From 559b7b5b7736006af4014e92a0b1e92d409b7091 Mon Sep 17 00:00:00 2001
From: dh00601 <dh00601@surrey.ac.uk>
Date: Sun, 9 Jan 2022 18:21:07 +0000
Subject: [PATCH] updated docs
---
docs/build/doctrees/dicts.doctree | Bin 84410 -> 104988 bytes
docs/build/doctrees/ensemble.doctree | Bin 47644 -> 47650 bytes
docs/build/doctrees/environment.pickle | Bin 889549 -> 891712 bytes
.../population_extensions/gridcode.doctree | Bin 53691 -> 59245 bytes
docs/build/html/_images/test_coverage.svg | 6 +-
.../utils/custom_logging_functions.html | 2 +-
.../_modules/binarycpython/utils/dicts.html | 161 +++++++++++-------
.../binarycpython/utils/ensemble.html | 25 +--
.../binarycpython/utils/functions.html | 2 +-
.../_modules/binarycpython/utils/grid.html | 16 +-
.../binarycpython/utils/plot_functions.html | 2 +-
.../utils/population_extensions/HPC.html | 2 +-
.../Moe_di_Stefano_2017.html | 2 +-
.../population_extensions/analytics.html | 2 +-
.../utils/population_extensions/cache.html | 2 +-
.../utils/population_extensions/condor.html | 2 +-
.../utils/population_extensions/dataIO.html | 8 +-
.../distribution_functions.html | 2 +-
.../population_extensions/grid_logging.html | 2 +-
.../grid_options_defaults.html | 2 +-
.../utils/population_extensions/gridcode.html | 29 ++--
.../utils/population_extensions/metadata.html | 2 +-
.../utils/population_extensions/slurm.html | 2 +-
.../spacing_functions.html | 2 +-
.../population_extensions/version_info.html | 2 +-
.../utils/run_system_wrapper.html | 2 +-
.../binarycpython/utils/useful_funcs.html | 2 +-
docs/build/html/_modules/index.html | 2 +-
docs/build/html/binary_c_parameters.html | 2 +-
docs/build/html/custom_logging_functions.html | 2 +-
docs/build/html/dicts.html | 109 ++++++++++--
docs/build/html/ensemble.html | 32 ++--
docs/build/html/example_notebooks.html | 2 +-
docs/build/html/examples/notebook_BHBH.html | 2 +-
docs/build/html/examples/notebook_HRD.html | 2 +-
.../examples/notebook_api_functionality.html | 2 +-
.../notebook_common_envelope_evolution.html | 2 +-
.../examples/notebook_custom_logging.html | 2 +-
.../examples/notebook_extra_features.html | 2 +-
.../examples/notebook_individual_systems.html | 2 +-
...notebook_luminosity_function_binaries.html | 2 +-
.../notebook_luminosity_function_single.html | 2 +-
.../examples/notebook_massive_remnants.html | 2 +-
.../html/examples/notebook_population.html | 2 +-
.../html/examples/notebook_solar_system.html | 2 +-
.../html/examples/old/basic_example.html | 2 +-
.../old/workshop_example_notebook.html | 2 +-
docs/build/html/functions.html | 2 +-
docs/build/html/genindex.html | 10 +-
docs/build/html/grid.html | 2 +-
.../build/html/grid_options_descriptions.html | 2 +-
docs/build/html/index.html | 2 +-
docs/build/html/modules.html | 2 +-
docs/build/html/objects.inv | Bin 11412 -> 11410 bytes
docs/build/html/plot_functions.html | 2 +-
.../build/html/population_extensions/HPC.html | 2 +-
.../Moe_di_Stefano_2017.html | 2 +-
.../html/population_extensions/analytics.html | 2 +-
.../html/population_extensions/cache.html | 2 +-
.../html/population_extensions/condor.html | 2 +-
.../html/population_extensions/dataIO.html | 2 +-
.../distribution_functions.html | 2 +-
.../population_extensions/grid_logging.html | 2 +-
.../grid_options_defaults.html | 2 +-
.../html/population_extensions/gridcode.html | 46 +++--
.../html/population_extensions/metadata.html | 2 +-
.../html/population_extensions/slurm.html | 2 +-
.../spacing_functions.html | 2 +-
.../population_extensions/version_info.html | 2 +-
docs/build/html/py-modindex.html | 2 +-
docs/build/html/readme_link.html | 2 +-
docs/build/html/run_system_wrapper.html | 2 +-
docs/build/html/search.html | 2 +-
docs/build/html/searchindex.js | 2 +-
docs/build/html/stellar_types.html | 2 +-
docs/build/html/useful_funcs.html | 2 +-
docs/source/_templates/footer.html | 2 +-
docs/source/badges/test_coverage.svg | 6 +-
78 files changed, 361 insertions(+), 211 deletions(-)
diff --git a/docs/build/doctrees/dicts.doctree b/docs/build/doctrees/dicts.doctree
index 1bf524a0565c4889bac0b97ac985f9c6b9fdbbe8..41e35e9209ff0f2dc4d323d43ff86d9e5fc61c29 100644
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diff --git a/docs/build/doctrees/ensemble.doctree b/docs/build/doctrees/ensemble.doctree
index 35fb91e203f93f967f3b473a8044a0cffaa7f566..28b84dd301160769761b733c3c96264a28137b96 100644
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diff --git a/docs/build/doctrees/environment.pickle b/docs/build/doctrees/environment.pickle
index 21833e8797ae9ca577eab8b6c4fedd653f1d64e8..608b87d150a31c4a7839459d5767c5a8a051ee40 100644
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diff --git a/docs/build/doctrees/population_extensions/gridcode.doctree b/docs/build/doctrees/population_extensions/gridcode.doctree
index 06ff4f17237507ee941da7bc730a1e0bc31310cc..b15ef530e4f7ca5f5602657124ccf3a57a52270f 100644
GIT binary patch
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index d76f04f02..6d68f472b 100644
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@@ -9,13 +9,13 @@
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- <text x="80" y="14">51%</text>
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diff --git a/docs/build/html/_modules/binarycpython/utils/custom_logging_functions.html b/docs/build/html/_modules/binarycpython/utils/custom_logging_functions.html
index 0192f47c8..22c468473 100644
--- a/docs/build/html/_modules/binarycpython/utils/custom_logging_functions.html
+++ b/docs/build/html/_modules/binarycpython/utils/custom_logging_functions.html
@@ -551,7 +551,7 @@
provided by <a href="https://readthedocs.org">Read the Docs</a>.
<br><br>
-Generated on binarycpython git branch: development_0.9.3/2.2.1 git revision 65c361290c607d015366bca40731b634b361cfa0 url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c-python/-/tree/development_0.9.3/2.2.1">git url</a>.
+Generated on binarycpython git branch: development_0.9.3/2.2.1 git revision 7e2b822d04dcc5482eabcc79ac1fe76bc42a6ece url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c-python/-/tree/development_0.9.3/2.2.1">git url</a>.
