From 7ac54f5f3df29f6d56789fda53c4e1b033920917 Mon Sep 17 00:00:00 2001 From: David Hendriks <davidhendriks93@gmail.com> Date: Fri, 10 Sep 2021 15:55:50 +0100 Subject: [PATCH] updated docs --- docs/build/doctrees/environment.pickle | Bin 562559 -> 563041 bytes .../nbsphinx/notebook_api_functionality.ipynb | 2 +- .../nbsphinx/notebook_custom_logging.ipynb | 2 +- .../nbsphinx/notebook_extra_features.ipynb | 2 +- .../notebook_individual_systems.ipynb | 2 +- ...otebook_luminosity_function_binaries.ipynb | 10 +----- .../notebook_luminosity_function_single.ipynb | 14 +++----- ...ebook_luminosity_function_single_25_1.png} | Bin ...ebook_luminosity_function_single_33_0.png} | Bin .../nbsphinx/notebook_population.ipynb | 2 +- .../notebook_api_functionality.doctree | Bin 416028 -> 416147 bytes .../doctrees/notebook_custom_logging.doctree | Bin 45697 -> 45820 bytes .../doctrees/notebook_extra_features.doctree | Bin 23687 -> 23811 bytes .../notebook_individual_systems.doctree | Bin 57802 -> 57922 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...ook_luminosity_function_binaries.ipynb.txt | 10 +----- ...ebook_luminosity_function_single.ipynb.txt | 14 +++----- .../_sources/notebook_population.ipynb.txt | 2 +- docs/build/html/binary_c_parameters.html | 6 ++-- docs/build/html/custom_logging_functions.html | 2 +- docs/build/html/distribution_functions.html | 2 +- docs/build/html/example_notebooks.html | 33 +++++++++--------- docs/build/html/functions.html | 2 +- docs/build/html/genindex.html | 2 +- docs/build/html/grid.html | 2 +- docs/build/html/grid_options_defaults.html | 2 +- .../build/html/grid_options_descriptions.html | 2 +- docs/build/html/hpc_functions.html | 2 +- docs/build/html/index.html | 15 ++++---- docs/build/html/modules.html | 2 +- .../html/notebook_api_functionality.html | 27 +++++++------- .../html/notebook_api_functionality.ipynb | 2 +- docs/build/html/notebook_custom_logging.html | 31 ++++++++-------- docs/build/html/notebook_custom_logging.ipynb | 2 +- docs/build/html/notebook_extra_features.html | 31 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docs/source/_templates/footer.html | 2 +- docs/source/notebook_api_functionality.ipynb | 2 +- docs/source/notebook_custom_logging.ipynb | 2 +- docs/source/notebook_extra_features.ipynb | 2 +- docs/source/notebook_individual_systems.ipynb | 2 +- ...otebook_luminosity_function_binaries.ipynb | 10 +----- .../notebook_luminosity_function_single.ipynb | 14 +++----- docs/source/notebook_population.ipynb | 2 +- 80 files changed, 193 insertions(+), 266 deletions(-) rename docs/build/doctrees/nbsphinx/{notebook_luminosity_function_single_26_1.png => notebook_luminosity_function_single_25_1.png} (100%) rename docs/build/doctrees/nbsphinx/{notebook_luminosity_function_single_34_0.png => notebook_luminosity_function_single_33_0.png} (100%) rename docs/build/html/_images/{notebook_luminosity_function_single_26_1.png => notebook_luminosity_function_single_25_1.png} (100%) rename docs/build/html/_images/{notebook_luminosity_function_single_34_0.png => notebook_luminosity_function_single_33_0.png} 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"cb9d00f5-9613-471e-a4bb-6181311bf73b", "metadata": {}, "source": [ - "# Using the API functionality of binarycpython\n", + "# Tutorial: Using the API functionality of binary_c-python\n", "This notebook shows how to use the API functions that interface with binary_c. It usually is better to use wrapper functions that internally use these API functions, because most of the output here is very raw\n", "\n", "Binarycpython uses the Python-C extension framework to interface Python with C. The sourcecode for this is contained in `src/binary_c_python.c`, and the functions are available via `from binarycpython import _binary_c_bindings`.\n", diff --git a/docs/build/doctrees/nbsphinx/notebook_custom_logging.ipynb b/docs/build/doctrees/nbsphinx/notebook_custom_logging.ipynb index 84e41e6bc..bfdf2a5c8 100644 --- a/docs/build/doctrees/nbsphinx/notebook_custom_logging.ipynb +++ b/docs/build/doctrees/nbsphinx/notebook_custom_logging.ipynb @@ -5,7 +5,7 @@ "id": "879b596b-d70c-4f90-b668-563b4ad93ffc", "metadata": {}, "source": [ - "# Using custom logging routines with binarycpython\n", + "# Tutorial: Using custom logging routines with binary_c-python\n", "In this notebook you'll learn how to use the custom logging functionality" ] }, diff --git a/docs/build/doctrees/nbsphinx/notebook_extra_features.ipynb b/docs/build/doctrees/nbsphinx/notebook_extra_features.ipynb index b1a9ddb03..076b4098e 100644 --- a/docs/build/doctrees/nbsphinx/notebook_extra_features.ipynb +++ b/docs/build/doctrees/nbsphinx/notebook_extra_features.ipynb @@ -5,7 +5,7 @@ "id": "d5c04b77-f0be-4b33-8c03-c72eb846527c", "metadata": {}, "source": [ - "# Extra features and functionality of binarycpython\n", + "# Tutorial: Extra features and functionality of binary_c-python\n", "In this notebook we'll go over some of the extra features and functionality that was not covered in the other notebooks.\n", "\n", "Within the module `binarycpython.utils.functions` there are many functions that can be useful when using binarycpython. We can see which functions are in there, again by using the `help()`" diff --git a/docs/build/doctrees/nbsphinx/notebook_individual_systems.ipynb b/docs/build/doctrees/nbsphinx/notebook_individual_systems.ipynb index 21d49016f..e6451e762 100644 --- a/docs/build/doctrees/nbsphinx/notebook_individual_systems.ipynb +++ b/docs/build/doctrees/nbsphinx/notebook_individual_systems.ipynb @@ -5,7 +5,7 @@ "id": "a544d28c-c2e1-4c6a-b55b-8caec440743f", "metadata": {}, "source": [ - "# Running individual systems with binarycpython\n", + "# Tutorial: Running individual systems with binary_c-python\n", "This notebook will show you how to run single systems and analyze their results.\n", "\n", "It can be useful to have some functions to quickly run a single system to e.g. inspect what evolutionary steps a specific system goes through, to plot the mass loss evolution of a single star, etc. " diff --git a/docs/build/doctrees/nbsphinx/notebook_luminosity_function_binaries.ipynb b/docs/build/doctrees/nbsphinx/notebook_luminosity_function_binaries.ipynb index fb64dbcc9..47a96d093 100644 --- a/docs/build/doctrees/nbsphinx/notebook_luminosity_function_binaries.ipynb +++ b/docs/build/doctrees/nbsphinx/notebook_luminosity_function_binaries.ipynb @@ -5,7 +5,7 @@ "id": "bbbaafbb-fd7d-4b73-a970-93506ba35d71", "metadata": {}, "source": [ - "# Zero-age stellar luminosity function in binaries\n", + "# Example use case: Zero-age stellar luminosity function in binaries\n", "\n", "In this notebook we compute the luminosity function of the zero-age main-sequence by running a population of binary stars using binary_c. \n", "\n", @@ -805,14 +805,6 @@ "p.set_ylabel(\"Number of stars\")\n", "p.set(yscale=\"log\")" ] - }, - { - "cell_type": "code", - "execution_count": null, - "id": "e7541ebf-fe9a-4fb0-a88e-bb318d06f9eb", - "metadata": {}, - "outputs": [], - "source": [] } ], "metadata": { diff --git a/docs/build/doctrees/nbsphinx/notebook_luminosity_function_single.ipynb b/docs/build/doctrees/nbsphinx/notebook_luminosity_function_single.ipynb index fb971b34a..5980adf6d 100644 --- a/docs/build/doctrees/nbsphinx/notebook_luminosity_function_single.ipynb +++ b/docs/build/doctrees/nbsphinx/notebook_luminosity_function_single.ipynb @@ -430,14 +430,6 @@ "Does this look like a reasonable stellar luminosity function to you? The implication is that the most likely stellar luminosity is 10<sup>5.8</sup> L<sub>☉</sub>! Clearly, this is not very realistic... let's see what went wrong." ] }, - { - "cell_type": "markdown", - "id": "44586e42-b7cb-4a55-be0a-330b98b20de4", - "metadata": {}, - "source": [ - "## " - ] - }, { "cell_type": "markdown", "id": "e32c3bbf-390f-45da-ad9c-cc3e7c9449dc", @@ -554,9 +546,11 @@ { "cell_type": "markdown", "id": "673031c9-7d80-45d4-b209-301c127d3edf", - "metadata": {}, + "metadata": { + "tags": [] + }, "source": [ - "# A better-sampled grid\n", + "## A better-sampled grid\n", "\n", "The IMF has many more low-mass stars than high-mass stars. So, instead of sampling M1 linearly, we can sample it in log space. \n", "\n", diff --git a/docs/build/doctrees/nbsphinx/notebook_luminosity_function_single_26_1.png b/docs/build/doctrees/nbsphinx/notebook_luminosity_function_single_25_1.png similarity index 100% rename from docs/build/doctrees/nbsphinx/notebook_luminosity_function_single_26_1.png rename to docs/build/doctrees/nbsphinx/notebook_luminosity_function_single_25_1.png diff --git a/docs/build/doctrees/nbsphinx/notebook_luminosity_function_single_34_0.png b/docs/build/doctrees/nbsphinx/notebook_luminosity_function_single_33_0.png similarity index 100% rename from docs/build/doctrees/nbsphinx/notebook_luminosity_function_single_34_0.png rename to docs/build/doctrees/nbsphinx/notebook_luminosity_function_single_33_0.png diff --git a/docs/build/doctrees/nbsphinx/notebook_population.ipynb b/docs/build/doctrees/nbsphinx/notebook_population.ipynb index f6f27ee43..fff337533 100644 --- a/docs/build/doctrees/nbsphinx/notebook_population.ipynb +++ b/docs/build/doctrees/nbsphinx/notebook_population.ipynb @@ -7,7 +7,7 @@ "tags": [] }, "source": [ - "# Running populations with binarycpython\n", + "# Tutorial: Running populations with binary_c-python\n", "This notebook will show you how to evolve a population of stars\n", "\n", "Much of the code in the binarycpython package is written to evolve a population of stars through the Population object, rather than running a single system. Let's go through the functionality of this object step by step and set up some example populations. \n", diff --git a/docs/build/doctrees/notebook_api_functionality.doctree b/docs/build/doctrees/notebook_api_functionality.doctree index 890f5ccb12977bd94483fecef8e7c6d2aec58e81..da47082e008333ce605f738f5db66ba51e9ad68f 100644 GIT binary patch delta 5528 zcmbVQ3s6+o8Rp#GJwOl^WJSTa3-TzeEQ%;0HbxXkcrCJsZlEBb!CtRCmX`sX7)|V0 z>kdBtb#9ZXp*ESQsZE>QWH(Ms)tSt+nM#yNrVrC+($?6tC8Tt0I<fYgbJ^Xycduj< zW)?1Y|L;5h<GcU)&;8yjsUW55_vufZd|6+>#ogaHG}zm}v!iQGI`nbbIW2A5ZLX0) zzPHE2N4I+TOt-$Vb9m4L9=FOgJt}DWEzf?><DOjJpf)lp`7C^in6w64rC)IuI8?)~ zEmeFvpTRG!iQ_GN5s!G?&^Eq0&rkOeT*brEW;}{eGhB-nP$xJxryI5t<7Q}&*=B5} z5I((*Us^|ikHTckUNlT?%*=+|TkA#zo}h!|9|j(awJz|l9j{y)CSuPSfZRF897I)c z_MR)~RoER@YIud*{xP(*e=X6i=LfsHJVU&h{}H+QB77QWLlUIVJBQwdiFuXG^cpeE zfbq&$lh=(01|RM0@An*{karm5k@#hXGvumBJXeI*!_+<TITqsZS%36ArX|SbUkbg! zpN0Kf7iZ-17u|-=Zr9+5r;|64Ql*g3qE_Y-WxXR#m*Xt+6~Bw06Y8sKCTTR`_F}Xc 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a/docs/build/html/_modules/binarycpython/utils/custom_logging_functions.html b/docs/build/html/_modules/binarycpython/utils/custom_logging_functions.html index 310a1536f..00bdbbf88 100644 --- a/docs/build/html/_modules/binarycpython/utils/custom_logging_functions.html +++ b/docs/build/html/_modules/binarycpython/utils/custom_logging_functions.html @@ -644,7 +644,7 @@ provided by <a href="https://readthedocs.org">Read the Docs</a>. <br><br> -Generated on binarycpython git branch: master git revision 9af65282f7f847c8638c85a39f03c803b635e442 url: <a href="https://gitlab.eps.surrey.ac.uk/ri0005/binary_c-python/-/tree/master">git url</a>. +Generated on binarycpython git branch: master git revision 0e871bc098f163940c2256300af798a29ad36e29 url: <a href="https://gitlab.eps.surrey.ac.uk/ri0005/binary_c-python/-/tree/master">git url</a>. <br><br> Using binary_c with bit branch newmaster: git revision: "6185:20210910:1621c23a5" url: <a href="https://gitlab.eps.surrey.ac.uk/ri0005/binary_c/-/tree/newmaster">git url</a>. diff --git a/docs/build/html/_modules/binarycpython/utils/distribution_functions.html b/docs/build/html/_modules/binarycpython/utils/distribution_functions.html index 93d532d7a..fc7733923 100644 --- a/docs/build/html/_modules/binarycpython/utils/distribution_functions.html +++ b/docs/build/html/_modules/binarycpython/utils/distribution_functions.html @@ -2482,7 +2482,7 @@ provided by <a href="https://readthedocs.org">Read the Docs</a>. <br><br> -Generated on binarycpython git branch: master git revision 9af65282f7f847c8638c85a39f03c803b635e442 url: <a href="https://gitlab.eps.surrey.ac.uk/ri0005/binary_c-python/-/tree/master">git url</a>. +Generated on binarycpython git branch: master git revision 0e871bc098f163940c2256300af798a29ad36e29 url: <a href="https://gitlab.eps.surrey.ac.uk/ri0005/binary_c-python/-/tree/master">git url</a>. <br><br> Using binary_c with bit branch newmaster: git revision: "6185:20210910:1621c23a5" url: <a href="https://gitlab.eps.surrey.ac.uk/ri0005/binary_c/-/tree/newmaster">git url</a>. diff --git a/docs/build/html/_modules/binarycpython/utils/functions.html b/docs/build/html/_modules/binarycpython/utils/functions.html index c3af7ccd6..ab66d8fec 100644 --- a/docs/build/html/_modules/binarycpython/utils/functions.html +++ b/docs/build/html/_modules/binarycpython/utils/functions.html @@ -2276,7 +2276,7 @@ provided by <a href="https://readthedocs.org">Read the Docs</a>. <br><br> -Generated on binarycpython git branch: master git revision 9af65282f7f847c8638c85a39f03c803b635e442 url: <a href="https://gitlab.eps.surrey.ac.uk/ri0005/binary_c-python/-/tree/master">git url</a>. +Generated on binarycpython git branch: master git revision 0e871bc098f163940c2256300af798a29ad36e29 url: <a href="https://gitlab.eps.surrey.ac.uk/ri0005/binary_c-python/-/tree/master">git url</a>. <br><br> Using binary_c with bit branch newmaster: git revision: "6185:20210910:1621c23a5" url: <a href="https://gitlab.eps.surrey.ac.uk/ri0005/binary_c/-/tree/newmaster">git url</a>. diff --git a/docs/build/html/_modules/binarycpython/utils/grid.html b/docs/build/html/_modules/binarycpython/utils/grid.html index ac7f7eae8..b0960a6bd 100644 --- a/docs/build/html/_modules/binarycpython/utils/grid.html +++ b/docs/build/html/_modules/binarycpython/utils/grid.html @@ -4442,7 +4442,7 @@ provided by <a href="https://readthedocs.org">Read the Docs</a>. <br><br> -Generated on binarycpython git branch: master git revision 9af65282f7f847c8638c85a39f03c803b635e442 url: <a href="https://gitlab.eps.surrey.ac.uk/ri0005/binary_c-python/-/tree/master">git url</a>. +Generated on binarycpython git branch: master git revision 0e871bc098f163940c2256300af798a29ad36e29 url: <a href="https://gitlab.eps.surrey.ac.uk/ri0005/binary_c-python/-/tree/master">git url</a>. <br><br> Using binary_c with bit branch newmaster: git revision: "6185:20210910:1621c23a5" url: <a href="https://gitlab.eps.surrey.ac.uk/ri0005/binary_c/-/tree/newmaster">git url</a>. diff --git a/docs/build/html/_modules/binarycpython/utils/grid_options_defaults.html b/docs/build/html/_modules/binarycpython/utils/grid_options_defaults.html index 4811d9522..cb847c3ec 100644 --- a/docs/build/html/_modules/binarycpython/utils/grid_options_defaults.html +++ b/docs/build/html/_modules/binarycpython/utils/grid_options_defaults.html @@ -1008,7 +1008,7 @@ provided by <a href="https://readthedocs.org">Read the Docs</a>. <br><br> -Generated on binarycpython git branch: master git revision 9af65282f7f847c8638c85a39f03c803b635e442 url: <a href="https://gitlab.eps.surrey.ac.uk/ri0005/binary_c-python/-/tree/master">git url</a>. +Generated on binarycpython git branch: master git revision 0e871bc098f163940c2256300af798a29ad36e29 url: <a href="https://gitlab.eps.surrey.ac.uk/ri0005/binary_c-python/-/tree/master">git url</a>. <br><br> Using binary_c with bit branch newmaster: git revision: "6185:20210910:1621c23a5" url: <a href="https://gitlab.eps.surrey.ac.uk/ri0005/binary_c/-/tree/newmaster">git url</a>. diff --git a/docs/build/html/_modules/binarycpython/utils/plot_functions.html b/docs/build/html/_modules/binarycpython/utils/plot_functions.html index 6269a61c3..93bc2be9c 100644 --- a/docs/build/html/_modules/binarycpython/utils/plot_functions.html +++ b/docs/build/html/_modules/binarycpython/utils/plot_functions.html @@ -829,7 +829,7 @@ provided by <a href="https://readthedocs.org">Read the Docs</a>. <br><br> -Generated on binarycpython git branch: master git revision 9af65282f7f847c8638c85a39f03c803b635e442 url: <a href="https://gitlab.eps.surrey.ac.uk/ri0005/binary_c-python/-/tree/master">git url</a>. +Generated on binarycpython git branch: master git revision 0e871bc098f163940c2256300af798a29ad36e29 url: <a href="https://gitlab.eps.surrey.ac.uk/ri0005/binary_c-python/-/tree/master">git url</a>. <br><br> Using binary_c with bit branch newmaster: git revision: "6185:20210910:1621c23a5" url: <a href="https://gitlab.eps.surrey.ac.uk/ri0005/binary_c/-/tree/newmaster">git url</a>. diff --git a/docs/build/html/_modules/binarycpython/utils/run_system_wrapper.html b/docs/build/html/_modules/binarycpython/utils/run_system_wrapper.html index 7f1a50500..0745bdead 100644 --- a/docs/build/html/_modules/binarycpython/utils/run_system_wrapper.html +++ b/docs/build/html/_modules/binarycpython/utils/run_system_wrapper.html @@ -298,7 +298,7 @@ provided by <a href="https://readthedocs.org">Read the Docs</a>. <br><br> -Generated on binarycpython git branch: master git revision 9af65282f7f847c8638c85a39f03c803b635e442 url: <a href="https://gitlab.eps.surrey.ac.uk/ri0005/binary_c-python/-/tree/master">git url</a>. +Generated on binarycpython git branch: master git revision 0e871bc098f163940c2256300af798a29ad36e29 url: <a href="https://gitlab.eps.surrey.ac.uk/ri0005/binary_c-python/-/tree/master">git url</a>. <br><br> Using binary_c with bit branch newmaster: git revision: "6185:20210910:1621c23a5" url: <a href="https://gitlab.eps.surrey.ac.uk/ri0005/binary_c/-/tree/newmaster">git url</a>. diff --git a/docs/build/html/_modules/binarycpython/utils/spacing_functions.html b/docs/build/html/_modules/binarycpython/utils/spacing_functions.html index c890ee053..3d13dc489 100644 --- a/docs/build/html/_modules/binarycpython/utils/spacing_functions.html +++ b/docs/build/html/_modules/binarycpython/utils/spacing_functions.html @@ -209,7 +209,7 @@ provided by <a href="https://readthedocs.org">Read the Docs</a>. <br><br> -Generated on binarycpython git branch: master git revision 9af65282f7f847c8638c85a39f03c803b635e442 url: <a href="https://gitlab.eps.surrey.ac.uk/ri0005/binary_c-python/-/tree/master">git url</a>. +Generated on binarycpython git branch: master git revision 0e871bc098f163940c2256300af798a29ad36e29 url: <a href="https://gitlab.eps.surrey.ac.uk/ri0005/binary_c-python/-/tree/master">git url</a>. <br><br> Using binary_c with bit branch newmaster: git revision: "6185:20210910:1621c23a5" url: <a href="https://gitlab.eps.surrey.ac.uk/ri0005/binary_c/-/tree/newmaster">git url</a>. diff --git a/docs/build/html/_modules/binarycpython/utils/useful_funcs.html b/docs/build/html/_modules/binarycpython/utils/useful_funcs.html index 0a193b389..49ec9f799 100644 --- a/docs/build/html/_modules/binarycpython/utils/useful_funcs.html +++ b/docs/build/html/_modules/binarycpython/utils/useful_funcs.html @@ -566,7 +566,7 @@ provided by <a href="https://readthedocs.org">Read the Docs</a>. <br><br> -Generated on binarycpython git branch: master git revision 9af65282f7f847c8638c85a39f03c803b635e442 url: <a href="https://gitlab.eps.surrey.ac.uk/ri0005/binary_c-python/-/tree/master">git url</a>. +Generated on binarycpython git branch: master git revision 0e871bc098f163940c2256300af798a29ad36e29 url: <a href="https://gitlab.eps.surrey.ac.uk/ri0005/binary_c-python/-/tree/master">git url</a>. <br><br> Using binary_c with bit branch newmaster: git revision: "6185:20210910:1621c23a5" url: <a href="https://gitlab.eps.surrey.ac.uk/ri0005/binary_c/-/tree/newmaster">git url</a>. diff --git a/docs/build/html/_modules/index.html b/docs/build/html/_modules/index.html index fc09ef11f..7e9cfd039 100644 --- a/docs/build/html/_modules/index.html +++ b/docs/build/html/_modules/index.html @@ -189,7 +189,7 @@ provided by <a href="https://readthedocs.org">Read the Docs</a>. <br><br> -Generated on binarycpython git branch: master git revision 9af65282f7f847c8638c85a39f03c803b635e442 url: <a href="https://gitlab.eps.surrey.ac.uk/ri0005/binary_c-python/-/tree/master">git url</a>. +Generated on binarycpython git branch: master git revision 0e871bc098f163940c2256300af798a29ad36e29 url: <a href="https://gitlab.eps.surrey.ac.uk/ri0005/binary_c-python/-/tree/master">git url</a>. <br><br> Using binary_c with bit branch newmaster: git revision: "6185:20210910:1621c23a5" url: <a href="https://gitlab.eps.surrey.ac.uk/ri0005/binary_c/-/tree/newmaster">git url</a>. diff --git a/docs/build/html/_sources/notebook_api_functionality.ipynb.txt b/docs/build/html/_sources/notebook_api_functionality.ipynb.txt index 8d454880c..020d2dc7c 100644 --- a/docs/build/html/_sources/notebook_api_functionality.ipynb.txt +++ b/docs/build/html/_sources/notebook_api_functionality.ipynb.txt @@ -5,7 +5,7 @@ "id": "cb9d00f5-9613-471e-a4bb-6181311bf73b", "metadata": {}, "source": [ - "# Using the API functionality of binarycpython\n", + "# Tutorial: Using the API functionality of binary_c-python\n", "This notebook shows how to use the API functions that interface with binary_c. It usually is better to use wrapper functions that internally use these API functions, because most of the output here is very raw\n", "\n", "Binarycpython uses the Python-C extension framework to interface Python with C. The sourcecode for this is contained in `src/binary_c_python.c`, and the functions are available via `from binarycpython import _binary_c_bindings`.\n", diff --git a/docs/build/html/_sources/notebook_custom_logging.ipynb.txt b/docs/build/html/_sources/notebook_custom_logging.ipynb.txt index 84e41e6bc..bfdf2a5c8 100644 --- a/docs/build/html/_sources/notebook_custom_logging.ipynb.txt +++ b/docs/build/html/_sources/notebook_custom_logging.ipynb.txt @@ -5,7 +5,7 @@ "id": "879b596b-d70c-4f90-b668-563b4ad93ffc", "metadata": {}, "source": [ - "# Using custom logging routines with binarycpython\n", + "# Tutorial: Using custom logging routines with binary_c-python\n", "In this notebook you'll learn how to use the custom logging functionality" ] }, diff --git a/docs/build/html/_sources/notebook_extra_features.ipynb.txt b/docs/build/html/_sources/notebook_extra_features.ipynb.txt index b1a9ddb03..076b4098e 100644 --- a/docs/build/html/_sources/notebook_extra_features.ipynb.txt +++ b/docs/build/html/_sources/notebook_extra_features.ipynb.txt @@ -5,7 +5,7 @@ "id": "d5c04b77-f0be-4b33-8c03-c72eb846527c", "metadata": {}, "source": [ - "# Extra features and functionality of binarycpython\n", + "# Tutorial: Extra features and functionality of binary_c-python\n", "In this notebook we'll go over some of the extra features and functionality that was not covered in the other notebooks.\n", "\n", "Within the module `binarycpython.utils.functions` there are many functions that can be useful when using binarycpython. We can see which functions are in there, again by using the `help()`" diff --git a/docs/build/html/_sources/notebook_individual_systems.ipynb.txt b/docs/build/html/_sources/notebook_individual_systems.ipynb.txt index 21d49016f..e6451e762 100644 --- a/docs/build/html/_sources/notebook_individual_systems.ipynb.txt +++ b/docs/build/html/_sources/notebook_individual_systems.ipynb.txt @@ -5,7 +5,7 @@ "id": "a544d28c-c2e1-4c6a-b55b-8caec440743f", "metadata": {}, "source": [ - "# Running individual systems with binarycpython\n", + "# Tutorial: Running individual systems with binary_c-python\n", "This notebook will show you how to run single systems and analyze their results.\n", "\n", "It can be useful to have some functions to quickly run a single system to e.g. inspect what evolutionary steps a specific system goes through, to plot the mass loss evolution of a single star, etc. " diff --git a/docs/build/html/_sources/notebook_luminosity_function_binaries.ipynb.txt b/docs/build/html/_sources/notebook_luminosity_function_binaries.ipynb.txt index fb64dbcc9..47a96d093 100644 --- a/docs/build/html/_sources/notebook_luminosity_function_binaries.ipynb.txt +++ b/docs/build/html/_sources/notebook_luminosity_function_binaries.ipynb.txt @@ -5,7 +5,7 @@ "id": "bbbaafbb-fd7d-4b73-a970-93506ba35d71", "metadata": {}, "source": [ - "# Zero-age stellar luminosity function in binaries\n", + "# Example use case: Zero-age stellar luminosity function in binaries\n", "\n", "In this notebook we compute the luminosity function of the zero-age main-sequence by running a population of binary stars using binary_c. \n", "\n", @@ -805,14 +805,6 @@ "p.set_ylabel(\"Number of stars\")\n", "p.set(yscale=\"log\")" ] - }, - { - "cell_type": "code", - "execution_count": null, - "id": "e7541ebf-fe9a-4fb0-a88e-bb318d06f9eb", - "metadata": {}, - "outputs": [], - "source": [] } ], "metadata": { diff --git a/docs/build/html/_sources/notebook_luminosity_function_single.ipynb.txt b/docs/build/html/_sources/notebook_luminosity_function_single.ipynb.txt index fb971b34a..5980adf6d 100644 --- a/docs/build/html/_sources/notebook_luminosity_function_single.ipynb.txt +++ b/docs/build/html/_sources/notebook_luminosity_function_single.ipynb.txt @@ -430,14 +430,6 @@ "Does this look like a reasonable stellar luminosity function to you? The implication is that the most likely stellar luminosity is 10<sup>5.8</sup> L<sub>☉</sub>! Clearly, this is not very realistic... let's see what went wrong." ] }, - { - "cell_type": "markdown", - "id": "44586e42-b7cb-4a55-be0a-330b98b20de4", - "metadata": {}, - "source": [ - "## " - ] - }, { "cell_type": "markdown", "id": "e32c3bbf-390f-45da-ad9c-cc3e7c9449dc", @@ -554,9 +546,11 @@ { "cell_type": "markdown", "id": "673031c9-7d80-45d4-b209-301c127d3edf", - "metadata": {}, + "metadata": { + "tags": [] + }, "source": [ - "# A better-sampled grid\n", + "## A better-sampled grid\n", "\n", "The IMF has many more low-mass stars than high-mass stars. So, instead of sampling M1 linearly, we can sample it in log space. \n", "\n", diff --git a/docs/build/html/_sources/notebook_population.ipynb.txt b/docs/build/html/_sources/notebook_population.ipynb.txt index f6f27ee43..fff337533 100644 --- a/docs/build/html/_sources/notebook_population.ipynb.txt +++ b/docs/build/html/_sources/notebook_population.ipynb.txt @@ -7,7 +7,7 @@ "tags": [] }, "source": [ - "# Running populations with binarycpython\n", + "# Tutorial: Running populations with binary_c-python\n", "This notebook will show you how to evolve a population of stars\n", "\n", "Much of the code in the binarycpython package is written to evolve a population of stars through the Population object, rather than running a single system. Let's go through the functionality of this object step by step and set up some example populations. \n", diff --git a/docs/build/html/binary_c_parameters.html b/docs/build/html/binary_c_parameters.html index b1131e2db..b7fbb9cf3 100644 --- a/docs/build/html/binary_c_parameters.html +++ b/docs/build/html/binary_c_parameters.html @@ -40,7 +40,7 @@ <link rel="index" title="Index" href="genindex.html" /> <link rel="search" title="Search" href="search.html" /> <link rel="next" title="Population grid code options" href="grid_options_descriptions.html" /> - <link rel="prev" title="Zero-age stellar luminosity function in binaries" href="notebook_luminosity_function_binaries.html" /> + <link rel="prev" title="Example use case: Zero-age stellar luminosity function in binaries" href="notebook_luminosity_function_binaries.html" /> </head> <body class="wy-body-for-nav"> @@ -3486,7 +3486,7 @@ <a href="grid_options_descriptions.html" class="btn btn-neutral float-right" title="Population grid code options" accesskey="n" rel="next">Next <span class="fa fa-arrow-circle-right"></span></a> - <a href="notebook_luminosity_function_binaries.html" class="btn btn-neutral float-left" title="Zero-age stellar luminosity function in binaries" accesskey="p" rel="prev"><span class="fa fa-arrow-circle-left"></span> Previous</a> + <a href="notebook_luminosity_function_binaries.html" class="btn btn-neutral float-left" title="Example use case: Zero-age stellar luminosity function in binaries" accesskey="p" rel="prev"><span class="fa fa-arrow-circle-left"></span> Previous</a> </div> @@ -3509,7 +3509,7 @@ provided by <a href="https://readthedocs.org">Read the Docs</a>. <br><br> -Generated on binarycpython git branch: master git revision 9af65282f7f847c8638c85a39f03c803b635e442 url: <a href="https://gitlab.eps.surrey.ac.uk/ri0005/binary_c-python/-/tree/master">git url</a>. +Generated on binarycpython git branch: master git revision 0e871bc098f163940c2256300af798a29ad36e29 url: <a href="https://gitlab.eps.surrey.ac.uk/ri0005/binary_c-python/-/tree/master">git url</a>. <br><br> Using binary_c with bit branch newmaster: git revision: "6185:20210910:1621c23a5" url: <a href="https://gitlab.eps.surrey.ac.uk/ri0005/binary_c/-/tree/newmaster">git url</a>. diff --git a/docs/build/html/custom_logging_functions.html b/docs/build/html/custom_logging_functions.html index 4903f865a..8f854c226 100644 --- a/docs/build/html/custom_logging_functions.html +++ b/docs/build/html/custom_logging_functions.html @@ -420,7 +420,7 @@ I recommend using this in function in combination with a function that generates provided by <a href="https://readthedocs.org">Read the Docs</a>. <br><br> -Generated on binarycpython git branch: master git revision 9af65282f7f847c8638c85a39f03c803b635e442 url: <a href="https://gitlab.eps.surrey.ac.uk/ri0005/binary_c-python/-/tree/master">git url</a>. +Generated on binarycpython git branch: master git revision 0e871bc098f163940c2256300af798a29ad36e29 url: <a href="https://gitlab.eps.surrey.ac.uk/ri0005/binary_c-python/-/tree/master">git url</a>. <br><br> Using binary_c with bit branch newmaster: git revision: "6185:20210910:1621c23a5" url: <a href="https://gitlab.eps.surrey.ac.uk/ri0005/binary_c/-/tree/newmaster">git url</a>. diff --git a/docs/build/html/distribution_functions.html