failed to open joinlist at {list}".format(list=joinlist))
+ self.exit(code=1)
return list
def HPC_join_from_files(self,newobj,joinfiles):
--
GitLab