<br><br>
Using binary_c with bit branch branch_david: git revision: "5845:20220107:201620bd7" url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c/-/tree/branch_david">git url</a>.
diff --git a/docs/build/html/_modules/binarycpython/utils/dicts.html b/docs/build/html/_modules/binarycpython/utils/dicts.html
index fedae4dc4..906af63f2 100644
--- a/docs/build/html/_modules/binarycpython/utils/dicts.html
+++ b/docs/build/html/_modules/binarycpython/utils/dicts.html
@@ -76,30 +76,34 @@
<span class="sd">"""</span>
<span class="kn">import</span> <span class="nn">collections</span>
+<span class="kn">from</span> <span class="nn">typing</span> <span class="kn">import</span> <span class="n">Union</span>
<span class="kn">import</span> <span class="nn">astropy.units</span> <span class="k">as</span> <span class="nn">u</span>
<span class="kn">import</span> <span class="nn">numpy</span> <span class="k">as</span> <span class="nn">np</span>
-<div class="viewcode-block" id="keys_to_floats"><a class="viewcode-back" href="../../../dicts.html#binarycpython.utils.dicts.keys_to_floats">[docs]</a><span class="k">def</span> <span class="nf">keys_to_floats</span><span class="p">(</span><span class="n">json_data</span><span class="p">):</span>
+<span class="c1"># Define all numerical types</span>
+
+<span class="n">ALLOWED_NUMERICAL_TYPES</span> <span class="o">=</span> <span class="p">(</span><span class="nb">int</span><span class="p">,</span> <span class="nb">float</span><span class="p">,</span> <span class="nb">complex</span><span class="p">,</span> <span class="n">np</span><span class="o">.</span><span class="n">number</span><span class="p">)</span>
+<span class="n">UNION_ALLOWED_NUMERICAL_TYPES</span> <span class="o">=</span> <span class="n">Union</span><span class="p">[</span><span class="nb">int</span><span class="p">,</span> <span class="nb">float</span><span class="p">,</span> <span class="nb">complex</span><span class="p">,</span> <span class="n">np</span><span class="o">.</span><span class="n">number</span><span class="p">]</span>
+
+<div class="viewcode-block" id="keys_to_floats"><a class="viewcode-back" href="../../../dicts.html#binarycpython.utils.dicts.keys_to_floats">[docs]</a><span class="k">def</span> <span class="nf">keys_to_floats</span><span class="p">(</span><span class="n">input_dict</span><span class="p">:</span> <span class="nb">dict</span><span class="p">)</span> <span class="o">-></span> <span class="nb">dict</span><span class="p">:</span>
<span class="sd">"""</span>
<span class="sd"> Function to convert all the keys of the dictionary to float to float</span>
<span class="sd"> we need to convert keys to floats:</span>
-<span class="sd"> this is ~ a factor 10 faster than David's recursive_change_key_to_float routine, probably because this version only does the float conversion, nothing else.</span>
-<span class="sd"> """</span>
-
- <span class="c1"># assumes nested dicts ...</span>
- <span class="c1"># new_data = {}</span>
+<span class="sd"> this is ~ a factor 10 faster than David's ``recursive_change_key_to_float`` routine, probably because this version only does the float conversion, nothing else.</span>
+<span class="sd"> </span>
+<span class="sd"> Args:</span>
+<span class="sd"> input_dict: dict of which we want to turn all the keys to float types if possible</span>
- <span class="c1"># but this copies the variable type, but has some</span>
- <span class="c1"># pointless copying</span>
- <span class="c1"># new_data = copy.copy(json_data)</span>
- <span class="c1"># new_data.clear()</span>
+<span class="sd"> Returns:</span>
+<span class="sd"> new_dict: dict of which the keys have been turned to float types where possible</span>
+<span class="sd"> """</span>
<span class="c1"># this adopts the type correctly *and* is fast</span>
- <span class="n">new_data</span> <span class="o">=</span> <span class="nb">type</span><span class="p">(</span><span class="n">json_data</span><span class="p">)()</span>
+ <span class="n">new_dict</span> <span class="o">=</span> <span class="nb">type</span><span class="p">(</span><span class="n">input_dict</span><span class="p">)()</span>
- <span class="k">for</span> <span class="n">k</span><span class="p">,</span> <span class="n">v</span> <span class="ow">in</span> <span class="n">json_data</span><span class="o">.</span><span class="n">items</span><span class="p">():</span>
+ <span class="k">for</span> <span class="n">k</span><span class="p">,</span> <span class="n">v</span> <span class="ow">in</span> <span class="n">input_dict</span><span class="o">.</span><span class="n">items</span><span class="p">():</span>
<span class="c1"># convert key to a float, if we can</span>
<span class="c1"># otherwise leave as is</span>
<span class="k">try</span><span class="p">:</span>
@@ -110,7 +114,7 @@
<span class="c1"># act on value(s)</span>
<span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">v</span><span class="p">,</span> <span class="nb">list</span><span class="p">):</span>
<span class="c1"># list data</span>
- <span class="n">new_data</span><span class="p">[</span><span class="n">newkey</span><span class="p">]</span> <span class="o">=</span> <span class="p">[</span>
+ <span class="n">new_dict</span><span class="p">[</span><span class="n">newkey</span><span class="p">]</span> <span class="o">=</span> <span class="p">[</span>
<span class="n">keys_to_floats</span><span class="p">(</span><span class="n">item</span><span class="p">)</span>
<span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">item</span><span class="p">,</span> <span class="n">collections</span><span class="o">.</span><span class="n">abc</span><span class="o">.</span><span class="n">Mapping</span><span class="p">)</span>
<span class="k">else</span> <span class="n">item</span>
@@ -118,20 +122,27 @@
<span class="p">]</span>
<span class="k">elif</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">v</span><span class="p">,</span> <span class="n">collections</span><span class="o">.</span><span class="n">abc</span><span class="o">.</span><span class="n">Mapping</span><span class="p">):</span>
<span class="c1"># dict, ordereddict, etc. data</span>
- <span class="n">new_data</span><span class="p">[</span><span class="n">newkey</span><span class="p">]</span> <span class="o">=</span> <span class="n">keys_to_floats</span><span class="p">(</span><span class="n">v</span><span class="p">)</span>
+ <span class="n">new_dict</span><span class="p">[</span><span class="n">newkey</span><span class="p">]</span> <span class="o">=</span> <span class="n">keys_to_floats</span><span class="p">(</span><span class="n">v</span><span class="p">)</span>
<span class="k">else</span><span class="p">:</span>
<span class="c1"># assume all other data are scalars</span>
- <span class="n">new_data</span><span class="p">[</span><span class="n">newkey</span><span class="p">]</span> <span class="o">=</span> <span class="n">v</span>
+ <span class="n">new_dict</span><span class="p">[</span><span class="n">newkey</span><span class="p">]</span> <span class="o">=</span> <span class="n">v</span>
- <span class="k">return</span> <span class="n">new_data</span></div>
+ <span class="k">return</span> <span class="n">new_dict</span></div>
-<div class="viewcode-block" id="recursive_change_key_to_float"><a class="viewcode-back" href="../../../dicts.html#binarycpython.utils.dicts.recursive_change_key_to_float">[docs]</a><span class="k">def</span> <span class="nf">recursive_change_key_to_float</span><span class="p">(</span><span class="n">input_dict</span><span class="p">):</span>