b/docs/build/html/distribution_functions.html index dbddacf90..3af662f67 100644 --- a/docs/build/html/distribution_functions.html +++ b/docs/build/html/distribution_functions.html @@ -911,7 +911,7 @@ and is be given by dp/dlogP ~ (logP)^p for all other binary configurations (defa provided by <a href="https://readthedocs.org">Read the Docs</a>. <br><br> -Generated on binarycpython git branch: master git revision 9af65282f7f847c8638c85a39f03c803b635e442 url: <a href="https://gitlab.eps.surrey.ac.uk/ri0005/binary_c-python/-/tree/master">git url</a>. +Generated on binarycpython git branch: master git revision 0e871bc098f163940c2256300af798a29ad36e29 url: <a href="https://gitlab.eps.surrey.ac.uk/ri0005/binary_c-python/-/tree/master">git url</a>. <br><br> Using binary_c with bit branch newmaster: git revision: "6185:20210910:1621c23a5" url: <a href="https://gitlab.eps.surrey.ac.uk/ri0005/binary_c/-/tree/newmaster">git url</a>. diff --git a/docs/build/html/example_notebooks.html b/docs/build/html/example_notebooks.html index ec6f583d0..c2985b191 100644 --- a/docs/build/html/example_notebooks.html +++ b/docs/build/html/example_notebooks.html @@ -39,7 +39,7 @@ <link rel="index" title="Index" href="genindex.html" /> <link rel="search" title="Search" href="search.html" /> - <link rel="next" title="Running individual systems with binarycpython" href="notebook_individual_systems.html" /> + <link rel="next" title="Tutorial: Running individual systems with binary_c-python" href="notebook_individual_systems.html" /> <link rel="prev" title="useful_funcs module" href="useful_funcs.html" /> </head> @@ -90,14 +90,13 @@ <li class="toctree-l1"><a class="reference internal" href="readme_link.html">Python module for binary_c</a></li> <li class="toctree-l1"><a class="reference internal" href="modules.html">Binarycpython code</a></li> <li class="toctree-l1 current"><a class="current reference internal" href="#">Example notebooks</a><ul> -<li class="toctree-l2"><a class="reference internal" href="notebook_individual_systems.html">Running individual systems with binarycpython</a></li> -<li class="toctree-l2"><a class="reference internal" href="notebook_custom_logging.html">Using custom logging routines with binarycpython</a></li> -<li class="toctree-l2"><a class="reference internal" href="notebook_population.html">Running populations with binarycpython</a></li> -<li class="toctree-l2"><a class="reference internal" href="notebook_extra_features.html">Extra features and functionality of binarycpython</a></li> -<li class="toctree-l2"><a class="reference internal" href="notebook_api_functionality.html">Using the API functionality of binarycpython</a></li> +<li class="toctree-l2"><a class="reference internal" href="notebook_individual_systems.html">Tutorial: Running individual systems with binary_c-python</a></li> +<li class="toctree-l2"><a class="reference internal" href="notebook_custom_logging.html">Tutorial: Using custom logging routines with binary_c-python</a></li> +<li class="toctree-l2"><a class="reference internal" href="notebook_population.html">Tutorial: Running populations with binary_c-python</a></li> +<li class="toctree-l2"><a class="reference internal" href="notebook_extra_features.html">Tutorial: Extra features and functionality of binary_c-python</a></li> +<li class="toctree-l2"><a class="reference internal" href="notebook_api_functionality.html">Tutorial: Using the API functionality of binary_c-python</a></li> <li class="toctree-l2"><a class="reference internal" href="notebook_luminosity_function_single.html">Example use case: Zero-age stellar luminosity function</a></li> -<li class="toctree-l2"><a class="reference internal" href="notebook_luminosity_function_single.html#A-better-sampled-grid">A better-sampled grid</a></li> -<li class="toctree-l2"><a class="reference internal" href="notebook_luminosity_function_binaries.html">Zero-age stellar luminosity function in binaries</a></li> +<li class="toctree-l2"><a class="reference internal" href="notebook_luminosity_function_binaries.html">Example use case: Zero-age stellar luminosity function in binaries</a></li> </ul> </li> <li class="toctree-l1"><a class="reference internal" href="binary_c_parameters.html">Binary_c parameters</a></li> @@ -200,18 +199,18 @@ <div class="toctree-wrapper compound"> <p class="caption"><span class="caption-text">Contents:</span></p> <ul> -<li class="toctree-l1"><a class="reference internal" href="notebook_individual_systems.html">Running individual systems with binarycpython</a><ul> +<li class="toctree-l1"><a class="reference internal" href="notebook_individual_systems.html">Tutorial: Running individual systems with binary_c-python</a><ul> <li class="toctree-l2"><a class="reference internal" href="notebook_individual_systems.html#Single-system-with-run_wrapper">Single system with run_wrapper</a></li> <li class="toctree-l2"><a class="reference internal" href="notebook_individual_systems.html#Single-system-via-population-object">Single system via population object</a></li> <li class="toctree-l2"><a class="reference internal" href="notebook_individual_systems.html#Single-system-via-API-functionality">Single system via API functionality</a></li> </ul> </li> -<li class="toctree-l1"><a class="reference internal" href="notebook_custom_logging.html">Using custom logging routines with binarycpython</a><ul> +<li class="toctree-l1"><a class="reference internal" href="notebook_custom_logging.html">Tutorial: Using custom logging routines with binary_c-python</a><ul> <li class="toctree-l2"><a class="reference internal" href="notebook_custom_logging.html#Usage">Usage</a></li> <li class="toctree-l2"><a class="reference internal" href="notebook_custom_logging.html#Examples-of-logging-strings">Examples of logging strings</a></li> </ul> </li> -<li class="toctree-l1"><a class="reference internal" href="notebook_population.html">Running populations with binarycpython</a><ul> +<li class="toctree-l1"><a class="reference internal" href="notebook_population.html">Tutorial: Running populations with binary_c-python</a><ul> <li class="toctree-l2"><a class="reference internal" href="notebook_population.html#Setting-up-the-Population-object">Setting up the Population object</a></li> <li class="toctree-l2"><a class="reference internal" href="notebook_population.html#Adding-grid-variables">Adding grid variables</a></li> <li class="toctree-l2"><a class="reference internal" href="notebook_population.html#Setting-logging-and-handling-the-output">Setting logging and handling the output</a></li> @@ -220,7 +219,7 @@ <li class="toctree-l2"><a class="reference internal" href="notebook_population.html#Full-examples-of-population-scripts">Full examples of population scripts</a></li> </ul> </li> -<li class="toctree-l1"><a class="reference internal" href="notebook_extra_features.html">Extra features and functionality of binarycpython</a><ul> +<li class="toctree-l1"><a class="reference internal" href="notebook_extra_features.html">Tutorial: Extra features and functionality of binary_c-python</a><ul> <li class="toctree-l2"><a class="reference internal" href="notebook_extra_features.html#getting-extra-information-about-binary_c-parameters">getting extra information about binary_c parameters</a></li> <li class="toctree-l2"><a class="reference internal" href="notebook_extra_features.html#Build-information-of-binary_c">Build information of binary_c</a></li> <li class="toctree-l2"><a class="reference internal" href="notebook_extra_features.html#Example-parse-function">Example parse function</a></li> @@ -228,7 +227,7 @@ <li class="toctree-l2"><a class="reference internal" href="notebook_extra_features.html#Getting-help">Getting help</a></li> </ul> </li> -<li class="toctree-l1"><a class="reference internal" href="notebook_api_functionality.html">Using the API functionality of binarycpython</a><ul> +<li class="toctree-l1"><a class="reference internal" href="notebook_api_functionality.html">Tutorial: Using the API functionality of binary_c-python</a><ul> <li class="toctree-l2"><a class="reference internal" href="notebook_api_functionality.html#Example-usage:">Example usage:</a></li> </ul> </li> @@ -238,10 +237,10 @@ <li class="toctree-l2"><a class="reference internal" href="notebook_luminosity_function_single.html#Setting-logging-and-handling-the-output">Setting logging and handling the output</a></li> <li class="toctree-l2"><a class="reference internal" href="notebook_luminosity_function_single.html#Evolving-the-grid">Evolving the grid</a></li> <li class="toctree-l2"><a class="reference internal" href="notebook_luminosity_function_single.html#ZAMS-Luminosity-distribution-with-the-initial-mass-function">ZAMS Luminosity distribution with the initial mass function</a></li> +<li class="toctree-l2"><a class="reference internal" href="notebook_luminosity_function_single.html#A-better-sampled-grid">A better-sampled grid</a></li> </ul> </li> -<li class="toctree-l1"><a class="reference internal" href="notebook_luminosity_function_single.html#A-better-sampled-grid">A better-sampled grid</a></li> -<li class="toctree-l1"><a class="reference internal" href="notebook_luminosity_function_binaries.html">Zero-age stellar luminosity function in binaries</a><ul> +<li class="toctree-l1"><a class="reference internal" href="notebook_luminosity_function_binaries.html">Example use case: Zero-age stellar luminosity function in binaries</a><ul> <li class="toctree-l2"><a class="reference internal" href="notebook_luminosity_function_binaries.html#Setting-up-the-Population-object">Setting up the Population object</a></li> <li class="toctree-l2"><a class="reference internal" href="notebook_luminosity_function_binaries.html#Adding-grid-variables">Adding grid variables</a></li> <li class="toctree-l2"><a class="reference internal" href="notebook_luminosity_function_binaries.html#Setting-logging-and-handling-the-output">Setting logging and handling the output</a></li> @@ -260,7 +259,7 @@ <div class="rst-footer-buttons" role="navigation" aria-label="footer navigation"> - <a href="notebook_individual_systems.html" class="btn btn-neutral float-right" title="Running individual systems with binarycpython" accesskey="n" rel="next">Next <span class="fa fa-arrow-circle-right"></span></a> + <a href="notebook_individual_systems.html" class="btn btn-neutral float-right" title="Tutorial: Running individual systems with binary_c-python" accesskey="n" rel="next">Next <span class="fa fa-arrow-circle-right"></span></a> <a href="useful_funcs.html" class="btn btn-neutral float-left" title="useful_funcs module" accesskey="p" rel="prev"><span class="fa fa-arrow-circle-left"></span> Previous</a> @@ -286,7 +285,7 @@ provided by <a href="https://readthedocs.org">Read the Docs</a>. <br><br> -Generated on binarycpython git branch: master git revision 9af65282f7f847c8638c85a39f03c803b635e442 url: <a href="https://gitlab.eps.surrey.ac.uk/ri0005/binary_c-python/-/tree/master">git url</a>. +Generated on binarycpython git branch: master git revision 0e871bc098f163940c2256300af798a29ad36e29 url: <a href="https://gitlab.eps.surrey.ac.uk/ri0005/binary_c-python/-/tree/master">git url</a>. <br><br> Using binary_c with bit branch newmaster: git revision: "6185:20210910:1621c23a5" url: <a href="https://gitlab.eps.surrey.ac.uk/ri0005/binary_c/-/tree/newmaster">git url</a>. diff --git a/docs/build/html/functions.html b/docs/build/html/functions.html index 7b864f4e9..f2e044437 100644 --- a/docs/build/html/functions.html +++ b/docs/build/html/functions.html @@ -1027,7 +1027,7 @@ of all the binary_c parameters.</p> provided by <a href="https://readthedocs.org">Read the Docs</a>. <br><br> -Generated on binarycpython git branch: master git revision 9af65282f7f847c8638c85a39f03c803b635e442 url: <a href="https://gitlab.eps.surrey.ac.uk/ri0005/binary_c-python/-/tree/master">git url</a>. +Generated on binarycpython git branch: master git revision 0e871bc098f163940c2256300af798a29ad36e29 url: <a href="https://gitlab.eps.surrey.ac.uk/ri0005/binary_c-python/-/tree/master">git url</a>. <br><br> Using binary_c with bit branch newmaster: git revision: "6185:20210910:1621c23a5" url: <a href="https://gitlab.eps.surrey.ac.uk/ri0005/binary_c/-/tree/newmaster">git url</a>. diff --git a/docs/build/html/genindex.html b/docs/build/html/genindex.html index 59a3dccf3..e4179d7d5 100644 --- a/docs/build/html/genindex.html +++ b/docs/build/html/genindex.html @@ -782,7 +782,7 @@ provided by <a href="https://readthedocs.org">Read the Docs</a>. <br><br> -Generated on binarycpython git branch: master git revision 9af65282f7f847c8638c85a39f03c803b635e442 url: <a href="https://gitlab.eps.surrey.ac.uk/ri0005/binary_c-python/-/tree/master">git url</a>. +Generated on binarycpython git branch: master git revision 0e871bc098f163940c2256300af798a29ad36e29 url: <a href="https://gitlab.eps.surrey.ac.uk/ri0005/binary_c-python/-/tree/master">git url</a>. <br><br> Using binary_c with bit branch newmaster: git revision: "6185:20210910:1621c23a5" url: <a href="https://gitlab.eps.surrey.ac.uk/ri0005/binary_c/-/tree/newmaster">git url</a>. diff --git a/docs/build/html/grid.html b/docs/build/html/grid.html index 540448534..94641c943 100644 --- a/docs/build/html/grid.html +++ b/docs/build/html/grid.html @@ -633,7 +633,7 @@ like m1,m2,sep, orb-per, ecc, probability etc.