From 66fe584811251d1f35a6142a8f0770f1cd1498b1 Mon Sep 17 00:00:00 2001
From: David Hendriks <davidhendriks93@gmail.com>
Date: Tue, 27 Apr 2021 10:15:22 +0100
Subject: [PATCH] Working on Moe Distefano implementation
---
binarycpython/utils/functions.py | 35 +
binarycpython/utils/grid.py | 34 +-
binarycpython/utils/grid_options_defaults.py | 131 +-
binarycpython/utils/moe_distefano_data.py | 12944 +++++++++++++++++
4 files changed, 13084 insertions(+), 60 deletions(-)
create mode 100644 binarycpython/utils/moe_distefano_data.py
diff --git a/binarycpython/utils/functions.py b/binarycpython/utils/functions.py
index 315902923..61941dbbe 100644
--- a/binarycpython/utils/functions.py
+++ b/binarycpython/utils/functions.py
@@ -24,12 +24,47 @@ from typing import Union, Any
from collections import defaultdict
from binarycpython import _binary_c_bindings
+import binarycpython.utils.moe_distefano_data as moe_distefano_data
########################################################
# Unsorted
########################################################
+def get_moe_distefano_dataset(options):
+ """
+ Function to get the default moe and Distefano dataset or accept a userinput.
+ """
+
+ if not options.get("file", None):
+ print("Using the default Moe and de Stefano 2017 datafile")
+
+ json_data = moe_distefano_data.moe_distefano_2017_data
+
+ else:
+ if not os.path.isfile(options["file"]):
+ print(
+ "The provided 'file' Moe and de Stefano JSON file does not seem to exist at {}".format(
+ options["file"]
+ )
+ )
+ raise ValueError
+ if not options["file"].endswith(".json"):
+ print("Provided filename does not end with .json")
+
+ else:
+ # Read input data and Clean up the data if there are whitespaces around the keys
+ with open(options["file"], "r") as data_filehandle:
+ datafile_data = data_filehandle.read()
+ datafile_data = datafile_data.replace('" ', '"')
+ datafile_data = datafile_data.replace(' "', '"')
+ datafile_data = datafile_data.replace(' "', '"')
+ json_data = json.loads(datafile_data)
+
+ return json_data
+
+
+
def imports():
for name, val in globals().items():
if isinstance(val, types.ModuleType):
diff --git a/binarycpython/utils/grid.py b/binarycpython/utils/grid.py
index 56f73e215..8a004d14a 100644
--- a/binarycpython/utils/grid.py
+++ b/binarycpython/utils/grid.py
@@ -68,8 +68,11 @@ from binarycpython.utils.functions import (
update_dicts,
BinaryCEncoder,
extract_ensemble_json_from_string,
+ get_moe_distefano_dataset,
)
+import binarycpython.utils.moe_distefano_data
+
# from binarycpython.utils.hpc_functions import (
# get_condor_version,
# get_slurm_version,
@@ -2792,44 +2795,23 @@ class Population:
The dictionary should contain a file to
"""
- # Checks on the input
+
+ # Require input options
if not options:
print("Please provide a options dictionary.")
raise ValueError
- if not options.get("file", None):
- print(
- "Please set option 'file' to point to the Moe and de Stefano JSON file"
- )
- raise ValueError
- else:
- if not os.path.isfile(options["file"]):
- print(
- "The provided 'file' Moe and de Stefano JSON file does not seem to exist at {}".format(
- options["file"]
- )
- )
- raise ValueError
- if not options["file"].endswith(".json"):
- print("Provided filename does not end with .json")
-
# TODO: put this in defaults
- default_options = moe_distefano_default_options.deepcopy()
+ default_options = copy.deepcopy(moe_distefano_default_options)