+<div class="viewcode-block" id="recursive_change_key_to_float"><a class="viewcode-back" href="../../../dicts.html#binarycpython.utils.dicts.recursive_change_key_to_float">[docs]</a><span class="k">def</span> <span class="nf">recursive_change_key_to_float</span><span class="p">(</span><span class="n">input_dict</span><span class="p">:</span> <span class="nb">dict</span><span class="p">)</span> <span class="o">-></span> <span class="nb">dict</span><span class="p">:</span>
<span class="sd">"""</span>
<span class="sd"> Function to recursively change the key to float</span>
<span class="sd"> This only works if the dict contains just sub-dicts or numbers/strings.</span>
+
<span class="sd"> Does not work with lists as values</span>
+
+<span class="sd"> Args:</span>
+<span class="sd"> input_dict: dict of which we want to turn all the keys to float types if possible</span>
+
+<span class="sd"> Returns:</span>
+<span class="sd"> new_dict: dict of which the keys have been turned to float types where possible</span>
<span class="sd"> """</span>
<span class="n">new_dict</span> <span class="o">=</span> <span class="n">collections</span><span class="o">.</span><span class="n">OrderedDict</span><span class="p">()</span>
@@ -153,26 +164,36 @@
<span class="k">return</span> <span class="n">new_dict</span></div>
-<div class="viewcode-block" id="recursive_change_key_to_string"><a class="viewcode-back" href="../../../dicts.html#binarycpython.utils.dicts.recursive_change_key_to_string">[docs]</a><span class="k">def</span> <span class="nf">recursive_change_key_to_string</span><span class="p">(</span><span class="n">input_dict</span><span class="p">,</span> <span class="n">custom_format</span><span class="o">=</span><span class="s2">"</span><span class="si">{:g}</span><span class="s2">"</span><span class="p">):</span>
+<div class="viewcode-block" id="recursive_change_key_to_string"><a class="viewcode-back" href="../../../dicts.html#binarycpython.utils.dicts.recursive_change_key_to_string">[docs]</a><span class="k">def</span> <span class="nf">recursive_change_key_to_string</span><span class="p">(</span><span class="n">input_dict</span><span class="p">:</span> <span class="nb">dict</span><span class="p">,</span> <span class="n">custom_format</span><span class="p">:</span> <span class="nb">str</span> <span class="o">=</span> <span class="s2">"</span><span class="si">{:g}</span><span class="s2">"</span><span class="p">):</span>
<span class="sd">"""</span>
-<span class="sd"> Function to recursively change the key back to a string but this time in a format that we decide</span>
+<span class="sd"> Function to recursively change the key back to a string but this time in a format that we decide. We'll try to turn a string key into a float key before formatting the key</span>
+
+<span class="sd"> Args:</span>
+<span class="sd"> input_dict: dict of which we want to turn all the keys to string types (with a custom format)</span>
+<span class="sd"> custom_format: custom format used when turning the key to strings</span>
+
+<span class="sd"> Returns:</span>
+<span class="sd"> new_dict: dict of which the keys have been turned to string types where possible</span>
<span class="sd"> """</span>
<span class="n">new_dict</span> <span class="o">=</span> <span class="n">collections</span><span class="o">.</span><span class="n">OrderedDict</span><span class="p">()</span>
<span class="k">for</span> <span class="n">key</span> <span class="ow">in</span> <span class="n">input_dict</span><span class="p">:</span>
+ <span class="c1"># Try to turn into a float</span>
+ <span class="k">try</span><span class="p">:</span>
+ <span class="n">string_key</span> <span class="o">=</span> <span class="nb">float</span><span class="p">(</span><span class="n">key</span><span class="p">)</span>
+ <span class="k">except</span> <span class="ne">ValueError</span><span class="p">:</span>
+ <span class="n">string_key</span> <span class="o">=</span> <span class="n">key</span>
+
+ <span class="c1"># Turn into string with new format</span>
+ <span class="k">if</span> <span class="ow">not</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">string_key</span><span class="p">,</span> <span class="nb">str</span><span class="p">):</span>
+ <span class="n">string_key</span> <span class="o">=</span> <span class="n">custom_format</span><span class="o">.</span><span class="n">format</span><span class="p">(</span><span class="n">string_key</span><span class="p">)</span>
+
+ <span class="c1"># If dictionary type, call function again</span>
<span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">input_dict</span><span class="p">[</span><span class="n">key</span><span class="p">],</span> <span class="p">(</span><span class="nb">dict</span><span class="p">,</span> <span class="n">collections</span><span class="o">.</span><span class="n">OrderedDict</span><span class="p">)):</span>
- <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">key</span><span class="p">,</span> <span class="p">(</span><span class="nb">int</span><span class="p">,</span> <span class="nb">float</span><span class="p">)):</span>
- <span class="n">string_key</span> <span class="o">=</span> <span class="n">custom_format</span><span class="o">.</span><span class="n">format</span><span class="p">(</span><span class="n">key</span><span class="p">)</span>
- <span class="n">new_dict</span><span class="p">[</span><span class="n">string_key</span><span class="p">]</span> <span class="o">=</span> <span class="n">recursive_change_key_to_string</span><span class="p">(</span><span class="n">input_dict</span><span class="p">[</span><span class="n">key</span><span class="p">])</span>
- <span class="k">else</span><span class="p">:</span>
- <span class="n">new_dict</span><span class="p">[</span><span class="n">key</span><span class="p">]</span> <span class="o">=</span> <span class="n">recursive_change_key_to_string</span><span class="p">(</span><span class="n">input_dict</span><span class="p">[</span><span class="n">key</span><span class="p">])</span>
+ <span class="n">new_dict</span><span class="p">[</span><span class="n">string_key</span><span class="p">]</span> <span class="o">=</span> <span class="n">recursive_change_key_to_string</span><span class="p">(</span><span class="n">input_dict</span><span class="p">[</span><span class="n">key</span><span class="p">],</span> <span class="n">custom_format</span><span class="p">)</span>
<span class="k">else</span><span class="p">:</span>
- <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">key</span><span class="p">,</span> <span class="p">(</span><span class="nb">int</span><span class="p">,</span> <span class="nb">float</span><span class="p">)):</span>
- <span class="n">string_key</span> <span class="o">=</span> <span class="n">custom_format</span><span class="o">.</span><span class="n">format</span><span class="p">(</span><span class="n">key</span><span class="p">)</span>
- <span class="n">new_dict</span><span class="p">[</span><span class="n">string_key</span><span class="p">]</span> <span class="o">=</span> <span class="n">input_dict</span><span class="p">[</span><span class="n">key</span><span class="p">]</span>
- <span class="k">else</span><span class="p">:</span>
- <span class="n">new_dict</span><span class="p">[</span><span class="n">key</span><span class="p">]</span> <span class="o">=</span> <span class="n">input_dict</span><span class="p">[</span><span class="n">key</span><span class="p">]</span>