</p> provided by <a href="https://readthedocs.org">Read the Docs</a>. <br><br> -Generated on binarycpython git branch: master git revision 9af65282f7f847c8638c85a39f03c803b635e442 url: <a href="https://gitlab.eps.surrey.ac.uk/ri0005/binary_c-python/-/tree/master">git url</a>. +Generated on binarycpython git branch: master git revision 0e871bc098f163940c2256300af798a29ad36e29 url: <a href="https://gitlab.eps.surrey.ac.uk/ri0005/binary_c-python/-/tree/master">git url</a>. <br><br> Using binary_c with bit branch newmaster: git revision: "6185:20210910:1621c23a5" url: <a href="https://gitlab.eps.surrey.ac.uk/ri0005/binary_c/-/tree/newmaster">git url</a>. diff --git a/docs/build/html/grid_options_defaults.html b/docs/build/html/grid_options_defaults.html index 4a2331f54..7c016a8cf 100644 --- a/docs/build/html/grid_options_defaults.html +++ b/docs/build/html/grid_options_defaults.html @@ -308,7 +308,7 @@ provided by <a href="https://readthedocs.org">Read the Docs</a>. <br><br> -Generated on binarycpython git branch: master git revision 9af65282f7f847c8638c85a39f03c803b635e442 url: <a href="https://gitlab.eps.surrey.ac.uk/ri0005/binary_c-python/-/tree/master">git url</a>. +Generated on binarycpython git branch: master git revision 0e871bc098f163940c2256300af798a29ad36e29 url: <a href="https://gitlab.eps.surrey.ac.uk/ri0005/binary_c-python/-/tree/master">git url</a>. <br><br> Using binary_c with bit branch newmaster: git revision: "6185:20210910:1621c23a5" url: <a href="https://gitlab.eps.surrey.ac.uk/ri0005/binary_c/-/tree/newmaster">git url</a>. diff --git a/docs/build/html/grid_options_descriptions.html b/docs/build/html/grid_options_descriptions.html index 2f50ad947..2ddcc302d 100644 --- a/docs/build/html/grid_options_descriptions.html +++ b/docs/build/html/grid_options_descriptions.html @@ -482,7 +482,7 @@ q extrapolation (below 0.15) method provided by <a href="https://readthedocs.org">Read the Docs</a>. <br><br> -Generated on binarycpython git branch: master git revision 9af65282f7f847c8638c85a39f03c803b635e442 url: <a href="https://gitlab.eps.surrey.ac.uk/ri0005/binary_c-python/-/tree/master">git url</a>. +Generated on binarycpython git branch: master git revision 0e871bc098f163940c2256300af798a29ad36e29 url: <a href="https://gitlab.eps.surrey.ac.uk/ri0005/binary_c-python/-/tree/master">git url</a>. <br><br> Using binary_c with bit branch newmaster: git revision: "6185:20210910:1621c23a5" url: <a href="https://gitlab.eps.surrey.ac.uk/ri0005/binary_c/-/tree/newmaster">git url</a>. diff --git a/docs/build/html/hpc_functions.html b/docs/build/html/hpc_functions.html index 8369b0da4..d88ba0dd9 100644 --- a/docs/build/html/hpc_functions.html +++ b/docs/build/html/hpc_functions.html @@ -239,7 +239,7 @@ provided by <a href="https://readthedocs.org">Read the Docs</a>. <br><br> -Generated on binarycpython git branch: master git revision 9af65282f7f847c8638c85a39f03c803b635e442 url: <a href="https://gitlab.eps.surrey.ac.uk/ri0005/binary_c-python/-/tree/master">git url</a>. +Generated on binarycpython git branch: master git revision 0e871bc098f163940c2256300af798a29ad36e29 url: <a href="https://gitlab.eps.surrey.ac.uk/ri0005/binary_c-python/-/tree/master">git url</a>. <br><br> Using binary_c with bit branch newmaster: git revision: "6185:20210910:1621c23a5" url: <a href="https://gitlab.eps.surrey.ac.uk/ri0005/binary_c/-/tree/newmaster">git url</a>. diff --git a/docs/build/html/index.html b/docs/build/html/index.html index 5ff56a81b..10521d44c 100644 --- a/docs/build/html/index.html +++ b/docs/build/html/index.html @@ -312,14 +312,13 @@ </ul> </li> <li class="toctree-l1"><a class="reference internal" href="example_notebooks.html">Example notebooks</a><ul> -<li class="toctree-l2"><a class="reference internal" href="notebook_individual_systems.html">Running individual systems with binarycpython</a></li> -<li class="toctree-l2"><a class="reference internal" href="notebook_custom_logging.html">Using custom logging routines with binarycpython</a></li> -<li class="toctree-l2"><a class="reference internal" href="notebook_population.html">Running populations with binarycpython</a></li> -<li class="toctree-l2"><a class="reference internal" href="notebook_extra_features.html">Extra features and functionality of binarycpython</a></li> -<li class="toctree-l2"><a class="reference internal" href="notebook_api_functionality.html">Using the API functionality of binarycpython</a></li> +<li class="toctree-l2"><a class="reference internal" href="notebook_individual_systems.html">Tutorial: Running individual systems with binary_c-python</a></li> +<li class="toctree-l2"><a class="reference internal" href="notebook_custom_logging.html">Tutorial: Using custom logging routines with binary_c-python</a></li> +<li class="toctree-l2"><a class="reference internal" href="notebook_population.html">Tutorial: Running populations with binary_c-python</a></li> +<li class="toctree-l2"><a class="reference internal" href="notebook_extra_features.html">Tutorial: Extra features and functionality of binary_c-python</a></li> +<li class="toctree-l2"><a class="reference internal" href="notebook_api_functionality.html">Tutorial: Using the API functionality of binary_c-python</a></li> <li class="toctree-l2"><a class="reference internal" href="notebook_luminosity_function_single.html">Example use case: Zero-age stellar luminosity function</a></li> -<li class="toctree-l2"><a class="reference internal" href="notebook_luminosity_function_single.html#A-better-sampled-grid">A better-sampled grid</a></li> -<li class="toctree-l2"><a class="reference internal" href="notebook_luminosity_function_binaries.html">Zero-age stellar luminosity function in binaries</a></li> +<li class="toctree-l2"><a class="reference internal" href="notebook_luminosity_function_binaries.html">Example use case: Zero-age stellar luminosity function in binaries</a></li> </ul> </li> <li class="toctree-l1"><a class="reference internal" href="binary_c_parameters.html">Binary_c parameters</a><ul> @@ -386,7 +385,7 @@ provided by <a href="https://readthedocs.org">Read the Docs</a>. <br><br> -Generated on binarycpython git branch: master git revision 9af65282f7f847c8638c85a39f03c803b635e442 url: <a href="https://gitlab.eps.surrey.ac.uk/ri0005/binary_c-python/-/tree/master">git url</a>. +Generated on binarycpython git branch: master git revision 0e871bc098f163940c2256300af798a29ad36e29 url: <a href="https://gitlab.eps.surrey.ac.uk/ri0005/binary_c-python/-/tree/master">git url</a>. <br><br> Using binary_c with bit branch newmaster: git revision: "6185:20210910:1621c23a5" url: <a href="https://gitlab.eps.surrey.ac.uk/ri0005/binary_c/-/tree/newmaster">git url</a>. diff --git a/docs/build/html/modules.html b/docs/build/html/modules.html index 84f5c150a..8b5127acb 100644 --- a/docs/build/html/modules.html +++ b/docs/build/html/modules.html @@ -250,7 +250,7 @@ provided by <a href="https://readthedocs.org">Read the Docs</a>. <br><br> -Generated on binarycpython git branch: master git revision 9af65282f7f847c8638c85a39f03c803b635e442 url: <a href="https://gitlab.eps.surrey.ac.uk/ri0005/binary_c-python/-/tree/master">git url</a>. +Generated on binarycpython git branch: master git revision 0e871bc098f163940c2256300af798a29ad36e29 url: <a href="https://gitlab.eps.surrey.ac.uk/ri0005/binary_c-python/-/tree/master">git url</a>. <br><br> Using binary_c with bit branch newmaster: git revision: "6185:20210910:1621c23a5" url: <a href="https://gitlab.eps.surrey.ac.uk/ri0005/binary_c/-/tree/newmaster">git url</a>. diff --git a/docs/build/html/notebook_api_functionality.html b/docs/build/html/notebook_api_functionality.html index 155f85e6b..c10f7f17e 100644 --- a/docs/build/html/notebook_api_functionality.html +++ b/docs/build/html/notebook_api_functionality.html @@ -7,7 +7,7 @@ <meta name="viewport" content="width=device-width, initial-scale=1.0"> - <title>Using the API functionality of binarycpython — binary_c-python documentation</title> + <title>Tutorial: Using the API functionality of binary_c-python — binary_c-python documentation</title> @@ -40,7 +40,7 @@ <link rel="index" title="Index" href="genindex.html" /> <link rel="search" title="Search" href="search.html" /> <link rel="next" title="Example use case: Zero-age stellar luminosity function" href="notebook_luminosity_function_single.html" /> - <link rel="prev" title="Extra features and functionality of binarycpython" href="notebook_extra_features.html" /> + <link rel="prev" title="Tutorial: Extra features and functionality of binary_c-python" href="notebook_extra_features.html" /> </head> <body class="wy-body-for-nav"> @@ -90,11 +90,11 @@ <li class="toctree-l1"><a class="reference internal" href="readme_link.html">Python module for binary_c</a></li> <li class="toctree-l1"><a class="reference internal" href="modules.html">Binarycpython code</a></li> <li class="toctree-l1 current"><a class="reference internal" href="example_notebooks.html">Example notebooks</a><ul class="current"> -<li class="toctree-l2"><a class="reference internal" href="notebook_individual_systems.html">Running individual systems with binarycpython</a></li> -<li class="toctree-l2"><a class="reference internal" href="notebook_custom_logging.html">Using custom logging routines with binarycpython</a></li> -<li class="toctree-l2"><a class="reference internal" href="notebook_population.html">Running populations with binarycpython</a></li> -<li class="toctree-l2"><a class="reference internal" href="notebook_extra_features.html">Extra features and functionality of binarycpython</a></li> -<li class="toctree-l2 current"><a class="current reference internal" href="#">Using the API functionality of binarycpython</a><ul> +<li class="toctree-l2"><a class="reference internal" href="notebook_individual_systems.html">Tutorial: Running individual systems with binary_c-python</a></li> +<li class="toctree-l2"><a class="reference internal" href="notebook_custom_logging.html">Tutorial: Using custom logging routines with binary_c-python</a></li> +<li class="toctree-l2"><a class="reference internal" href="notebook_population.html">Tutorial: Running populations with binary_c-python</a></li> +<li class="toctree-l2"><a class="reference internal" href="notebook_extra_features.html">Tutorial: Extra features and functionality of binary_c-python</a></li> +<li class="toctree-l2 current"><a class="current reference internal" href="#">Tutorial: Using the API functionality of binary_c-python</a><ul> <li class="toctree-l3"><a class="reference internal" href="#Example-usage:">Example usage:</a><ul> <li class="toctree-l4"><a class="reference internal" href="#Setting-up,-using-and-freeing-store">Setting up, using and freeing store</a></li> <li class="toctree-l4"><a class="reference internal" href="#Getting-information-from-binary_c">Getting information from binary_c</a></li> @@ -103,8 +103,7 @@ </ul> </li> <li class="toctree-l2"><a class="reference internal" href="notebook_luminosity_function_single.html">Example use case: Zero-age stellar luminosity function</a></li> -<li class="toctree-l2"><a class="reference internal" href="notebook_luminosity_function_single.html#A-better-sampled-grid">A better-sampled grid</a></li> -<li class="toctree-l2"><a class="reference internal" href="notebook_luminosity_function_binaries.html">Zero-age stellar luminosity function in binaries</a></li> +<li class="toctree-l2"><a class="reference internal" href="notebook_luminosity_function_binaries.html">Example use case: Zero-age stellar luminosity function in binaries</a></li> </ul> </li> <li class="toctree-l1"><a class="reference internal" href="binary_c_parameters.html">Binary_c parameters</a></li> @@ -159,7 +158,7 @@ <li><a href="example_notebooks.html">Example notebooks</a> »</li> - <li>Using the API functionality of binarycpython</li> + <li>Tutorial: Using the API functionality of binary_c-python</li> <li class="wy-breadcrumbs-aside"> @@ -448,8 +447,8 @@ div.rendered_html tbody tr:hover { text-align: unset; } </style> -<div class="section" id="Using-the-API-functionality-of-binarycpython"> -<h1>Using the API functionality of binarycpython<a class="headerlink" href="#Using-the-API-functionality-of-binarycpython" title="Permalink to this headline">¶</a></h1> +<div class="section" id="Tutorial:-Using-the-API-functionality-of-binary_c-python"> +<h1>Tutorial: Using the API functionality of binary_c-python<a class="headerlink" href="#Tutorial:-Using-the-API-functionality-of-binary_c-python" title="Permalink to this headline">¶</a></h1> <p>This notebook shows how to use the API functions that interface with binary_c. It usually is better to use wrapper functions that internally use these API functions, because most of the output here is very raw</p> <p>Binarycpython uses the Python-C extension framework to interface Python with C. The sourcecode for this is contained in <code class="docutils literal notranslate"><span class="pre">src/binary_c_python.c</span></code>, and the functions are available via <code class="docutils literal notranslate"><span class="pre">from</span> <span class="pre">binarycpython</span> <span class="pre">import</span> <span class="pre">_binary_c_bindings</span></code>.</p> <p>The following functions are available through the API: (run cell below)</p> @@ -1363,7 +1362,7 @@ MAXIMUM MASS RATIO 0.0141 <a href="notebook_luminosity_function_single.html" class="btn btn-neutral float-right" title="Example use case: Zero-age stellar luminosity function" accesskey="n" rel="next">Next <span class="fa fa-arrow-circle-right"></span></a> - <a href="notebook_extra_features.html" class="btn btn-neutral float-left" title="Extra features and functionality of binarycpython" accesskey="p" rel="prev"><span class="fa fa-arrow-circle-left"></span> Previous</a> + <a href="notebook_extra_features.html" class="btn btn-neutral float-left" title="Tutorial: Extra features and functionality of binary_c-python" accesskey="p" rel="prev"><span class="fa fa-arrow-circle-left"></span> Previous</a> </div> @@ -1386,7 +1385,7 @@ MAXIMUM MASS RATIO 0.0141 provided by <a href="https://readthedocs.org">Read the Docs</a>. <br><br> -Generated on binarycpython git branch: master git revision 9af65282f7f847c8638c85a39f03c803b635e442 url: <a href="https://gitlab.eps.surrey.ac.uk/ri0005/binary_c-python/-/tree/master">git url</a>. +Generated on binarycpython git branch: master git revision 0e871bc098f163940c2256300af798a29ad36e29 url: <a href="https://gitlab.eps.surrey.ac.uk/ri0005/binary_c-python/-/tree/master">git url</a>. <br><br> Using binary_c with bit branch newmaster: git revision: "6185:20210910:1621c23a5" url: <a href="https://gitlab.eps.surrey.ac.uk/ri0005/binary_c/-/tree/newmaster">git url</a>. diff --git a/docs/build/html/notebook_api_functionality.ipynb b/docs/build/html/notebook_api_functionality.ipynb index 8d454880c..020d2dc7c 100644 --- a/docs/build/html/notebook_api_functionality.ipynb +++ b/docs/build/html/notebook_api_functionality.ipynb @@ -5,7 +5,7 @@ "id": "cb9d00f5-9613-471e-a4bb-6181311bf73b", "metadata": {}, "source": [ - "# Using the API functionality of binarycpython\n", + "# Tutorial: Using the API functionality of binary_c-python\n", "This notebook shows how to use the API functions that interface with binary_c. It usually is better to use wrapper functions that internally use these API functions, because most of the output here is very raw\n", "\n", "Binarycpython uses the Python-C extension framework to interface Python with C. The sourcecode for this is contained in `src/binary_c_python.c`, and the functions are available via `from binarycpython import _binary_c_bindings`.