# Take the option dictionary that was given and override.
options = update_dicts(default_options, options)
- # Write to a file
+ # Write options to a file
with open("/tmp/moeopts.dat", "w") as f:
f.write(json.dumps(options, indent=4))
- # Read input data and Clean up the data if there are whitespaces around the keys
- with open(options["file"], "r") as data_filehandle:
- datafile_data = data_filehandle.read()
- datafile_data = datafile_data.replace('" ', '"')
- datafile_data = datafile_data.replace(' "', '"')
- datafile_data = datafile_data.replace(' "', '"')
- json_data = json.loads(datafile_data)
+ json_data = get_moe_distefano_dataset(options)
# entry of log10M1 is a list containing 1 dict. We can take the dict out of the list
json_data["log10M1"] = json_data["log10M1"][0]
diff --git a/binarycpython/utils/grid_options_defaults.py b/binarycpython/utils/grid_options_defaults.py
index 958a49c38..190741d0c 100644
--- a/binarycpython/utils/grid_options_defaults.py
+++ b/binarycpython/utils/grid_options_defaults.py
@@ -11,6 +11,8 @@ There are several other functions in this module, mostly to generate help texts
With this its also possible to automatically generate a document containing all the setting names + descriptions.
All the options starting with _ should not be changed by the user except when you really know what you're doing (which is probably hacking the code :P)
+
+# TODO: add moe distefano
"""
import os
@@ -501,8 +503,10 @@ moe_distefano_default_options = {
"logP": [0.0, 8.0], # 0 = log10(1 day) # 8 = log10(10^8 days)
"ecc": [0.0, 1.0],
},
+
# minimum stellar mass
"Mmin": 0.07,
+
# multiplicity model (as a function of log10M1)
#
# You can use 'Poisson' which uses the system multiplicty
@@ -559,15 +563,85 @@ moe_distefano_default_options = {
# testing purposes or comparing to old grids.
"normalize_multiplicities": "merge",
# q extrapolation (below 0.15) method
+ # none # q extrapolation (below 0.15) method
# none
# flat
# linear2
# plaw2
# nolowq
+ # flat
+ # linear2
+ # plaw2
+ # nolowq
"q_low_extrapolation_method": "linear2",
"q_high_extrapolation_method": "linear2",
}
+moe_distefano_default_options_description = {
+ "resolutions": "",
+ "ranges": "",
+ "Mmin": "Minimum stellar mass",
+ "multiplicity_model": """
+multiplicity model (as a function of log10M1)
+
+You can use 'Poisson' which uses the system multiplicty
+given by Moe and maps this to single/binary/triple/quad
+fractions.
+
+Alternatively, 'data' takes the fractions directly
+from the data, but then triples and quadruples are
+combined (and there are NO quadruples).
+""",
+ "multiplicity_modulator": """
+[single, binary, triple, quadruple]
+
+e.g. [1,0,0,0] for single stars only
+ [0,1,0,0] for binary stars only
+
+defaults to [1,1,1,1] i.e. all types
+""",
+ "normalize_multiplicities": """
+given a mix of multiplities, you can either (noting that
+here (S,B,T,Q) = appropriate modulator * model(S,B,T,Q) )
+
+'norm' : normalize so the whole population is 1.0
+ after implementing the appropriate fractions
+ S/(S+B+T+Q), B/(S+B+T+Q), T/(S+B+T+Q), Q/(S+B+T+Q)
+
+'raw' : stick to what is predicted, i.e.
+ S/(S+B+T+Q), B/(S+B+T+Q), T/(S+B+T+Q), Q/(S+B+T+Q)
+ without normalization
+ (in which case the total probability < 1.0 unless
+ all you use single, binary, triple and quadruple)
+
+'merge' : e.g. if you only have single and binary,
+ add the triples and quadruples to the binaries, so
+ binaries represent all multiple systems
+ ...
+ *** this is canonical binary population synthesis ***
+
+ Note: if multiplicity_modulator == [1,1,1,1] this
+ option does nothing (equivalent to 'raw').