+ <span class="n">new_dict</span><span class="p">[</span><span class="n">string_key</span><span class="p">]</span> <span class="o">=</span> <span class="n">input_dict</span><span class="p">[</span><span class="n">key</span><span class="p">]</span>
<span class="k">return</span> <span class="n">new_dict</span></div>
@@ -203,22 +224,22 @@
<span class="k">return</span> <span class="n">dic</span><span class="p">[</span><span class="n">keys</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">]]</span>
-<span class="k">def</span> <span class="nf">_recursive_normalize_floats</span><span class="p">(</span><span class="n">path</span><span class="p">,</span> <span class="n">d</span><span class="p">,</span> <span class="n">const</span><span class="p">,</span> <span class="n">parent</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="n">ignore</span><span class="o">=</span><span class="kc">None</span><span class="p">):</span>
+<span class="k">def</span> <span class="nf">_recursive_normalize_floats</span><span class="p">(</span><span class="n">path</span><span class="p">,</span> <span class="n">input_dict</span><span class="p">,</span> <span class="n">factor</span><span class="p">,</span> <span class="n">parent</span><span class="o">=</span><span class="kc">None</span><span class="p">,</span> <span class="n">ignore</span><span class="o">=</span><span class="kc">None</span><span class="p">):</span>
<span class="sd">"""</span>
-<span class="sd"> function to walk through the dictionary, multiplying only float values by a const</span>
+<span class="sd"> Function to walk through the dictionary, multiplying only float values by a factor</span>
<span class="sd"> """</span>
<span class="k">if</span> <span class="ow">not</span> <span class="n">parent</span><span class="p">:</span>
- <span class="n">parent</span> <span class="o">=</span> <span class="n">d</span>
+ <span class="n">parent</span> <span class="o">=</span> <span class="n">input_dict</span>
- <span class="k">for</span> <span class="n">k</span><span class="p">,</span> <span class="n">v</span> <span class="ow">in</span> <span class="n">d</span><span class="o">.</span><span class="n">items</span><span class="p">():</span>
+ <span class="k">for</span> <span class="n">k</span><span class="p">,</span> <span class="n">v</span> <span class="ow">in</span> <span class="n">input_dict</span><span class="o">.</span><span class="n">items</span><span class="p">():</span>
<span class="k">if</span> <span class="n">ignore</span> <span class="ow">and</span> <span class="n">k</span> <span class="ow">in</span> <span class="n">ignore</span><span class="p">:</span>
<span class="k">continue</span>
<span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">v</span><span class="p">,</span> <span class="nb">float</span><span class="p">):</span>
<span class="n">path</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">k</span><span class="p">)</span>
- <span class="c1"># must be a float, multiply by the constant</span>
- <span class="n">_nested_set</span><span class="p">(</span><span class="n">parent</span><span class="p">,</span> <span class="n">path</span><span class="p">,</span> <span class="n">v</span> <span class="o">*</span> <span class="n">const</span><span class="p">)</span>
+ <span class="c1"># must be a float, multiply by the factor</span>
+ <span class="n">_nested_set</span><span class="p">(</span><span class="n">parent</span><span class="p">,</span> <span class="n">path</span><span class="p">,</span> <span class="n">v</span> <span class="o">*</span> <span class="n">factor</span><span class="p">)</span>
<span class="n">path</span><span class="o">.</span><span class="n">pop</span><span class="p">()</span>
<span class="k">elif</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">v</span><span class="p">,</span> <span class="p">(</span><span class="nb">str</span><span class="p">,</span> <span class="nb">int</span><span class="p">)):</span>
<span class="n">path</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">k</span><span class="p">)</span>
@@ -233,7 +254,7 @@
<span class="k">elif</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">v</span><span class="p">,</span> <span class="n">collections</span><span class="o">.</span><span class="n">abc</span><span class="o">.</span><span class="n">Mapping</span><span class="p">):</span>
<span class="n">path</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">k</span><span class="p">)</span>
<span class="c1"># nested dict</span>
- <span class="n">_recursive_normalize_floats</span><span class="p">(</span><span class="n">path</span><span class="p">,</span> <span class="n">v</span><span class="p">,</span> <span class="n">const</span><span class="p">,</span> <span class="n">parent</span><span class="o">=</span><span class="n">parent</span><span class="p">)</span>
+ <span class="n">_recursive_normalize_floats</span><span class="p">(</span><span class="n">path</span><span class="p">,</span> <span class="n">v</span><span class="p">,</span> <span class="n">factor</span><span class="p">,</span> <span class="n">parent</span><span class="o">=</span><span class="n">parent</span><span class="p">)</span>
<span class="n">path</span><span class="o">.</span><span class="n">pop</span><span class="p">()</span>
<span class="k">else</span><span class="p">:</span>
<span class="nb">print</span><span class="p">(</span>
@@ -243,17 +264,17 @@
<span class="p">)</span>
-<div class="viewcode-block" id="multiply_float_values"><a class="viewcode-back" href="../../../dicts.html#binarycpython.utils.dicts.multiply_float_values">[docs]</a><span class="k">def</span> <span class="nf">multiply_float_values</span><span class="p">(</span><span class="n">d</span><span class="p">,</span> <span class="n">const</span><span class="p">,</span> <span class="n">ignore</span><span class="o">=</span><span class="kc">None</span><span class="p">):</span>
+<div class="viewcode-block" id="multiply_float_values"><a class="viewcode-back" href="../../../dicts.html#binarycpython.utils.dicts.multiply_float_values">[docs]</a><span class="k">def</span> <span class="nf">multiply_float_values</span><span class="p">(</span><span class="n">input_dict</span><span class="p">,</span> <span class="n">factor</span><span class="p">,</span> <span class="n">ignore</span><span class="o">=</span><span class="kc">None</span><span class="p">):</span>
<span class="sd">"""</span>
<span class="sd"> A function to recursively multiply values of a (nested) dictionary that are floats by a constant. Nested dictionaries call this function recursively.</span>
<span class="sd"> Args:</span>
-<span class="sd"> d: the dictionary</span>
-<span class="sd"> const: the constant that multiplies float values</span>
+<span class="sd"> input_dict: the dictionary</span>
+<span class="sd"> factor: the constant that multiplies float values</span>
<span class="sd"> """</span>
<span class="n">path</span> <span class="o">=</span> <span class="p">[]</span>
- <span class="n">_recursive_normalize_floats</span><span class="p">(</span><span class="n">path</span><span class="p">,</span> <span class="n">d</span><span class="p">,</span> <span class="n">const</span><span class="p">,</span> <span class="n">parent</span><span class="o">=</span><span class="n">d</span><span class="p">,</span> <span class="n">ignore</span><span class="o">=</span><span class="n">ignore</span><span class="p">)</span></div>