\n", diff --git a/docs/build/html/notebook_custom_logging.html b/docs/build/html/notebook_custom_logging.html index a703be91f..47a303d16 100644 --- a/docs/build/html/notebook_custom_logging.html +++ b/docs/build/html/notebook_custom_logging.html @@ -7,7 +7,7 @@ <meta name="viewport" content="width=device-width, initial-scale=1.0"> - <title>Using custom logging routines with binarycpython — binary_c-python documentation</title> + <title>Tutorial: Using custom logging routines with binary_c-python — binary_c-python documentation</title> @@ -39,8 +39,8 @@ <link rel="index" title="Index" href="genindex.html" /> <link rel="search" title="Search" href="search.html" /> - <link rel="next" title="Running populations with binarycpython" href="notebook_population.html" /> - <link rel="prev" title="Running individual systems with binarycpython" href="notebook_individual_systems.html" /> + <link rel="next" title="Tutorial: Running populations with binary_c-python" href="notebook_population.html" /> + <link rel="prev" title="Tutorial: Running individual systems with binary_c-python" href="notebook_individual_systems.html" /> </head> <body class="wy-body-for-nav"> @@ -90,8 +90,8 @@ <li class="toctree-l1"><a class="reference internal" href="readme_link.html">Python module for binary_c</a></li> <li class="toctree-l1"><a class="reference internal" href="modules.html">Binarycpython code</a></li> <li class="toctree-l1 current"><a class="reference internal" href="example_notebooks.html">Example notebooks</a><ul class="current"> -<li class="toctree-l2"><a class="reference internal" href="notebook_individual_systems.html">Running individual systems with binarycpython</a></li> -<li class="toctree-l2 current"><a class="current reference internal" href="#">Using custom logging routines with binarycpython</a><ul> +<li class="toctree-l2"><a class="reference internal" href="notebook_individual_systems.html">Tutorial: Running individual systems with binary_c-python</a></li> +<li class="toctree-l2 current"><a class="current reference internal" href="#">Tutorial: Using custom logging routines with binary_c-python</a><ul> <li class="toctree-l3"><a class="reference internal" href="#Usage">Usage</a><ul> <li class="toctree-l4"><a class="reference internal" href="#Using-custom-logging-with-the-population-object">Using custom logging with the population object</a></li> <li class="toctree-l4"><a class="reference internal" href="#Using-custom-logging-when-running-directly-from-the-API">Using custom logging when running directly from the API</a></li> @@ -104,12 +104,11 @@ </li> </ul> </li> -<li class="toctree-l2"><a class="reference internal" href="notebook_population.html">Running populations with binarycpython</a></li> -<li class="toctree-l2"><a class="reference internal" href="notebook_extra_features.html">Extra features and functionality of binarycpython</a></li> -<li class="toctree-l2"><a class="reference internal" href="notebook_api_functionality.html">Using the API functionality of binarycpython</a></li> +<li class="toctree-l2"><a class="reference internal" href="notebook_population.html">Tutorial: Running populations with binary_c-python</a></li> +<li class="toctree-l2"><a class="reference internal" href="notebook_extra_features.html">Tutorial: Extra features and functionality of binary_c-python</a></li> +<li class="toctree-l2"><a class="reference internal" href="notebook_api_functionality.html">Tutorial: Using the API functionality of binary_c-python</a></li> <li class="toctree-l2"><a class="reference internal" href="notebook_luminosity_function_single.html">Example use case: Zero-age stellar luminosity function</a></li> -<li class="toctree-l2"><a class="reference internal" href="notebook_luminosity_function_single.html#A-better-sampled-grid">A better-sampled grid</a></li> -<li class="toctree-l2"><a class="reference internal" href="notebook_luminosity_function_binaries.html">Zero-age stellar luminosity function in binaries</a></li> +<li class="toctree-l2"><a class="reference internal" href="notebook_luminosity_function_binaries.html">Example use case: Zero-age stellar luminosity function in binaries</a></li> </ul> </li> <li class="toctree-l1"><a class="reference internal" href="binary_c_parameters.html">Binary_c parameters</a></li> @@ -164,7 +163,7 @@ <li><a href="example_notebooks.html">Example notebooks</a> »</li> - <li>Using custom logging routines with binarycpython</li> + <li>Tutorial: Using custom logging routines with binary_c-python</li> <li class="wy-breadcrumbs-aside"> @@ -453,8 +452,8 @@ div.rendered_html tbody tr:hover { text-align: unset; } </style> -<div class="section" id="Using-custom-logging-routines-with-binarycpython"> -<h1>Using custom logging routines with binarycpython<a class="headerlink" href="#Using-custom-logging-routines-with-binarycpython" title="Permalink to this headline">¶</a></h1> +<div class="section" id="Tutorial:-Using-custom-logging-routines-with-binary_c-python"> +<h1>Tutorial: Using custom logging routines with binary_c-python<a class="headerlink" href="#Tutorial:-Using-custom-logging-routines-with-binary_c-python" title="Permalink to this headline">¶</a></h1> <p>In this notebook you’ll learn how to use the custom logging functionality</p> <div class="nbinput nblast docutils container"> <div class="prompt highlight-none notranslate"><div class="highlight"><pre><span></span>[1]: @@ -857,10 +856,10 @@ EXAMPLE_SN 1.050651207308e+01 1.59452 9.34213 20 12 13 5 1 6.55458 4 <div class="rst-footer-buttons" role="navigation" aria-label="footer navigation"> - <a href="notebook_population.html" class="btn btn-neutral float-right" title="Running populations with binarycpython" accesskey="n" rel="next">Next <span class="fa fa-arrow-circle-right"></span></a> + <a href="notebook_population.html" class="btn btn-neutral float-right" title="Tutorial: Running populations with binary_c-python" accesskey="n" rel="next">Next <span class="fa fa-arrow-circle-right"></span></a> - <a href="notebook_individual_systems.html" class="btn btn-neutral float-left" title="Running individual systems with binarycpython" accesskey="p" rel="prev"><span class="fa fa-arrow-circle-left"></span> Previous</a> + <a href="notebook_individual_systems.html" class="btn btn-neutral float-left" title="Tutorial: Running individual systems with binary_c-python" accesskey="p" rel="prev"><span class="fa fa-arrow-circle-left"></span> Previous</a> </div> @@ -883,7 +882,7 @@ EXAMPLE_SN 1.050651207308e+01 1.59452 9.34213 20 12 13 5 1 6.55458 4 provided by <a href="https://readthedocs.org">Read the Docs</a>. <br><br> -Generated on binarycpython git branch: master git revision 9af65282f7f847c8638c85a39f03c803b635e442 url: <a href="https://gitlab.eps.surrey.ac.uk/ri0005/binary_c-python/-/tree/master">git url</a>. +Generated on binarycpython git branch: master git revision 0e871bc098f163940c2256300af798a29ad36e29 url: <a href="https://gitlab.eps.surrey.ac.uk/ri0005/binary_c-python/-/tree/master">git url</a>. <br><br> Using binary_c with bit branch newmaster: git revision: "6185:20210910:1621c23a5" url: <a href="https://gitlab.eps.surrey.ac.uk/ri0005/binary_c/-/tree/newmaster">git url</a>. diff --git a/docs/build/html/notebook_custom_logging.ipynb b/docs/build/html/notebook_custom_logging.ipynb index 84e41e6bc..bfdf2a5c8 100644 --- a/docs/build/html/notebook_custom_logging.ipynb +++ b/docs/build/html/notebook_custom_logging.ipynb @@ -5,7 +5,7 @@ "id": "879b596b-d70c-4f90-b668-563b4ad93ffc", "metadata": {}, "source": [ - "# Using custom logging routines with binarycpython\n", + "# Tutorial: Using custom logging routines with binary_c-python\n", "In this notebook you'll learn how to use the custom logging functionality" ] }, diff --git a/docs/build/html/notebook_extra_features.html b/docs/build/html/notebook_extra_features.html index 8c058cd55..5edb46523 100644 --- a/docs/build/html/notebook_extra_features.html +++ b/docs/build/html/notebook_extra_features.html @@ -7,7 +7,7 @@ <meta name="viewport" content="width=device-width, initial-scale=1.0"> - <title>Extra features and functionality of binarycpython — binary_c-python documentation</title> + <title>Tutorial: Extra features and functionality of binary_c-python — binary_c-python documentation</title> @@ -39,8 +39,8 @@ <link rel="index" title="Index" href="genindex.html" /> <link rel="search" title="Search" href="search.html" /> - <link rel="next" title="Using the API functionality of binarycpython" href="notebook_api_functionality.html" /> - <link rel="prev" title="Running populations with binarycpython" href="notebook_population.html" /> + <link rel="next" title="Tutorial: Using the API functionality of binary_c-python" href="notebook_api_functionality.html" /> + <link rel="prev" title="Tutorial: Running populations with binary_c-python" href="notebook_population.html" /> </head> <body class="wy-body-for-nav"> @@ -90,10 +90,10 @@ <li class="toctree-l1"><a class="reference internal" href="readme_link.html">Python module for binary_c</a></li> <li class="toctree-l1"><a class="reference internal" href="modules.html">Binarycpython code</a></li> <li class="toctree-l1 current"><a class="reference internal" href="example_notebooks.html">Example notebooks</a><ul class="current"> -<li class="toctree-l2"><a class="reference internal" href="notebook_individual_systems.html">Running individual systems with binarycpython</a></li> -<li class="toctree-l2"><a class="reference internal" href="notebook_custom_logging.html">Using custom logging routines with binarycpython</a></li> -<li class="toctree-l2"><a class="reference internal" href="notebook_population.html">Running populations with binarycpython</a></li> -<li class="toctree-l2 current"><a class="current reference internal" href="#">Extra features and functionality of binarycpython</a><ul> +<li class="toctree-l2"><a class="reference internal" href="notebook_individual_systems.html">Tutorial: Running individual systems with binary_c-python</a></li> +<li class="toctree-l2"><a class="reference internal" href="notebook_custom_logging.html">Tutorial: Using custom logging routines with binary_c-python</a></li> +<li class="toctree-l2"><a class="reference internal" href="notebook_population.html">Tutorial: Running populations with binary_c-python</a></li> +<li class="toctree-l2 current"><a class="current reference internal" href="#">Tutorial: Extra features and functionality of binary_c-python</a><ul> <li class="toctree-l3"><a class="reference internal" href="#getting-extra-information-about-binary_c-parameters">getting extra information about binary_c parameters</a></li> <li class="toctree-l3"><a class="reference internal" href="#Build-information-of-binary_c">Build information of binary_c</a></li> <li class="toctree-l3"><a class="reference internal" href="#Example-parse-function">Example parse function</a></li> @@ -101,10 +101,9 @@ <li class="toctree-l3"><a class="reference internal" href="#Getting-help">Getting help</a></li> </ul> </li> -<li class="toctree-l2"><a class="reference internal" href="notebook_api_functionality.html">Using the API functionality of binarycpython</a></li> +<li class="toctree-l2"><a class="reference internal" href="notebook_api_functionality.html">Tutorial: Using the API functionality of binary_c-python</a></li> <li class="toctree-l2"><a class="reference internal" href="notebook_luminosity_function_single.html">Example use case: Zero-age stellar luminosity function</a></li> -<li class="toctree-l2"><a class="reference internal" href="notebook_luminosity_function_single.html#A-better-sampled-grid">A better-sampled grid</a></li> -<li class="toctree-l2"><a class="reference internal" href="notebook_luminosity_function_binaries.html">Zero-age stellar luminosity function in binaries</a></li> +<li class="toctree-l2"><a class="reference internal" href="notebook_luminosity_function_binaries.html">Example use case: Zero-age stellar luminosity function in binaries</a></li> </ul> </li> <li class="toctree-l1"><a class="reference internal" href="binary_c_parameters.html">Binary_c parameters</a></li> @@ -159,7 +158,7 @@ <li><a href="example_notebooks.html">Example notebooks</a> »</li> - <li>Extra features and functionality of binarycpython</li> + <li>Tutorial: Extra features and functionality of binary_c-python</li> <li class="wy-breadcrumbs-aside"> @@ -448,8 +447,8 @@ div.rendered_html tbody tr:hover { text-align: unset; } </style> -<div class="section" id="Extra-features-and-functionality-of-binarycpython"> -<h1>Extra features and functionality of binarycpython<a class="headerlink" href="#Extra-features-and-functionality-of-binarycpython" title="Permalink to this headline">¶</a></h1> +<div class="section" id="Tutorial:-Extra-features-and-functionality-of-binary_c-python"> +<h1>Tutorial: Extra features and functionality of binary_c-python<a class="headerlink" href="#Tutorial:-Extra-features-and-functionality-of-binary_c-python" title="Permalink to this headline">¶</a></h1> <p>In this notebook we’ll go over some of the extra features and functionality that was not covered in the other notebooks.</p> <p>Within the module <code class="docutils literal notranslate"><span class="pre">binarycpython.utils.functions</span></code> there are many functions that can be useful when using binarycpython. We can see which functions are in there, again by using the <code class="docutils literal notranslate"><span class="pre">help()</span></code></p> <div class="nbinput nblast docutils container"> @@ -623,10 +622,10 @@ get_defaults(filter_values:bool=False) -> dict <div class="rst-footer-buttons" role="navigation" aria-label="footer navigation"> - <a href="notebook_api_functionality.html" class="btn btn-neutral float-right" title="Using the API functionality of binarycpython" accesskey="n" rel="next">Next <span class="fa fa-arrow-circle-right"></span></a> + <a href="notebook_api_functionality.html" class="btn btn-neutral float-right" title="Tutorial: Using the API functionality of binary_c-python" accesskey="n" rel="next">Next <span class="fa fa-arrow-circle-right"></span></a> - <a href="notebook_population.html" class="btn btn-neutral float-left" title="Running populations with binarycpython" accesskey="p" rel="prev"><span class="fa fa-arrow-circle-left"></span> Previous</a> + <a href="notebook_population.html" class="btn btn-neutral float-left" title="Tutorial: Running populations with binary_c-python" accesskey="p" rel="prev"><span class="fa fa-arrow-circle-left"></span> Previous</a> </div> @@ -649,7 +648,7 @@ get_defaults(filter_values:bool=False) -> dict provided by <a href="https://readthedocs.org">Read the Docs</a>. <br><br> -Generated on binarycpython git branch: master git revision 9af65282f7f847c8638c85a39f03c803b635e442 url: <a href="https://gitlab.eps.surrey.ac.uk/ri0005/binary_c-python/-/tree/master">git url</a>. +Generated on binarycpython git branch: master git revision 0e871bc098f163940c2256300af798a29ad36e29 url: <a href="https://gitlab.eps.surrey.ac.uk/ri0005/binary_c-python/-/tree/master">git url</a>. <br><br> Using binary_c with bit branch newmaster: git revision: "6185:20210910:1621c23a5" url: <a href="https://gitlab.eps.surrey.ac.uk/ri0005/binary_c/-/tree/newmaster">git url</a>. diff --git a/docs/build/html/notebook_extra_features.ipynb b/docs/build/html/notebook_extra_features.ipynb index b1a9ddb03..076b4098e 100644 --- a/docs/build/html/notebook_extra_features.ipynb +++ b/docs/build/html/notebook_extra_features.ipynb @@ -5,7 +5,7 @@ "id": "d5c04b77-f0be-4b33-8c03-c72eb846527c", "metadata": {}, "source": [ - "# Extra features and functionality of binarycpython\n", + "# Tutorial: Extra features and functionality of binary_c-python\n", "In this notebook we'll go over some of the extra features and functionality that was not covered in the other notebooks.