+
+note: if you only set one multiplicity_modulator
+to 1, and all the others to 0, then normalizing
+will mean that you effectively have the same number
+of stars as single, binary, triple or quad (whichever
+is non-zero) i.e. the multiplicity fraction is ignored.
+This is probably not useful except for
+testing purposes or comparing to old grids.
+""",
+ "q_low_extrapolation_method": """
+q extrapolation (below 0.15) method
+ none
+ flat
+ linear2
+ plaw2
+ nolowq
+""",
+ "q_high_extrapolation_method": "Same as q_low_extrapolation_method"
+}
+
#################################
# Grid options functions
@@ -682,41 +756,30 @@ def write_grid_options_to_rst_file(output_file: str) -> None:
print("\n", file=f)
# Start public options part
- print("Public options", file=f)
- print("{}".format("-" * len("Public options")), file=f)
- print("The following options are meant to be changed by the user.", file=f)
- print("\n", file=f)
+ print_option_descriptions(f, public_options, descriptions, "Public options", "The following options are meant to be changed by the user.")
- for public_option in sorted(public_options):
- if public_option in descriptions:
- print(
- "| **{}**: {}".format(public_option, descriptions[public_option]),
- file=f,
- )
- else:
- print(
- "| **{}**: No description available yet".format(public_option),
- file=f,
- )
- print("", file=f)
+ # Moe & Distefano options:
+ print_option_descriptions(f, moe_distefano_default_options, moe_distefano_default_options_description, "Moe & Distefano sampler options", "The following options are meant to be changed by the user.")
# Start private options part
- print("Private options", file=f)
- print("{}".format("-" * len("Private options")), file=f)
- print(
- "The following options are not meant to be changed by the user, as these options are used and set internally by the object itself. The description still is provided, but just for documentation purposes.",
- file=f,
- )
+ print_option_descriptions(f, private_options, descriptions, "Private options", "The following options are not meant to be changed by the user, as these options are used and set internally by the object itself. The description still is provided, but just for documentation purposes.")
- for private_option in sorted(private_options):
- if private_option in descriptions:
- print(
- "| **{}**: {}".format(private_option, descriptions[private_option]),
- file=f,
- )
- else:
- print(
- "| **{}**: No description available yet".format(private_option),
- file=f,
- )
- print("", file=f)