+ <span class="n">_recursive_normalize_floats</span><span class="p">(</span><span class="n">path</span><span class="p">,</span> <span class="n">input_dict</span><span class="p">,</span> <span class="n">factor</span><span class="p">,</span> <span class="n">parent</span><span class="o">=</span><span class="n">input_dict</span><span class="p">,</span> <span class="n">ignore</span><span class="o">=</span><span class="n">ignore</span><span class="p">)</span></div>
<div class="viewcode-block" id="subtract_dicts"><a class="viewcode-back" href="../../../dicts.html#binarycpython.utils.dicts.subtract_dicts">[docs]</a><span class="k">def</span> <span class="nf">subtract_dicts</span><span class="p">(</span><span class="n">dict_1</span><span class="p">:</span> <span class="nb">dict</span><span class="p">,</span> <span class="n">dict_2</span><span class="p">:</span> <span class="nb">dict</span><span class="p">)</span> <span class="o">-></span> <span class="nb">dict</span><span class="p">:</span>
@@ -281,15 +302,12 @@
<span class="sd"> dict_2: second dictionary</span>
<span class="sd"> Returns:</span>
-<span class="sd"> Subtracted dictionary, i.e. ``dict_1 - dict_2`` </span>
+<span class="sd"> Subtracted dictionary, i.e. ``dict_1 - dict_2``</span>
<span class="sd"> """</span>
<span class="c1"># Set up new dict</span>
<span class="n">new_dict</span> <span class="o">=</span> <span class="p">{}</span>
- <span class="c1"># Define allowed numerical types</span>
- <span class="n">ALLOWED_NUMERICAL_TYPES</span> <span class="o">=</span> <span class="p">(</span><span class="nb">float</span><span class="p">,</span> <span class="nb">int</span><span class="p">,</span> <span class="n">np</span><span class="o">.</span><span class="n">float64</span><span class="p">)</span>
-
<span class="c1">#</span>
<span class="n">keys_1</span> <span class="o">=</span> <span class="n">dict_1</span><span class="o">.</span><span class="n">keys</span><span class="p">()</span>
<span class="n">keys_2</span> <span class="o">=</span> <span class="n">dict_2</span><span class="o">.</span><span class="n">keys</span><span class="p">()</span>
@@ -464,9 +482,15 @@
<span class="k">return</span> <span class="n">structure_dict</span></div>
-<div class="viewcode-block" id="count_keys_recursive"><a class="viewcode-back" href="../../../dicts.html#binarycpython.utils.dicts.count_keys_recursive">[docs]</a><span class="k">def</span> <span class="nf">count_keys_recursive</span><span class="p">(</span><span class="n">input_dict</span><span class="p">):</span>
+<div class="viewcode-block" id="count_keys_recursive"><a class="viewcode-back" href="../../../dicts.html#binarycpython.utils.dicts.count_keys_recursive">[docs]</a><span class="k">def</span> <span class="nf">count_keys_recursive</span><span class="p">(</span><span class="n">input_dict</span><span class="p">:</span> <span class="nb">dict</span><span class="p">)</span> <span class="o">-></span> <span class="nb">int</span><span class="p">:</span>
<span class="sd">"""</span>
-<span class="sd"> Function to count the total number of keys in a dictionary</span>
+<span class="sd"> Function to recursively count the total number of keys in a dictionary.</span>
+
+<span class="sd"> Args:</span>
+<span class="sd"> input_dict: dictionary that we want to know the total amount of keys from.</span>
+
+<span class="sd"> Returns:</span>
+<span class="sd"> local_count: total amount of keys within the input_dict.</span>
<span class="sd"> """</span>
<span class="n">local_count</span> <span class="o">=</span> <span class="mi">0</span>
@@ -474,6 +498,7 @@
<span class="n">local_count</span> <span class="o">+=</span> <span class="mi">1</span>
<span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">input_dict</span><span class="p">[</span><span class="n">key</span><span class="p">],</span> <span class="p">(</span><span class="nb">dict</span><span class="p">,</span> <span class="n">collections</span><span class="o">.</span><span class="n">OrderedDict</span><span class="p">)):</span>
<span class="n">local_count</span> <span class="o">+=</span> <span class="n">count_keys_recursive</span><span class="p">(</span><span class="n">input_dict</span><span class="p">[</span><span class="n">key</span><span class="p">])</span>
+
<span class="k">return</span> <span class="n">local_count</span></div>
@@ -532,8 +557,8 @@
<span class="c1"># If they keys are not the same, it depends on their type whether we still deal with them at all, or just raise an error</span>
<span class="k">if</span> <span class="ow">not</span> <span class="nb">type</span><span class="p">(</span><span class="n">dict_1</span><span class="p">[</span><span class="n">key</span><span class="p">])</span> <span class="ow">is</span> <span class="nb">type</span><span class="p">(</span><span class="n">dict_2</span><span class="p">[</span><span class="n">key</span><span class="p">]):</span>
<span class="c1"># Exceptions: numbers can be added</span>
- <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">dict_1</span><span class="p">[</span><span class="n">key</span><span class="p">],</span> <span class="p">(</span><span class="nb">int</span><span class="p">,</span> <span class="nb">float</span><span class="p">,</span> <span class="n">np</span><span class="o">.</span><span class="n">float64</span><span class="p">))</span> <span class="ow">and</span> <span class="nb">isinstance</span><span class="p">(</span>
- <span class="n">dict_2</span><span class="p">[</span><span class="n">key</span><span class="p">],</span> <span class="p">(</span><span class="nb">int</span><span class="p">,</span> <span class="nb">float</span><span class="p">,</span> <span class="n">np</span><span class="o">.</span><span class="n">float64</span><span class="p">)</span>
+ <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">dict_1</span><span class="p">[</span><span class="n">key</span><span class="p">],</span> <span class="n">ALLOWED_NUMERICAL_TYPES</span><span class="p">)</span> <span class="ow">and</span> <span class="nb">isinstance</span><span class="p">(</span>
+ <span class="n">dict_2</span><span class="p">[</span><span class="n">key</span><span class="p">],</span> <span class="n">ALLOWED_NUMERICAL_TYPES</span>
<span class="p">):</span>
<span class="n">new_dict</span><span class="p">[</span><span class="n">key</span><span class="p">]</span> <span class="o">=</span> <span class="n">dict_1</span><span class="p">[</span><span class="n">key</span><span class="p">]</span> <span class="o">+</span> <span class="n">dict_2</span><span class="p">[</span><span class="n">key</span><span class="p">]</span>
@@ -685,9 +710,7 @@
<span class="c1"># See whether the types are actually the same</span>
<span class="k">if</span> <span class="ow">not</span> <span class="nb">type</span><span class="p">(</span><span class="n">dict_1</span><span class="p">[</span><span class="n">key</span><span class="p">])</span> <span class="ow">is</span> <span class="nb">type</span><span class="p">(</span><span class="n">dict_2</span><span class="p">[</span><span class="n">key</span><span class="p">]):</span>
<span class="c1"># Exceptions:</span>
- <span class="k">if</span> <span class="p">(</span><span class="nb">type</span><span class="p">(</span><span class="n">dict_1</span><span class="p">[</span><span class="n">key</span><span class="p">])</span> <span class="ow">in</span> <span class="p">[</span><span class="nb">int</span><span class="p">,</span> <span class="nb">float</span><span class="p">])</span> <span class="ow">and</span> <span class="p">(</span>