\n", "\n", "Within the module `binarycpython.utils.functions` there are many functions that can be useful when using binarycpython. We can see which functions are in there, again by using the `help()`" diff --git a/docs/build/html/notebook_individual_systems.html b/docs/build/html/notebook_individual_systems.html index fc0232238..9d13cae76 100644 --- a/docs/build/html/notebook_individual_systems.html +++ b/docs/build/html/notebook_individual_systems.html @@ -7,7 +7,7 @@ <meta name="viewport" content="width=device-width, initial-scale=1.0"> - <title>Running individual systems with binarycpython — binary_c-python documentation</title> + <title>Tutorial: Running individual systems with binary_c-python — binary_c-python documentation</title> @@ -39,7 +39,7 @@ <link rel="index" title="Index" href="genindex.html" /> <link rel="search" title="Search" href="search.html" /> - <link rel="next" title="Using custom logging routines with binarycpython" href="notebook_custom_logging.html" /> + <link rel="next" title="Tutorial: Using custom logging routines with binary_c-python" href="notebook_custom_logging.html" /> <link rel="prev" title="Example notebooks" href="example_notebooks.html" /> </head> @@ -90,19 +90,18 @@ <li class="toctree-l1"><a class="reference internal" href="readme_link.html">Python module for binary_c</a></li> <li class="toctree-l1"><a class="reference internal" href="modules.html">Binarycpython code</a></li> <li class="toctree-l1 current"><a class="reference internal" href="example_notebooks.html">Example notebooks</a><ul class="current"> -<li class="toctree-l2 current"><a class="current reference internal" href="#">Running individual systems with binarycpython</a><ul> +<li class="toctree-l2 current"><a class="current reference internal" href="#">Tutorial: Running individual systems with binary_c-python</a><ul> <li class="toctree-l3"><a class="reference internal" href="#Single-system-with-run_wrapper">Single system with run_wrapper</a></li> <li class="toctree-l3"><a class="reference internal" href="#Single-system-via-population-object">Single system via population object</a></li> <li class="toctree-l3"><a class="reference internal" href="#Single-system-via-API-functionality">Single system via API functionality</a></li> </ul> </li> -<li class="toctree-l2"><a class="reference internal" href="notebook_custom_logging.html">Using custom logging routines with binarycpython</a></li> -<li class="toctree-l2"><a class="reference internal" href="notebook_population.html">Running populations with binarycpython</a></li> -<li class="toctree-l2"><a class="reference internal" href="notebook_extra_features.html">Extra features and functionality of binarycpython</a></li> -<li class="toctree-l2"><a class="reference internal" href="notebook_api_functionality.html">Using the API functionality of binarycpython</a></li> +<li class="toctree-l2"><a class="reference internal" href="notebook_custom_logging.html">Tutorial: Using custom logging routines with binary_c-python</a></li> +<li class="toctree-l2"><a class="reference internal" href="notebook_population.html">Tutorial: Running populations with binary_c-python</a></li> +<li class="toctree-l2"><a class="reference internal" href="notebook_extra_features.html">Tutorial: Extra features and functionality of binary_c-python</a></li> +<li class="toctree-l2"><a class="reference internal" href="notebook_api_functionality.html">Tutorial: Using the API functionality of binary_c-python</a></li> <li class="toctree-l2"><a class="reference internal" href="notebook_luminosity_function_single.html">Example use case: Zero-age stellar luminosity function</a></li> -<li class="toctree-l2"><a class="reference internal" href="notebook_luminosity_function_single.html#A-better-sampled-grid">A better-sampled grid</a></li> -<li class="toctree-l2"><a class="reference internal" href="notebook_luminosity_function_binaries.html">Zero-age stellar luminosity function in binaries</a></li> +<li class="toctree-l2"><a class="reference internal" href="notebook_luminosity_function_binaries.html">Example use case: Zero-age stellar luminosity function in binaries</a></li> </ul> </li> <li class="toctree-l1"><a class="reference internal" href="binary_c_parameters.html">Binary_c parameters</a></li> @@ -157,7 +156,7 @@ <li><a href="example_notebooks.html">Example notebooks</a> »</li> - <li>Running individual systems with binarycpython</li> + <li>Tutorial: Running individual systems with binary_c-python</li> <li class="wy-breadcrumbs-aside"> @@ -446,8 +445,8 @@ div.rendered_html tbody tr:hover { text-align: unset; } </style> -<div class="section" id="Running-individual-systems-with-binarycpython"> -<h1>Running individual systems with binarycpython<a class="headerlink" href="#Running-individual-systems-with-binarycpython" title="Permalink to this headline">¶</a></h1> +<div class="section" id="Tutorial:-Running-individual-systems-with-binary_c-python"> +<h1>Tutorial: Running individual systems with binary_c-python<a class="headerlink" href="#Tutorial:-Running-individual-systems-with-binary_c-python" title="Permalink to this headline">¶</a></h1> <p>This notebook will show you how to run single systems and analyze their results.</p> <p>It can be useful to have some functions to quickly run a single system to e.g. inspect what evolutionary steps a specific system goes through, to plot the mass loss evolution of a single star, etc.</p> <div class="section" id="Single-system-with-run_wrapper"> @@ -904,7 +903,7 @@ SINGLE_STAR_LIFETIME 15 14.9947 <div class="rst-footer-buttons" role="navigation" aria-label="footer navigation"> - <a href="notebook_custom_logging.html" class="btn btn-neutral float-right" title="Using custom logging routines with binarycpython" accesskey="n" rel="next">Next <span class="fa fa-arrow-circle-right"></span></a> + <a href="notebook_custom_logging.html" class="btn btn-neutral float-right" title="Tutorial: Using custom logging routines with binary_c-python" accesskey="n" rel="next">Next <span class="fa fa-arrow-circle-right"></span></a> <a href="example_notebooks.html" class="btn btn-neutral float-left" title="Example notebooks" accesskey="p" rel="prev"><span class="fa fa-arrow-circle-left"></span> Previous</a> @@ -930,7 +929,7 @@ SINGLE_STAR_LIFETIME 15 14.9947 provided by <a href="https://readthedocs.org">Read the Docs</a>. <br><br> -Generated on binarycpython git branch: master git revision 9af65282f7f847c8638c85a39f03c803b635e442 url: <a href="https://gitlab.eps.surrey.ac.uk/ri0005/binary_c-python/-/tree/master">git url</a>. +Generated on binarycpython git branch: master git revision 0e871bc098f163940c2256300af798a29ad36e29 url: <a href="https://gitlab.eps.surrey.ac.uk/ri0005/binary_c-python/-/tree/master">git url</a>. <br><br> Using binary_c with bit branch newmaster: git revision: "6185:20210910:1621c23a5" url: <a href="https://gitlab.eps.surrey.ac.uk/ri0005/binary_c/-/tree/newmaster">git url</a>. diff --git a/docs/build/html/notebook_individual_systems.ipynb b/docs/build/html/notebook_individual_systems.ipynb index 21d49016f..e6451e762 100644 --- a/docs/build/html/notebook_individual_systems.ipynb +++ b/docs/build/html/notebook_individual_systems.ipynb @@ -5,7 +5,7 @@ "id": "a544d28c-c2e1-4c6a-b55b-8caec440743f", "metadata": {}, "source": [ - "# Running individual systems with binarycpython\n", + "# Tutorial: Running individual systems with binary_c-python\n", "This notebook will show you how to run single systems and analyze their results.\n", "\n", "It can be useful to have some functions to quickly run a single system to e.g. inspect what evolutionary steps a specific system goes through, to plot the mass loss evolution of a single star, etc. " diff --git a/docs/build/html/notebook_luminosity_function_binaries.html b/docs/build/html/notebook_luminosity_function_binaries.html index 850f413f1..505d42726 100644 --- a/docs/build/html/notebook_luminosity_function_binaries.html +++ b/docs/build/html/notebook_luminosity_function_binaries.html @@ -7,7 +7,7 @@ <meta name="viewport" content="width=device-width, initial-scale=1.0"> - <title>Zero-age stellar luminosity function in binaries — binary_c-python documentation</title> + <title>Example use case: Zero-age stellar luminosity function in binaries — binary_c-python documentation</title> @@ -90,14 +90,13 @@ <li class="toctree-l1"><a class="reference internal" href="readme_link.html">Python module for binary_c</a></li> <li class="toctree-l1"><a class="reference internal" href="modules.html">Binarycpython code</a></li> <li class="toctree-l1 current"><a class="reference internal" href="example_notebooks.html">Example notebooks</a><ul class="current"> -<li class="toctree-l2"><a class="reference internal" href="notebook_individual_systems.html">Running individual systems with binarycpython</a></li> -<li class="toctree-l2"><a class="reference internal" href="notebook_custom_logging.html">Using custom logging routines with binarycpython</a></li> -<li class="toctree-l2"><a class="reference internal" href="notebook_population.html">Running populations with binarycpython</a></li> -<li class="toctree-l2"><a class="reference internal" href="notebook_extra_features.html">Extra features and functionality of binarycpython</a></li> -<li class="toctree-l2"><a class="reference internal" href="notebook_api_functionality.html">Using the API functionality of binarycpython</a></li> +<li class="toctree-l2"><a class="reference internal" href="notebook_individual_systems.html">Tutorial: Running individual systems with binary_c-python</a></li> +<li class="toctree-l2"><a class="reference internal" href="notebook_custom_logging.html">Tutorial: Using custom logging routines with binary_c-python</a></li> +<li class="toctree-l2"><a class="reference internal" href="notebook_population.html">Tutorial: Running populations with binary_c-python</a></li> +<li class="toctree-l2"><a class="reference internal" href="notebook_extra_features.html">Tutorial: Extra features and functionality of binary_c-python</a></li> +<li class="toctree-l2"><a class="reference internal" href="notebook_api_functionality.html">Tutorial: Using the API functionality of binary_c-python</a></li> <li class="toctree-l2"><a class="reference internal" href="notebook_luminosity_function_single.html">Example use case: Zero-age stellar luminosity function</a></li> -<li class="toctree-l2"><a class="reference internal" href="notebook_luminosity_function_single.html#A-better-sampled-grid">A better-sampled grid</a></li> -<li class="toctree-l2 current"><a class="current reference internal" href="#">Zero-age stellar luminosity function in binaries</a><ul> +<li class="toctree-l2 current"><a class="current reference internal" href="#">Example use case: Zero-age stellar luminosity function in binaries</a><ul> <li class="toctree-l3"><a class="reference internal" href="#Setting-up-the-Population-object">Setting up the Population object</a></li> <li class="toctree-l3"><a class="reference internal" href="#Adding-grid-variables">Adding grid variables</a></li> <li class="toctree-l3"><a class="reference internal" href="#Setting-logging-and-handling-the-output">Setting logging and handling the output</a></li> @@ -158,7 +157,7 @@ <li><a href="example_notebooks.html">Example notebooks</a> »</li> - <li>Zero-age stellar luminosity function in binaries</li> + <li>Example use case: Zero-age stellar luminosity function in binaries</li> <li class="wy-breadcrumbs-aside"> @@ -447,8 +446,8 @@ div.rendered_html tbody tr:hover { text-align: unset; } </style> -<div class="section" id="Zero-age-stellar-luminosity-function-in-binaries"> -<h1>Zero-age stellar luminosity function in binaries<a class="headerlink" href="#Zero-age-stellar-luminosity-function-in-binaries" title="Permalink to this headline">¶</a></h1> +<div class="section" id="Example-use-case:-Zero-age-stellar-luminosity-function-in-binaries"> +<h1>Example use case: Zero-age stellar luminosity function in binaries<a class="headerlink" href="#Example-use-case:-Zero-age-stellar-luminosity-function-in-binaries" title="Permalink to this headline">¶</a></h1> <p>In this notebook we compute the luminosity function of the zero-age main-sequence by running a population of binary stars using binary_c.</p> <p>Before you go through this notebook, you should look at notebook_luminosity_function.ipynb which is for the - conceptually more simple - single stars.</p> <p>We start by loading in some standard Python modules and the binary_c module.</p> @@ -1170,15 +1169,6 @@ Done population run! <img alt="_images/notebook_luminosity_function_binaries_20_1.png" src="_images/notebook_luminosity_function_binaries_20_1.png" /> </div> </div> -<div class="nbinput nblast docutils container"> -<div class="prompt highlight-none notranslate"><div class="highlight"><pre><span></span>[ ]: -</pre></div> -</div> -<div class="input_area highlight-ipython3 notranslate"><div class="highlight"><pre> -<span></span> -</pre></div> -</div> -</div> </div> </div> @@ -1216,7 +1206,7 @@ Done population run! provided by <a href="https://readthedocs.org">Read the Docs</a>. <br><br> -Generated on binarycpython git branch: master git revision 9af65282f7f847c8638c85a39f03c803b635e442 url: <a href="https://gitlab.eps.surrey.ac.uk/ri0005/binary_c-python/-/tree/master">git url</a>. +Generated on binarycpython git branch: master git revision 0e871bc098f163940c2256300af798a29ad36e29 url: <a href="https://gitlab.eps.surrey.ac.uk/ri0005/binary_c-python/-/tree/master">git url</a>. <br><br> Using binary_c with bit branch newmaster: git revision: "6185:20210910:1621c23a5" url: <a href="https://gitlab.eps.surrey.ac.uk/ri0005/binary_c/-/tree/newmaster">git url</a>. diff --git a/docs/build/html/notebook_luminosity_function_binaries.ipynb b/docs/build/html/notebook_luminosity_function_binaries.ipynb index fb64dbcc9..47a96d093 100644 --- a/docs/build/html/notebook_luminosity_function_binaries.ipynb +++ b/docs/build/html/notebook_luminosity_function_binaries.ipynb @@ -5,7 +5,7 @@ "id": "bbbaafbb-fd7d-4b73-a970-93506ba35d71", "metadata": {}, "source": [ - "# Zero-age stellar luminosity function in binaries\n", + "# Example use case: Zero-age stellar luminosity function in binaries\n", "\n", "In this notebook we compute the luminosity function of the zero-age main-sequence by running a population of binary stars using binary_c. \n", "\n", @@ -805,14 +805,6 @@ "p.set_ylabel(\"Number of stars\")\n", "p.set(yscale=\"log\")" ] - }, - { - "cell_type": "code", - "execution_count": null, - "id": "e7541ebf-fe9a-4fb0-a88e-bb318d06f9eb", - "metadata": {}, - "outputs": [], - "source": [] } ], "metadata": { diff --git a/docs/build/html/notebook_luminosity_function_single.html b/docs/build/html/notebook_luminosity_function_single.html index e2821b3be..a8b6ec93a 100644 --- a/docs/build/html/notebook_luminosity_function_single.html +++ b/docs/build/html/notebook_luminosity_function_single.html @@ -39,8 +39,8 @@ <link rel="index" title="Index" href="genindex.html" /> <link