+def print_option_descriptions(filehandle, options, descriptions, title, extra_text):
+ # Start public options part
+ print("{}".format(title), file=filehandle)
+ print("{}".format("-" * len("{}".format(title))), file=filehandle)
+ print("{}".format(extra_text), file=filehandle)
+ print("\n", file=filehandle)
+
+ for option in sorted(options):
+ if option in descriptions:
+ print(
+ "| **{}**: {}".format(option, descriptions[option]),
+ file=filehandle,
+ )
+ else:
+ print(
+ "| **{}**: No description available yet".format(option),
+ file=filehandle,
+ )
+ print("", file=filehandle)
\ No newline at end of file
diff --git a/binarycpython/utils/moe_distefano_data.py b/binarycpython/utils/moe_distefano_data.py
new file mode 100644
index 000000000..a5eb246f0
--- /dev/null
+++ b/binarycpython/utils/moe_distefano_data.py
@@ -0,0 +1,12944 @@
+"""
+File containing dictionary with the Moe & diStefano 2017 dataset. Prepared by Sophie Dykes
+"""
+
+moe_distefano_2017_data = {
+ "Comments": "File contains data concerning properties for different log10(primary mass) for multiple star systems. Data from Moe and Di Stefano (2017): https://ui.adsabs.harvard.edu/abs/2017ApJS..230...15M/abstract . Github: https://gitlab.eps.surrey.ac.uk/sd00599/fyp",
+ "log10M1": [
+ {
+ "-1.0": {
+ "f_multi": 0.1126,
+ "multi system fraction": 0.0995,
+ "binary star fraction": 0.0929,
+ "triple/quad star fraction": 0.0066,
+ "single star fraction": 0.9005,
+ "poisson_model": {
+ "single_fraction": 0.894,
+ "binary_fraction": 0.101,
+ "triple_fraction": 0.00566,
+ "quadruple_fraction": 2.13e-05
+ },
+ "logP": {
+ "0.25": {
+ "periodfrac": 0.0026031,
+ "P_bin": 1.0,
+ "normed_bin_frac_p_dist": 0.02617,
+ "normed_tripquad_frac_p_dist": 0.0,
+ "q": {
+ "0.15": 0.0,
+ "0.25": 0.0,
+ "0.35": 0.0,
+ "0.45": 0.0,
+ "0.55": 0.0,
+ "0.65": 0.0,
+ "0.75": 0.0,
+ "0.85": 0.423083,
+ "0.95": 0.576917
+ },
+ "e": {
+ "0.05": 1.0,
+ "0.15": 0.0,
+ "0.25": 0.0,
+ "0.35": 0.0,
+ "0.45": 0.0,
+ "0.55": 0.0,
+ "0.65": 0.0,
+ "0.75": 0.0,
+ "0.85": 0.0,
+ "0.95": 0.0
+ }
+ },
+ "0.75": {
+ "periodfrac": 0.00328462,
+ "P_bin": 1.0,
+ "normed_bin_frac_p_dist": 0.03302,
+ "normed_tripquad_frac_p_dist": 0.0,
+ "q": {
+ "0.15": 0.0,
+ "0.25": 0.0,
+ "0.35": 0.0,
+ "0.45": 0.0,
+ "0.55": 0.0,
+ "0.65": 0.0,
+ "0.75": 0.0,
+ "0.85": 0.423083,
+ "0.95": 0.576917
+ },
+ "e": {
+ "0.05": 1.0,
+ "0.15": 0.0,
+ "0.25": 0.0,
+ "0.35": 0.0,
+ "0.45": 0.0,
+ "0.55": 0.0,
+ "0.65": 0.0,
+ "0.75": 0.0,
+ "0.85": 0.0,
+ "0.95": 0.0
+ }
+ },
+ "1.25": {
+ "periodfrac": 0.00426667,
+ "P_bin": 1.0,
+ "normed_bin_frac_p_dist": 0.04289,