- <span class="nb">type</span><span class="p">(</span><span class="n">dict_2</span><span class="p">[</span><span class="n">key</span><span class="p">])</span> <span class="ow">in</span> <span class="p">[</span><span class="nb">int</span><span class="p">,</span> <span class="nb">float</span><span class="p">]</span>
- <span class="p">):</span>
+ <span class="k">if</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">dict_1</span><span class="p">[</span><span class="n">key</span><span class="p">],</span> <span class="n">ALLOWED_NUMERICAL_TYPES</span><span class="p">)</span> <span class="ow">and</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">dict_2</span><span class="p">[</span><span class="n">key</span><span class="p">],</span> <span class="n">ALLOWED_NUMERICAL_TYPES</span><span class="p">):</span>
<span class="n">new_dict</span><span class="p">[</span><span class="n">key</span><span class="p">]</span> <span class="o">=</span> <span class="n">dict_2</span><span class="p">[</span><span class="n">key</span><span class="p">]</span>
<span class="k">else</span><span class="p">:</span>
@@ -716,11 +739,20 @@
<span class="k">return</span> <span class="n">new_dict</span></div>
-<div class="viewcode-block" id="multiply_values_dict"><a class="viewcode-back" href="../../../dicts.html#binarycpython.utils.dicts.multiply_values_dict">[docs]</a><span class="k">def</span> <span class="nf">multiply_values_dict</span><span class="p">(</span><span class="n">input_dict</span><span class="p">,</span> <span class="n">factor</span><span class="p">):</span>
+<div class="viewcode-block" id="multiply_values_dict"><a class="viewcode-back" href="../../../dicts.html#binarycpython.utils.dicts.multiply_values_dict">[docs]</a><span class="k">def</span> <span class="nf">multiply_values_dict</span><span class="p">(</span><span class="n">input_dict</span><span class="p">:</span> <span class="nb">dict</span><span class="p">,</span> <span class="n">factor</span><span class="p">:</span> <span class="n">UNION_ALLOWED_NUMERICAL_TYPES</span><span class="p">):</span>
<span class="sd">"""</span>
<span class="sd"> Function that goes over dictionary recursively and multiplies the value if possible by a factor</span>
-<span class="sd"> If the key equals "general_info", the multiplication gets skipped</span>
+<span class="sd"> If the key equals "general_info", the multiplication gets skipped.</span>
+
+<span class="sd"> This function changes the values in-place, so the original dict is modified</span>
+
+<span class="sd"> Args:</span>
+<span class="sd"> input_dict: dictionary of which we want to multiply the values by <factor></span>
+<span class="sd"> factor: factor that we want to multiply the values with</span>
+
+<span class="sd"> Returns:</span>
+<span class="sd"> multiplied_dict: dict containing the multiplied keys. This is the same object as we passed as input.</span>
<span class="sd"> """</span>
<span class="k">for</span> <span class="n">key</span> <span class="ow">in</span> <span class="n">input_dict</span><span class="p">:</span>
@@ -734,7 +766,7 @@
<span class="k">return</span> <span class="n">input_dict</span></div>
-<div class="viewcode-block" id="custom_sort_dict"><a class="viewcode-back" href="../../../dicts.html#binarycpython.utils.dicts.custom_sort_dict">[docs]</a><span class="k">def</span> <span class="nf">custom_sort_dict</span><span class="p">(</span><span class="n">input_dict</span><span class="p">):</span>
+<div class="viewcode-block" id="custom_sort_dict"><a class="viewcode-back" href="../../../dicts.html#binarycpython.utils.dicts.custom_sort_dict">[docs]</a><span class="k">def</span> <span class="nf">custom_sort_dict</span><span class="p">(</span><span class="n">input_dict</span><span class="p">:</span> <span class="nb">dict</span><span class="p">)</span> <span class="o">-></span> <span class="nb">dict</span><span class="p">:</span>
<span class="sd">"""</span>
<span class="sd"> Returns a dictionary that is ordered, but can handle numbers better than normal OrderedDict</span>
@@ -744,6 +776,9 @@
<span class="sd"> This is done until all the keys are sorted.</span>
<span class="sd"> All objects other than dictionary types are directly return as they are</span>
+
+<span class="sd"> Args:</span>
+<span class="sd"> input_dict: object which will be sorted (and returned as a new object) if its a dictionary, otherwise it will be returned without change.</span>
<span class="sd"> """</span>
<span class="c1"># If the new input is a dictionary, then try to sort it</span>
@@ -873,16 +908,24 @@
<span class="k">return</span> <span class="n">opts</span></div>
-<div class="viewcode-block" id="normalize_dict"><a class="viewcode-back" href="../../../dicts.html#binarycpython.utils.dicts.normalize_dict">[docs]</a><span class="k">def</span> <span class="nf">normalize_dict</span><span class="p">(</span><span class="n">result_dict</span><span class="p">):</span>
+<div class="viewcode-block" id="normalize_dict"><a class="viewcode-back" href="../../../dicts.html#binarycpython.utils.dicts.normalize_dict">[docs]</a><span class="k">def</span> <span class="nf">normalize_dict</span><span class="p">(</span><span class="n">result_dict</span><span class="p">:</span> <span class="nb">dict</span><span class="p">)</span> <span class="o">-></span> <span class="nb">dict</span><span class="p">:</span>
<span class="sd">"""</span>
-<span class="sd"> Function to normalise a dictionary</span>
+<span class="sd"> Function to normalise a dictionary by summing all the values and dividing each term by the total. Designed for dictionary containing only positive values.</span>
+
+<span class="sd"> Args:</span>
+<span class="sd"> result_dict: dictionary where values should be positive number objects</span>
+
+<span class="sd"> Returns:</span>
+<span class="sd"> normalized_dict: dictionary where the values are normalised to sum to 1</span>
<span class="sd"> """</span>
+ <span class="n">normalized_dict</span> <span class="o">=</span> <span class="p">{}</span>
+
<span class="n">sum_result</span> <span class="o">=</span> <span class="nb">sum</span><span class="p">(</span><span class="nb">list</span><span class="p">(</span><span class="n">result_dict</span><span class="o">.</span><span class="n">values</span><span class="p">()))</span>
<span class="k">for</span> <span class="n">key</span> <span class="ow">in</span> <span class="n">result_dict</span><span class="o">.</span><span class="n">keys</span><span class="p">():</span>
- <span class="n">result_dict</span><span class="p">[</span><span class="n">key</span><span class="p">]</span> <span class="o">=</span> <span class="n">result_dict</span><span class="p">[</span><span class="n">key</span><span class="p">]</span> <span class="o">/</span> <span class="n">sum_result</span>
+ <span class="n">normalized_dict</span><span class="p">[</span><span class="n">key</span><span class="p">]</span> <span class="o">=</span> <span class="n">result_dict</span><span class="p">[</span><span class="n">key</span><span class="p">]</span> <span class="o">/</span> <span class="n">sum_result</span>
- <span class="k">return</span> <span class="n">result_dict</span></div>
+ <span class="k">return</span> <span class="n">normalized_dict</span></div>
</pre></div>
</div>
@@ -900,7 +943,7 @@
provided by <a href="https://readthedocs.org">Read the Docs</a>.