rel="search" title="Search" href="search.html" /> - <link rel="next" title="Zero-age stellar luminosity function in binaries" href="notebook_luminosity_function_binaries.html" /> - <link rel="prev" title="Using the API functionality of binarycpython" href="notebook_api_functionality.html" /> + <link rel="next" title="Example use case: Zero-age stellar luminosity function in binaries" href="notebook_luminosity_function_binaries.html" /> + <link rel="prev" title="Tutorial: Using the API functionality of binary_c-python" href="notebook_api_functionality.html" /> </head> <body class="wy-body-for-nav"> @@ -90,21 +90,21 @@ <li class="toctree-l1"><a class="reference internal" href="readme_link.html">Python module for binary_c</a></li> <li class="toctree-l1"><a class="reference internal" href="modules.html">Binarycpython code</a></li> <li class="toctree-l1 current"><a class="reference internal" href="example_notebooks.html">Example notebooks</a><ul class="current"> -<li class="toctree-l2"><a class="reference internal" href="notebook_individual_systems.html">Running individual systems with binarycpython</a></li> -<li class="toctree-l2"><a class="reference internal" href="notebook_custom_logging.html">Using custom logging routines with binarycpython</a></li> -<li class="toctree-l2"><a class="reference internal" href="notebook_population.html">Running populations with binarycpython</a></li> -<li class="toctree-l2"><a class="reference internal" href="notebook_extra_features.html">Extra features and functionality of binarycpython</a></li> -<li class="toctree-l2"><a class="reference internal" href="notebook_api_functionality.html">Using the API functionality of binarycpython</a></li> +<li class="toctree-l2"><a class="reference internal" href="notebook_individual_systems.html">Tutorial: Running individual systems with binary_c-python</a></li> +<li class="toctree-l2"><a class="reference internal" href="notebook_custom_logging.html">Tutorial: Using custom logging routines with binary_c-python</a></li> +<li class="toctree-l2"><a class="reference internal" href="notebook_population.html">Tutorial: Running populations with binary_c-python</a></li> +<li class="toctree-l2"><a class="reference internal" href="notebook_extra_features.html">Tutorial: Extra features and functionality of binary_c-python</a></li> +<li class="toctree-l2"><a class="reference internal" href="notebook_api_functionality.html">Tutorial: Using the API functionality of binary_c-python</a></li> <li class="toctree-l2 current"><a class="current reference internal" href="#">Example use case: Zero-age stellar luminosity function</a><ul> <li class="toctree-l3"><a class="reference internal" href="#Setting-up-the-Population-object">Setting up the Population object</a></li> <li class="toctree-l3"><a class="reference internal" href="#Adding-grid-variables">Adding grid variables</a></li> <li class="toctree-l3"><a class="reference internal" href="#Setting-logging-and-handling-the-output">Setting logging and handling the output</a></li> <li class="toctree-l3"><a class="reference internal" href="#Evolving-the-grid">Evolving the grid</a></li> <li class="toctree-l3"><a class="reference internal" href="#ZAMS-Luminosity-distribution-with-the-initial-mass-function">ZAMS Luminosity distribution with the initial mass function</a></li> +<li class="toctree-l3"><a class="reference internal" href="#A-better-sampled-grid">A better-sampled grid</a></li> </ul> </li> -<li class="toctree-l2"><a class="reference internal" href="#A-better-sampled-grid">A better-sampled grid</a></li> -<li class="toctree-l2"><a class="reference internal" href="notebook_luminosity_function_binaries.html">Zero-age stellar luminosity function in binaries</a></li> +<li class="toctree-l2"><a class="reference internal" href="notebook_luminosity_function_binaries.html">Example use case: Zero-age stellar luminosity function in binaries</a></li> </ul> </li> <li class="toctree-l1"><a class="reference internal" href="binary_c_parameters.html">Binary_c parameters</a></li> @@ -859,16 +859,15 @@ OrderedDict([('luminosity distribution', OrderedDict([(2.25, 0.0164166), <div class="prompt empty docutils container"> </div> <div class="output_area docutils container"> -<img alt="_images/notebook_luminosity_function_single_26_1.png" src="_images/notebook_luminosity_function_single_26_1.png" /> +<img alt="_images/notebook_luminosity_function_single_25_1.png" src="_images/notebook_luminosity_function_single_25_1.png" /> </div> </div> <p>This distribution is peaked at low luminosity, as one expects from observations, but the resolution is clearly not great because it’s not smooth - it’s spiky!</p> <p>If you noticed above, the total probability of the grid was about 0.2. Given that the total probability of a probability distribution function should be 1.0, this shows that our sampling is (very) poor.</p> <p>We could simply increase the resolution to compensate, but this is very CPU intensive and a complete waste of time and resources. Instead, let’s try sampling the masses of the stars in a smarter way.</p> </div> -</div> <div class="section" id="A-better-sampled-grid"> -<h1>A better-sampled grid<a class="headerlink" href="#A-better-sampled-grid" title="Permalink to this headline">¶</a></h1> +<h2>A better-sampled grid<a class="headerlink" href="#A-better-sampled-grid" title="Permalink to this headline">¶</a></h2> <p>The IMF has many more low-mass stars than high-mass stars. So, instead of sampling M1 linearly, we can sample it in log space.</p> <p>To do this we first rename the mass grid variable so that it is clear we are working in (natural) logarithmic phase space.</p> <div class="nbinput nblast docutils container"> @@ -962,12 +961,13 @@ OrderedDict([('luminosity distribution', OrderedDict([(0.25, 0.0212294), <div class="prompt empty docutils container"> </div> <div class="output_area docutils container"> -<img alt="_images/notebook_luminosity_function_single_34_0.png" src="_images/notebook_luminosity_function_single_34_0.png" /> +<img alt="_images/notebook_luminosity_function_single_33_0.png" src="_images/notebook_luminosity_function_single_33_0.png" /> </div> </div> <p>Most stars are low mass red dwarfs, with small luminosities. Without the IMF weighting, our model population would have got this completely wrong!</p> <p>As you increase the resolution, you will see this curve becomes even smoother. The wiggles in the curve are (usually) sampling artefacts because the curve should monotonically brighten above about log(<em>L</em>/L☉)=-2.</p> <p>Remember you can play with the binwidth too. If you want a very accurate distribution you need a narrow binwidth, but then you’ll also need high resolution (lots of stars) so lots of CPU time, hence cost, CO2, etc.</p> +</div> </div> @@ -978,10 +978,10 @@ OrderedDict([('luminosity distribution', OrderedDict([(0.25, 0.0212294), <div class="rst-footer-buttons" role="navigation" aria-label="footer navigation"> - <a href="notebook_luminosity_function_binaries.html" class="btn btn-neutral float-right" title="Zero-age stellar luminosity function in binaries" accesskey="n" rel="next">Next <span class="fa fa-arrow-circle-right"></span></a> + <a href="notebook_luminosity_function_binaries.html" class="btn btn-neutral float-right" title="Example use case: Zero-age stellar luminosity function in binaries" accesskey="n" rel="next">Next <span class="fa fa-arrow-circle-right"></span></a> - <a href="notebook_api_functionality.html" class="btn btn-neutral float-left" title="Using the API functionality of binarycpython" accesskey="p" rel="prev"><span class="fa fa-arrow-circle-left"></span> Previous</a> + <a href="notebook_api_functionality.html" class="btn btn-neutral float-left" title="Tutorial: Using the API functionality of binary_c-python" accesskey="p" rel="prev"><span class="fa fa-arrow-circle-left"></span> Previous</a> </div> @@ -1004,7 +1004,7 @@ OrderedDict([('luminosity distribution', OrderedDict([(0.25, 0.0212294), provided by <a href="https://readthedocs.org">Read the Docs</a>. <br><br> -Generated on binarycpython git branch: master git revision 9af65282f7f847c8638c85a39f03c803b635e442 url: <a href="https://gitlab.eps.surrey.ac.uk/ri0005/binary_c-python/-/tree/master">git url</a>. +Generated on binarycpython git branch: master git revision 0e871bc098f163940c2256300af798a29ad36e29 url: <a href="https://gitlab.eps.surrey.ac.uk/ri0005/binary_c-python/-/tree/master">git url</a>. <br><br> Using binary_c with bit branch newmaster: git revision: "6185:20210910:1621c23a5" url: <a href="https://gitlab.eps.surrey.ac.uk/ri0005/binary_c/-/tree/newmaster">git url</a>. diff --git a/docs/build/html/notebook_luminosity_function_single.ipynb b/docs/build/html/notebook_luminosity_function_single.ipynb index fb971b34a..5980adf6d 100644 --- a/docs/build/html/notebook_luminosity_function_single.ipynb +++ b/docs/build/html/notebook_luminosity_function_single.ipynb @@ -430,14 +430,6 @@ "Does this look like a reasonable stellar luminosity function to you? The implication is that the most likely stellar luminosity is 10<sup>5.8</sup> L<sub>☉</sub>! Clearly, this is not very realistic... let's see what went wrong." ] }, - { - "cell_type": "markdown", - "id": "44586e42-b7cb-4a55-be0a-330b98b20de4", - "metadata": {}, - "source": [ - "## " - ] - }, { "cell_type": "markdown", "id": "e32c3bbf-390f-45da-ad9c-cc3e7c9449dc", @@ -554,9 +546,11 @@ { "cell_type": "markdown", "id": "673031c9-7d80-45d4-b209-301c127d3edf", - "metadata": {}, + "metadata": { + "tags": [] + }, "source": [ - "# A better-sampled grid\n", + "## A better-sampled grid\n", "\n", "The IMF has many more low-mass stars than high-mass stars. So, instead of sampling M1 linearly, we can sample it in log space. \n", "\n", diff --git a/docs/build/html/notebook_population.html b/docs/build/html/notebook_population.html index 0b0937d50..c45b33a56 100644 --- a/docs/build/html/notebook_population.html +++ b/docs/build/html/notebook_population.html @@ -7,7 +7,7 @@ <meta name="viewport" content="width=device-width, initial-scale=1.0"> - <title>Running populations with binarycpython — binary_c-python documentation</title> + <title>Tutorial: Running populations with binary_c-python — binary_c-python documentation</title> @@ -39,8 +39,8 @@ <link rel="index" title="Index" href="genindex.html" /> <link rel="search" title="Search" href="search.html" /> - <link rel="next" title="Extra features and functionality of binarycpython" href="notebook_extra_features.html" /> - <link rel="prev" title="Using custom logging routines with binarycpython" href="notebook_custom_logging.html" /> + <link rel="next" title="Tutorial: Extra features and functionality of binary_c-python" href="notebook_extra_features.html" /> + <link rel="prev" title="Tutorial: Using custom logging routines with binary_c-python" href="notebook_custom_logging.html" /> </head> <body class="wy-body-for-nav"> @@ -90,9 +90,9 @@ <li class="toctree-l1"><a class="reference internal" href="readme_link.html">Python module for binary_c</a></li> <li class="toctree-l1"><a class="reference internal" href="modules.html">Binarycpython code</a></li> <li class="toctree-l1 current"><a class="reference internal" href="example_notebooks.html">Example notebooks</a><ul class="current"> -<li class="toctree-l2"><a class="reference internal" href="notebook_individual_systems.html">Running individual systems with binarycpython</a></li> -<li class="toctree-l2"><a class="reference internal" href="notebook_custom_logging.html">Using custom logging routines with binarycpython</a></li> -<li class="toctree-l2 current"><a class="current reference internal" href="#">Running populations with binarycpython</a><ul> +<li class="toctree-l2"><a class="reference internal" href="notebook_individual_systems.html">Tutorial: Running individual systems with binary_c-python</a></li> +<li class="toctree-l2"><a class="reference internal" href="notebook_custom_logging.html">Tutorial: Using custom logging routines with binary_c-python</a></li> +<li class="toctree-l2 current"><a class="current reference internal" href="#">Tutorial: Running populations with binary_c-python</a><ul> <li class="toctree-l3"><a class="reference internal" href="#Setting-up-the-Population-object">Setting up the Population object</a></li> <li class="toctree-l3"><a class="reference internal" href="#Adding-grid-variables">Adding grid variables</a></li> <li class="toctree-l3"><a class="reference internal" href="#Setting-logging-and-handling-the-output">Setting logging and handling the output</a></li> @@ -101,11 +101,10 @@ <li class="toctree-l3"><a class="reference internal" href="#Full-examples-of-population-scripts">Full examples of population scripts</a></li> </ul> </li> -<li class="toctree-l2"><a class="reference internal" href="notebook_extra_features.html">Extra features and functionality of binarycpython</a></li> -<li class="toctree-l2"><a class="reference internal" href="notebook_api_functionality.html">Using the API functionality of binarycpython</a></li> +<li class="toctree-l2"><a class="reference internal" href="notebook_extra_features.html">Tutorial: Extra features and functionality of binary_c-python</a></li> +<li class="toctree-l2"><a class="reference internal" href="notebook_api_functionality.html">Tutorial: Using the API functionality of binary_c-python</a></li> <li class="toctree-l2"><a class="reference internal" href="notebook_luminosity_function_single.html">Example use case: Zero-age stellar luminosity function</a></li> -<li class="toctree-l2"><a class="reference internal" href="notebook_luminosity_function_single.html#A-better-sampled-grid">A better-sampled grid</a></li> -<li class="toctree-l2"><a class="reference internal" href="notebook_luminosity_function_binaries.html">Zero-age stellar luminosity function in binaries</a></li> +<li class="toctree-l2"><a class="reference internal" href="notebook_luminosity_function_binaries.html">Example use case: Zero-age stellar luminosity function in binaries</a></li> </ul> </li> <li class="toctree-l1"><a class="reference internal" href="binary_c_parameters.html">Binary_c parameters</a></li> @@ -160,7 +159,7 @@ <li><a href="example_notebooks.html">Example notebooks</a> »</li> - <li>Running populations with binarycpython</li> + <li>Tutorial: Running populations with binary_c-python</li> <li class="wy-breadcrumbs-aside"> @@ -449,8 +448,8 @@ div.rendered_html tbody tr:hover { text-align: unset; } </style> -<div class="section" id="Running-populations-with-binarycpython"> -<h1>Running populations with binarycpython<a class="headerlink" href="#Running-populations-with-binarycpython" title="Permalink to this headline">¶</a></h1> +<div class="section" id="Tutorial:-Running-populations-with-binary_c-python"> +<h1>Tutorial: Running populations with binary_c-python<a class="headerlink" href="#Tutorial:-Running-populations-with-binary_c-python" title="Permalink to this headline">¶</a></h1> <p>This notebook will show you how to evolve a population of stars</p> <p>Much of the code in the binarycpython package is written to evolve a population of stars through the Population object, rather than running a single system. Let’s go through the functionality of this object step by step and set up some example populations.