+ "normed_tripquad_frac_p_dist": 0.0,
+ "q": {
+ "0.15": 0.0,
+ "0.25": 0.0,
+ "0.35": 0.0,
+ "0.45": 0.0,
+ "0.55": 0.0,
+ "0.65": 0.0,
+ "0.75": 0.0,
+ "0.85": 0.423083,
+ "0.95": 0.576917
+ },
+ "e": {
+ "0.05": 0.330824,
+ "0.15": 0.165642,
+ "0.25": 0.129153,
+ "0.35": 0.110009,
+ "0.45": 0.100964,
+ "0.55": 0.0990032,
+ "0.65": 0.057533,
+ "0.75": 0.00687094,
+ "0.85": 0.0,
+ "0.95": 0.0
+ }
+ },
+ "1.75": {
+ "periodfrac": 0.0055291,
+ "P_bin": 0.995371,
+ "normed_bin_frac_p_dist": 0.05532,
+ "normed_tripquad_frac_p_dist": 0.001953,
+ "q": {
+ "0.15": 0.0,
+ "0.25": 0.0,
+ "0.35": 0.0,
+ "0.45": 0.0,
+ "0.55": 0.0,
+ "0.65": 0.0,
+ "0.75": 0.0,
+ "0.85": 0.423083,
+ "0.95": 0.576917
+ },
+ "e": {
+ "0.05": 0.14167,
+ "0.15": 0.131895,
+ "0.25": 0.12826,
+ "0.35": 0.125956,
+ "0.45": 0.12427,
+ "0.55": 0.123559,
+ "0.65": 0.12234,
+ "0.75": 0.0809714,
+ "0.85": 0.0210788,
+ "0.95": 0.0
+ }
+ },
+ "2.25": {
+ "periodfrac": 0.00704218,
+ "P_bin": 0.981652,
+ "normed_bin_frac_p_dist": 0.06949,
+ "normed_tripquad_frac_p_dist": 0.009859,
+ "q": {
+ "0.15": 0.0,
+ "0.25": 0.0,
+ "0.35": 0.0,
+ "0.45": 0.0,
+ "0.55": 0.0,
+ "0.65": 0.0,
+ "0.75": 0.0,
+ "0.85": 0.424963,
+ "0.95": 0.575037
+ },
+ "e": {
+ "0.05": 0.0944499,
+ "0.15": 0.110031,
+ "0.25": 0.117032,
+ "0.35": 0.121823,
+ "0.45": 0.125515,
+ "0.55": 0.127863,
+ "0.65": 0.127994,
+ "0.75": 0.112768,
+ "0.85": 0.0563073,
+ "0.95": 0.00621564
+ }
+ },
+ "2.75": {
+ "periodfrac": 0.0086958,
+ "P_bin": 0.963641,
+ "normed_bin_frac_p_dist": 0.08423,
+ "normed_tripquad_frac_p_dist": 0.02412,
+ "q": {
+ "0.15": 0.0,
+ "0.25": 0.0,
+ "0.35": 0.0,
+ "0.45": 0.0,
+ "0.55": 0.0,
+ "0.65": 0.0,
+ "0.75": 0.0,
+ "0.85": 0.426869,
+ "0.95": 0.573131
+ },
+ "e": {
+ "0.05": 0.0754871,
+ "0.15": 0.0987081,
+ "0.25": 0.110213,
+ "0.35": 0.118419,
+ "0.45": 0.12492,
+ "0.55": 0.129746,
+ "0.65": 0.13039,
+ "0.75": 0.123258,
+ "0.85": 0.0725423,
+ "0.95": 0.0163158
+ }
+ },
+ "3.25": {
+ "periodfrac": 0.0101032,
+ "P_bin": 0.942517,
+ "normed_bin_frac_p_dist": 0.09572,
+ "normed_tripquad_frac_p_dist": 0.04431,
+ "q": {
+ "0.15": 0.0,
+ "0.25": 0.0,
+ "0.35": 0.0,
+ "0.45": 0.0,
+ "0.55": 0.0,
+ "0.65": 0.0,
+ "0.75": 0.0,
+ "0.85": 0.429069,
+ "0.95": 0.570931
+ },
+ "e": {
+ "0.05": 0.0657833,
+ "0.15": 0.0922986,
+ "0.25": 0.106244,
+ "0.35": 0.116451,
+ "0.45": 0.124683,
+ "0.55": 0.131158,
+ "0.65": 0.132341,
+ "0.75": 0.127869,
+ "0.85": 0.0804725,
+ "0.95": 0.0226993
+ }
+ },
+ "3.75": {
+ "periodfrac": 0.0110051,
+ "P_bin": 0.91881,
+ "normed_bin_frac_p_dist": 0.1016,