<br><br>
-Generated on binarycpython git branch: development_0.9.3/2.2.1 git revision 65c361290c607d015366bca40731b634b361cfa0 url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c-python/-/tree/development_0.9.3/2.2.1">git url</a>.
+Generated on binarycpython git branch: development_0.9.3/2.2.1 git revision 7e2b822d04dcc5482eabcc79ac1fe76bc42a6ece url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c-python/-/tree/development_0.9.3/2.2.1">git url</a>.
<br><br>
Using binary_c with bit branch branch_david: git revision: "5845:20220107:201620bd7" url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c/-/tree/branch_david">git url</a>.
diff --git a/docs/build/html/_modules/binarycpython/utils/ensemble.html b/docs/build/html/_modules/binarycpython/utils/ensemble.html
index ed4d9eb72..23e5c2120 100644
--- a/docs/build/html/_modules/binarycpython/utils/ensemble.html
+++ b/docs/build/html/_modules/binarycpython/utils/ensemble.html
@@ -270,11 +270,11 @@
<span class="c1"># data = recursive_change_key_to_float(data) # 61s</span>
<span class="n">data</span> <span class="o">=</span> <span class="n">keys_to_floats</span><span class="p">(</span><span class="n">data</span><span class="p">)</span> <span class="c1"># 6.94s</span>
- <span class="k">if</span> <span class="n">timing</span><span class="p">:</span>
- <span class="nb">print</span><span class="p">(</span>
- <span class="s2">"</span><span class="se">\n\n</span><span class="s2">Took </span><span class="si">{}</span><span class="s2"> s to convert floats</span><span class="se">\n\n</span><span class="s2">"</span><span class="o">.</span><span class="n">format</span><span class="p">(</span><span class="n">time</span><span class="o">.</span><span class="n">time</span><span class="p">()</span> <span class="o">-</span> <span class="n">tstart</span><span class="p">),</span>
- <span class="n">flush</span><span class="o">=</span><span class="kc">True</span><span class="p">,</span>
- <span class="p">)</span>
+ <span class="k">if</span> <span class="n">timing</span><span class="p">:</span>
+ <span class="nb">print</span><span class="p">(</span>
+ <span class="s2">"</span><span class="se">\n\n</span><span class="s2">Took </span><span class="si">{}</span><span class="s2"> s to convert floats</span><span class="se">\n\n</span><span class="s2">"</span><span class="o">.</span><span class="n">format</span><span class="p">(</span><span class="n">time</span><span class="o">.</span><span class="n">time</span><span class="p">()</span> <span class="o">-</span> <span class="n">tstart</span><span class="p">),</span>
+ <span class="n">flush</span><span class="o">=</span><span class="kc">True</span><span class="p">,</span>
+ <span class="p">)</span>
<span class="c1"># return data</span>
<span class="k">return</span> <span class="n">data</span></div>
@@ -337,10 +337,10 @@
<span class="sd"> raw_output: raw output of the ensemble dump by binary_c</span>
<span class="sd"> Returns:</span>
-<span class="sd"> json.loads(raw_output, cls=binarycDecoder)</span>
+<span class="sd"> json.loads(raw_output, cls=BinarycDecoder)</span>
<span class="sd"> """</span>
- <span class="k">return</span> <span class="n">json</span><span class="o">.</span><span class="n">loads</span><span class="p">(</span><span class="n">raw_output</span><span class="p">,</span> <span class="bp">cls</span><span class="o">=</span><span class="n">binarycDecoder</span><span class="p">)</span></div>
+ <span class="k">return</span> <span class="n">json</span><span class="o">.</span><span class="n">loads</span><span class="p">(</span><span class="n">raw_output</span><span class="p">,</span> <span class="bp">cls</span><span class="o">=</span><span class="n">BinarycDecoder</span><span class="p">)</span></div>
<div class="viewcode-block" id="binaryc_json_serializer"><a class="viewcode-back" href="../../../ensemble.html#binarycpython.utils.ensemble.binaryc_json_serializer">[docs]</a><span class="k">def</span> <span class="nf">binaryc_json_serializer</span><span class="p">(</span><span class="n">obj</span><span class="p">:</span> <span class="n">Any</span><span class="p">)</span> <span class="o">-></span> <span class="n">Any</span><span class="p">:</span>
@@ -362,12 +362,12 @@
<span class="k">return</span> <span class="n">obj</span></div>
-<div class="viewcode-block" id="binarycDecoder"><a class="viewcode-back" href="../../../ensemble.html#binarycpython.utils.ensemble.binarycDecoder">[docs]</a><span class="k">class</span> <span class="nc">binarycDecoder</span><span class="p">(</span><span class="n">json</span><span class="o">.</span><span class="n">JSONDecoder</span><span class="p">):</span>
+<div class="viewcode-block" id="BinarycDecoder"><a class="viewcode-back" href="../../../ensemble.html#binarycpython.utils.ensemble.BinarycDecoder">[docs]</a><span class="k">class</span> <span class="nc">BinarycDecoder</span><span class="p">(</span><span class="n">json</span><span class="o">.</span><span class="n">JSONDecoder</span><span class="p">):</span>
<span class="sd">"""</span>
<span class="sd"> Custom decoder to transform the numbers that are strings to actual floats</span>
<span class="sd"> """</span>
-<div class="viewcode-block" id="binarycDecoder.decode"><a class="viewcode-back" href="../../../ensemble.html#binarycpython.utils.ensemble.binarycDecoder.decode">[docs]</a> <span class="k">def</span> <span class="nf">decode</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">s</span><span class="p">):</span>
+<div class="viewcode-block" id="BinarycDecoder.decode"><a class="viewcode-back" href="../../../ensemble.html#binarycpython.utils.ensemble.BinarycDecoder.decode">[docs]</a> <span class="k">def</span> <span class="nf">decode</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">s</span><span class="p">):</span>
<span class="sd">"""</span>
<span class="sd"> Entry point function for decoding</span>
<span class="sd"> """</span>
@@ -400,15 +400,16 @@
<span class="k">return</span> <span class="n">o</span></div>