</p> <p>At the bottom of this notebook there are some complete example scripts</p> @@ -1444,10 +1443,10 @@ time mass_1 zams_mass_1 mass_2 zams_mass_2 stellar_type_1 prev_stellar_type_1 st <div class="rst-footer-buttons" role="navigation" aria-label="footer navigation"> - <a href="notebook_extra_features.html" class="btn btn-neutral float-right" title="Extra features and functionality of binarycpython" accesskey="n" rel="next">Next <span class="fa fa-arrow-circle-right"></span></a> + <a href="notebook_extra_features.html" class="btn btn-neutral float-right" title="Tutorial: Extra features and functionality of binary_c-python" accesskey="n" rel="next">Next <span class="fa fa-arrow-circle-right"></span></a> - <a href="notebook_custom_logging.html" class="btn btn-neutral float-left" title="Using custom logging routines with binarycpython" accesskey="p" rel="prev"><span class="fa fa-arrow-circle-left"></span> Previous</a> + <a href="notebook_custom_logging.html" class="btn btn-neutral float-left" title="Tutorial: Using custom logging routines with binary_c-python" accesskey="p" rel="prev"><span class="fa fa-arrow-circle-left"></span> Previous</a> </div> @@ -1470,7 +1469,7 @@ time mass_1 zams_mass_1 mass_2 zams_mass_2 stellar_type_1 prev_stellar_type_1 st provided by <a href="https://readthedocs.org">Read the Docs</a>. <br><br> -Generated on binarycpython git branch: master git revision 9af65282f7f847c8638c85a39f03c803b635e442 url: <a href="https://gitlab.eps.surrey.ac.uk/ri0005/binary_c-python/-/tree/master">git url</a>. +Generated on binarycpython git branch: master git revision 0e871bc098f163940c2256300af798a29ad36e29 url: <a href="https://gitlab.eps.surrey.ac.uk/ri0005/binary_c-python/-/tree/master">git url</a>. <br><br> Using binary_c with bit branch newmaster: git revision: "6185:20210910:1621c23a5" url: <a href="https://gitlab.eps.surrey.ac.uk/ri0005/binary_c/-/tree/newmaster">git url</a>. diff --git a/docs/build/html/notebook_population.ipynb b/docs/build/html/notebook_population.ipynb index f6f27ee43..fff337533 100644 --- a/docs/build/html/notebook_population.ipynb +++ b/docs/build/html/notebook_population.ipynb @@ -7,7 +7,7 @@ "tags": [] }, "source": [ - "# Running populations with binarycpython\n", + "# Tutorial: Running populations with binary_c-python\n", "This notebook will show you how to evolve a population of stars\n", "\n", "Much of the code in the binarycpython package is written to evolve a population of stars through the Population object, rather than running a single system. 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18,19,23],young:[0,11],your:[7,9,12,14,19],yourself:[15,16,17,18],yscale:[15,16],zahn:[0,11],zam:[0,2,3,11,15,20,23],zams_collis:23,zams_mass:[15,16,17],zams_mass_1:17,zams_mass_2:17,zero:[0,1,3,4,7,9,11],zero_ag:[12,14,15,16,17],zero_age_main_sequence_star:[15,16],zero_age_main_sequence_starn:15,zero_prob_stars_skip:[15,16,17],zone:[0,11],zoom:[0,11],zoomfac_multiplier_decreas:[0,11],zoomfac_multiplier_increas:[0,11],zsolar:2,zytkow:[0,11]},titles:["Binary_c parameters","custom_logging_functions module","distribution_functions module","Example notebooks","functions module","grid_class module","Grid options and descriptions","Population grid code options","hpc_functions module","Welcome to binary_c-python\u2019s documentation!","Binarycpython code","Tutorial: Using the API functionality of binary_c-python","Tutorial: Using custom logging routines with binary_c-python","Tutorial: Extra features and functionality of binary_c-python","Tutorial: Running individual systems with binary_c-python","Example use case: Zero-age stellar luminosity function in binaries","Example use case: Zero-age stellar luminosity function","Tutorial: Running populations with binary_c-python","plot_functions module","Python module for binary_c","run_system_wrapper module","spacing_functions module","stellar_types module","useful_funcs module"],titleterms:{"case":[15,16],"function":[4,11,13,14,15,16,17],"public":7,Adding:[15,16,17],Using:[11,12],about:13,after:[9,19],age:[15,16],algorithm:0,api:[11,12,14],better:16,binari:[0,15],binary_c:[0,9,11,12,13,14,17,19],binarycpython:10,build:[9,13,19],code:[7,10],compact:12,custom:12,custom_logging_funct:1,descript:6,dictionari:13,directli:12,distribut:16,distribution_funct:2,document:[9,19],environ:[9,19],evolut:12,evolv:[15,16,17],exampl:[3,9,11,12,13,15,16,17,19],extra:13,faq:[9,19],featur:13,free:11,from:[9,11,12,19],full:17,get:[11,13],grid:[6,7,15,16,17],grid_class:5,handl:[15,16,17],help:13,hpc_function:8,indic:9,individu:14,inform:[11,13],initi:16,input:0,instal:[9,19],instruct:[9,19],issu:[9,19],log:[12,15,16,17],luminos:[15,16],mass:[12,16],misc:0,modif:13,modul:[1,2,4,5,8,9,18,19,20,21,22,23],moe:7,note:[9,19],notebook:3,noteworthi:17,nucsyn:0,object:[12,14,15,16,17],option:[6,7],output:[0,15,16,17],paramet:[0,13],pars:13,pip:[9,19],plot_funct:18,popul:[7,12,14,15,16,17],privat:7,python:[9,11,12,13,14,17,19],requir:[9,19],routin:12,run:[12,14,17],run_system_wrapp:20,run_wrapp:14,sampl:16,sampler:7,script:17,section:0,set:[11,15,16,17],singl:14,sourc:[9,19],spacing_funct:21,star:0,stefano:7,stellar:[15,16],stellar_typ:22,store:11,string:12,supernova:12,system:14,tabl:9,tutori:[11,12,13,14,17],usag:[9,11,12,19],use:[15,16],useful_func:23,using:11,variabl:[9,15,16,17,19],via:[9,14,19],welcom:9,when:12,zam:16,zero:[15,16]}}) \ No newline at end of file diff --git a/docs/build/html/spacing_functions.html b/docs/build/html/spacing_functions.html index 4af76623c..1033359ea 100644 --- a/docs/build/html/spacing_functions.html +++ b/docs/build/html/spacing_functions.html @@ -262,7 +262,7 @@ provided by <a href="https://readthedocs.org">Read the Docs</a>. <br><br> -Generated on binarycpython git branch: master git revision 9af65282f7f847c8638c85a39f03c803b635e442 url: <a href="https://gitlab.eps.surrey.ac.uk/ri0005/binary_c-python/-/tree/master">git url</a>. +Generated on binarycpython git branch: master git revision 0e871bc098f163940c2256300af798a29ad36e29 url: <a href="https://gitlab.eps.surrey.ac.uk/ri0005/binary_c-python/-/tree/master">git url</a>. <br><br> Using binary_c with bit branch newmaster: git revision: "6185:20210910:1621c23a5" url: <a href="https://gitlab.eps.surrey.ac.uk/ri0005/binary_c/-/tree/newmaster">git url</a>. diff --git a/docs/build/html/stellar_types.html b/docs/build/html/stellar_types.html index 0bf1079a8..1418be289 100644 --- a/docs/build/html/stellar_types.html +++ b/docs/build/html/stellar_types.html @@ -243,7 +243,7 @@ provided by <a href="https://readthedocs.org">Read the Docs</a>. <br><br> -Generated on binarycpython git branch: master git revision 9af65282f7f847c8638c85a39f03c803b635e442 url: <a href="https://gitlab.eps.surrey.ac.uk/ri0005/binary_c-python/-/tree/master">git url</a>. +Generated on binarycpython git branch: master git revision 0e871bc098f163940c2256300af798a29ad36e29 url: <a href="https://gitlab.eps.surrey.ac.uk/ri0005/binary_c-python/-/tree/master">git url</a>. <br><br> Using binary_c with bit branch newmaster: git revision: "6185:20210910:1621c23a5" url: <a href="https://gitlab.eps.surrey.ac.uk/ri0005/binary_c/-/tree/newmaster">git url</a>. diff --git a/docs/build/html/useful_funcs.html b/docs/build/html/useful_funcs.html index 8c504966e..6a1794092 100644 --- a/docs/build/html/useful_funcs.html +++ b/docs/build/html/useful_funcs.html @@ -441,7 +441,7 @@ determine if two stars collide on the ZAMS</p> provided by <a href="https://readthedocs.org">Read the Docs</a>. <br><br> -Generated on binarycpython git branch: master git revision 9af65282f7f847c8638c85a39f03c803b635e442 url: <a href="https://gitlab.eps.surrey.ac.uk/ri0005/binary_c-python/-/tree/master">git url</a>. +Generated on binarycpython git branch: master git revision 0e871bc098f163940c2256300af798a29ad36e29 url: <a href="https://gitlab.eps.surrey.ac.uk/ri0005/binary_c-python/-/tree/master">git url</a>. <br><br> Using binary_c with bit branch newmaster: git revision: "6185:20210910:1621c23a5" url: <a href="https://gitlab.eps.surrey.ac.uk/ri0005/binary_c/-/tree/newmaster">git url</a>. diff --git a/docs/source/_templates/footer.html b/docs/source/_templates/footer.html index e9fe70c02..308df1118 100644 --- a/docs/source/_templates/footer.html +++ b/docs/source/_templates/footer.html @@ -2,7 +2,7 @@ {%- block extrafooter %} <br><br> -Generated on binarycpython git branch: master git revision 9af65282f7f847c8638c85a39f03c803b635e442 url: <a href="https://gitlab.eps.surrey.ac.uk/ri0005/binary_c-python/-/tree/master">git url</a>. +Generated on binarycpython git branch: master git revision 0e871bc098f163940c2256300af798a29ad36e29 url: <a href="https://gitlab.eps.surrey.ac.uk/ri0005/binary_c-python/-/tree/master">git url</a>. <br><br> Using binary_c with bit branch newmaster: git revision: "6185:20210910:1621c23a5" url: <a href="https://gitlab.eps.surrey.ac.uk/ri0005/binary_c/-/tree/newmaster">git url</a>. diff --git a/docs/source/notebook_api_functionality.ipynb b/docs/source/notebook_api_functionality.ipynb index 8d454880c..020d2dc7c 100644 --- a/docs/source/notebook_api_functionality.ipynb +++ b/docs/source/notebook_api_functionality.ipynb @@ -5,7 +5,7 @@ "id": "cb9d00f5-9613-471e-a4bb-6181311bf73b", "metadata": {}, "source": [ - "# Using the API functionality of binarycpython\n", + "# Tutorial: Using the API functionality of binary_c-python\n", "This notebook shows how to use the API functions that interface with binary_c. It usually is better to use wrapper functions that internally use these API functions, because most of the output here is very raw\n", "\n", "Binarycpython uses the Python-C extension framework to interface Python with C. The sourcecode for this is contained in `src/binary_c_python.c`, and the functions are available via `from binarycpython import _binary_c_bindings`.\n", diff --git a/docs/source/notebook_custom_logging.ipynb b/docs/source/notebook_custom_logging.ipynb index 84e41e6bc..bfdf2a5c8 100644 --- a/docs/source/notebook_custom_logging.ipynb +++ b/docs/source/notebook_custom_logging.ipynb @@ -5,7 +5,7 @@ "id": "879b596b-d70c-4f90-b668-563b4ad93ffc", "metadata": {}, "source": [ - "# Using custom logging routines with binarycpython\n", + "# Tutorial: Using custom logging routines with binary_c-python\n", "In this notebook you'll learn how to use the custom logging functionality" ] }, diff --git a/docs/source/notebook_extra_features.ipynb b/docs/source/notebook_extra_features.ipynb index b1a9ddb03..076b4098e 100644 --- a/docs/source/notebook_extra_features.ipynb +++ b/docs/source/notebook_extra_features.ipynb @@ -5,7 +5,7 @@ "id": "d5c04b77-f0be-4b33-8c03-c72eb846527c", "metadata": {}, "source": [ - "# Extra features and functionality of binarycpython\n", + "# Tutorial: Extra features and functionality of binary_c-python\n", "In this notebook we'll go over some of the extra features and functionality that was not covered in the other notebooks.\n", "\n", "Within the module `binarycpython.utils.functions` there are many functions that can be useful when using binarycpython. We can see which functions are in there, again by using the `help()`" diff --git a/docs/source/notebook_individual_systems.ipynb b/docs/source/notebook_individual_systems.ipynb index 21d49016f..e6451e762 100644 --- a/docs/source/notebook_individual_systems.ipynb +++ b/docs/source/notebook_individual_systems.ipynb @@ -5,7 +5,7 @@ "id": "a544d28c-c2e1-4c6a-b55b-8caec440743f", "metadata": {}, "source": [ - "# Running individual systems with binarycpython\n", + "# Tutorial: Running individual systems with binary_c-python\n", "This notebook will show you how to run single systems and analyze their results.\n", "\n", "It can be useful to have some functions to quickly run a single system to e.g. inspect what evolutionary steps a specific system goes through, to plot the mass loss evolution of a single star, etc. " diff --git a/docs/source/notebook_luminosity_function_binaries.ipynb b/docs/source/notebook_luminosity_function_binaries.ipynb index fb64dbcc9..47a96d093 100644 --- a/docs/source/notebook_luminosity_function_binaries.ipynb +++ b/docs/source/notebook_luminosity_function_binaries.ipynb @@ -5,7 +5,7 @@ "id": "bbbaafbb-fd7d-4b73-a970-93506ba35d71", "metadata": {}, "source": [ - "# Zero-age stellar luminosity function in binaries\n", + "# Example use case: Zero-age stellar luminosity function in binaries\n", "\n", "In this notebook we compute the luminosity function of the zero-age main-sequence by running a population of binary stars using binary_c. \n", "\n", @@ -805,14 +805,6 @@ "p.set_ylabel(\"Number of stars\")\n", "p.set(yscale=\"log\")" ] - }, - { - "cell_type": "code", - "execution_count": null, - "id": "e7541ebf-fe9a-4fb0-a88e-bb318d06f9eb", - "metadata": {}, - "outputs": [], - "source": [] } ], "metadata": { diff --git a/docs/source/notebook_luminosity_function_single.ipynb b/docs/source/notebook_luminosity_function_single.ipynb index fb971b34a..5980adf6d 100644 --- a/docs/source/notebook_luminosity_function_single.ipynb +++ b/docs/source/notebook_luminosity_function_single.ipynb @@ -430,14 +430,6 @@ "Does this look like a reasonable stellar luminosity function to you? The implication is that the most likely stellar luminosity is 10<sup>5.8</sup> L<sub>☉</sub>! Clearly, this is not very realistic... let's see what went wrong." ] }, - { - "cell_type": "markdown", - "id": "44586e42-b7cb-4a55-be0a-330b98b20de4", - "metadata": {}, - "source": [ - "## " - ] - }, { "cell_type": "markdown", "id": "e32c3bbf-390f-45da-ad9c-cc3e7c9449dc", @@ -554,9 +546,11 @@ { "cell_type": "markdown", "id": "673031c9-7d80-45d4-b209-301c127d3edf", - "metadata": {}, + "metadata": { + "tags": [] + }, "source": [ - "# A better-sampled grid\n", + "## A better-sampled grid\n", "\n", "The IMF has many more low-mass stars than high-mass stars. So, instead of sampling M1 linearly, we can sample it in log space. \n", "\n", diff --git a/docs/source/notebook_population.ipynb b/docs/source/notebook_population.ipynb index f6f27ee43..fff337533 100644 --- a/docs/source/notebook_population.ipynb +++ b/docs/source/notebook_population.ipynb @@ -7,7 +7,7 @@ "tags": [] }, "source": [ - "# Running populations with binarycpython\n", + "# Tutorial: Running populations with binary_c-python\n", "This notebook will show you how to evolve a population of stars\n", "\n", "Much of the code in the binarycpython package is written to evolve a population of stars through the Population object, rather than running a single system. Let's go through the functionality of this object step by step and set up some example populations. \n", -- GitLab