+ "normed_tripquad_frac_p_dist": 0.06818,
+ "q": {
+ "0.15": 0.0,
+ "0.25": 0.0,
+ "0.35": 0.0,
+ "0.45": 0.0,
+ "0.55": 0.0,
+ "0.65": 0.0,
+ "0.75": 0.0,
+ "0.85": 0.431586,
+ "0.95": 0.568414
+ },
+ "e": {
+ "0.05": 0.0601091,
+ "0.15": 0.0884375,
+ "0.25": 0.103949,
+ "0.35": 0.115505,
+ "0.45": 0.124938,
+ "0.55": 0.132423,
+ "0.65": 0.133797,
+ "0.75": 0.13029,
+ "0.85": 0.0845054,
+ "0.95": 0.0260463
+ }
+ },
+ "4.25": {
+ "periodfrac": 0.0113538,
+ "P_bin": 0.89282,
+ "normed_bin_frac_p_dist": 0.1019,
+ "normed_tripquad_frac_p_dist": 0.09285,
+ "q": {
+ "0.15": 0.0,
+ "0.25": 0.0,
+ "0.35": 0.0,
+ "0.45": 0.0,
+ "0.55": 0.0,
+ "0.65": 0.0,
+ "0.75": 0.0,
+ "0.85": 0.434447,
+ "0.95": 0.565553
+ },
+ "e": {
+ "0.05": 0.0563761,
+ "0.15": 0.085828,
+ "0.25": 0.102429,
+ "0.35": 0.114957,
+ "0.45": 0.125274,
+ "0.55": 0.133513,
+ "0.65": 0.135029,
+ "0.75": 0.131961,
+ "0.85": 0.086745,
+ "0.95": 0.0278885
+ }
+ },
+ "4.75": {
+ "periodfrac": 0.0111577,
+ "P_bin": 0.864737,
+ "normed_bin_frac_p_dist": 0.09698,
+ "normed_tripquad_frac_p_dist": 0.1152,
+ "q": {
+ "0.15": 0.0,
+ "0.25": 0.0,
+ "0.35": 0.0,
+ "0.45": 0.0,
+ "0.55": 0.0,
+ "0.65": 0.0,
+ "0.75": 0.0,
+ "0.85": 0.437684,
+ "0.95": 0.562316
+ },
+ "e": {
+ "0.05": 0.0537433,
+ "0.15": 0.0839551,
+ "0.25": 0.101361,
+ "0.35": 0.114626,
+ "0.45": 0.125623,
+ "0.55": 0.134449,
+ "0.65": 0.136076,
+ "0.75": 0.133203,
+ "0.85": 0.088098,
+ "0.95": 0.0288651
+ }
+ },
+ "5.25": {
+ "periodfrac": 0.0104133,
+ "P_bin": 0.834686,
+ "normed_bin_frac_p_dist": 0.08737,
+ "normed_tripquad_frac_p_dist": 0.1314,
+ "q": {
+ "0.15": 0.0,
+ "0.25": 0.0,
+ "0.35": 0.0,
+ "0.45": 0.0,
+ "0.55": 0.0,
+ "0.65": 0.0,
+ "0.75": 0.0,
+ "0.85": 0.441333,
+ "0.95": 0.558667
+ },
+ "e": {
+ "0.05": 0.0517855,
+ "0.15": 0.0825411,
+ "0.25": 0.100565,
+ "0.35": 0.114409,
+ "0.45": 0.125945,
+ "0.55": 0.135239,
+ "0.65": 0.136956,
+ "0.75": 0.134167,
+ "0.85": 0.0889851,
+ "0.95": 0.0294067
+ }
+ },
+ "5.75": {
+ "periodfrac": 0.00887353,
+ "P_bin": 0.802745,
+ "normed_bin_frac_p_dist": 0.0716,
+ "normed_tripquad_frac_p_dist": 0.1336,
+ "q": {
+ "0.15": 0.0,
+ "0.25": 0.0,
+ "0.35": 0.0,
+ "0.45": 0.0,
+ "0.55": 0.0,
+ "0.65": 0.0,
+ "0.75": 0.0,
+ "0.85": 0.445437,
+ "0.95": 0.554563
+ },
+ "e": {
+ "0.05": 0.0502699,
+ "0.15": 0.0814303,
+ "0.25": 0.099944,
+ "0.35": 0.114252,
+ "0.45": 0.126226,
+ "0.55": 0.135904,
+ "0.65": 0.137694,
+ "0.75": 0.134937,
+ "0.85": 0.0896122,
+ "0.95": 0.0297304
+ }
+ },
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+}
\ No newline at end of file
--
GitLab