-<div class="viewcode-block" id="BinaryCEncoder"><a class="viewcode-back" href="../../../ensemble.html#binarycpython.utils.ensemble.BinaryCEncoder">[docs]</a><span class="k">class</span> <span class="nc">BinaryCEncoder</span><span class="p">(</span><span class="n">json</span><span class="o">.</span><span class="n">JSONEncoder</span><span class="p">):</span>
+<div class="viewcode-block" id="BinarycEncoder"><a class="viewcode-back" href="../../../ensemble.html#binarycpython.utils.ensemble.BinarycEncoder">[docs]</a><span class="k">class</span> <span class="nc">BinarycEncoder</span><span class="p">(</span><span class="n">json</span><span class="o">.</span><span class="n">JSONEncoder</span><span class="p">):</span>
<span class="sd">"""</span>
<span class="sd"> Encoding class function to attempt to convert things to strings.</span>
<span class="sd"> """</span>
-<div class="viewcode-block" id="BinaryCEncoder.default"><a class="viewcode-back" href="../../../ensemble.html#binarycpython.utils.ensemble.BinaryCEncoder.default">[docs]</a> <span class="k">def</span> <span class="nf">default</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">o</span><span class="p">):</span>
+<div class="viewcode-block" id="BinarycEncoder.default"><a class="viewcode-back" href="../../../ensemble.html#binarycpython.utils.ensemble.BinarycEncoder.default">[docs]</a> <span class="k">def</span> <span class="nf">default</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">o</span><span class="p">):</span>
<span class="sd">"""</span>
<span class="sd"> Converting function. Well, could be more precise. look at the JSON module</span>
<span class="sd"> """</span>
+
<span class="k">try</span><span class="p">:</span>
<span class="n">str_repr</span> <span class="o">=</span> <span class="nb">str</span><span class="p">(</span><span class="n">o</span><span class="p">)</span>
<span class="k">except</span> <span class="ne">TypeError</span><span class="p">:</span>
@@ -467,7 +468,7 @@
provided by <a href="https://readthedocs.org">Read the Docs</a>.
<br><br>
-Generated on binarycpython git branch: development_0.9.3/2.2.1 git revision 65c361290c607d015366bca40731b634b361cfa0 url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c-python/-/tree/development_0.9.3/2.2.1">git url</a>.
+Generated on binarycpython git branch: development_0.9.3/2.2.1 git revision 7e2b822d04dcc5482eabcc79ac1fe76bc42a6ece url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c-python/-/tree/development_0.9.3/2.2.1">git url</a>.
<br><br>
Using binary_c with bit branch branch_david: git revision: "5845:20220107:201620bd7" url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c/-/tree/branch_david">git url</a>.
diff --git a/docs/build/html/_modules/binarycpython/utils/functions.html b/docs/build/html/_modules/binarycpython/utils/functions.html
index 5bda28242..2c2a85d90 100644
--- a/docs/build/html/_modules/binarycpython/utils/functions.html
+++ b/docs/build/html/_modules/binarycpython/utils/functions.html
@@ -1287,7 +1287,7 @@
provided by <a href="https://readthedocs.org">Read the Docs</a>.
<br><br>
-Generated on binarycpython git branch: development_0.9.3/2.2.1 git revision 65c361290c607d015366bca40731b634b361cfa0 url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c-python/-/tree/development_0.9.3/2.2.1">git url</a>.
+Generated on binarycpython git branch: development_0.9.3/2.2.1 git revision 7e2b822d04dcc5482eabcc79ac1fe76bc42a6ece url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c-python/-/tree/development_0.9.3/2.2.1">git url</a>.
<br><br>
Using binary_c with bit branch branch_david: git revision: "5845:20220107:201620bd7" url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c/-/tree/branch_david">git url</a>.
diff --git a/docs/build/html/_modules/binarycpython/utils/grid.html b/docs/build/html/_modules/binarycpython/utils/grid.html
index 0fb0d4c0c..16be3244b 100644
--- a/docs/build/html/_modules/binarycpython/utils/grid.html
+++ b/docs/build/html/_modules/binarycpython/utils/grid.html
@@ -1611,13 +1611,13 @@
<span class="c1">######################</span>
<span class="c1"># Print status of runs</span>
<span class="c1"># save the current time (used often)</span>
- <span class="n">now</span> <span class="o">=</span> <span class="n">time</span><span class="o">.</span><span class="n">time</span><span class="p">()</span>
+ <span class="n">time_now</span> <span class="o">=</span> <span class="n">time</span><span class="o">.</span><span class="n">time</span><span class="p">()</span>
<span class="c1"># update memory use stats every log_dt seconds (not every time, this is likely a bit expensive)</span>
- <span class="k">if</span> <span class="n">now</span> <span class="o">></span> <span class="n">next_mem_update_time</span><span class="p">:</span>
+ <span class="k">if</span> <span class="n">time_now</span> <span class="o">></span> <span class="n">next_mem_update_time</span><span class="p">:</span>
<span class="n">m</span> <span class="o">=</span> <span class="n">mem_use</span><span class="p">()</span>
<span class="bp">self</span><span class="o">.</span><span class="n">shared_memory</span><span class="p">[</span><span class="s2">"memory_use_per_thread"</span><span class="p">][</span><span class="n">ID</span><span class="p">]</span> <span class="o">=</span> <span class="n">m</span>
- <span class="n">next_mem_update_time</span> <span class="o">=</span> <span class="n">now</span> <span class="o">+</span> <span class="bp">self</span><span class="o">.</span><span class="n">grid_options</span><span class="p">[</span><span class="s2">"log_dt"</span><span class="p">]</span>
+ <span class="n">next_mem_update_time</span> <span class="o">=</span> <span class="n">time_now</span> <span class="o">+</span> <span class="bp">self</span><span class="o">.</span><span class="n">grid_options</span><span class="p">[</span><span class="s2">"log_dt"</span><span class="p">]</span>
<span class="k">if</span> <span class="n">m</span> <span class="o">></span> <span class="bp">self</span><span class="o">.</span><span class="n">shared_memory</span><span class="p">[</span><span class="s2">"max_memory_use_per_thread"</span><span class="p">][</span><span class="n">ID</span><span class="p">]:</span>
<span class="bp">self</span><span class="o">.</span><span class="n">shared_memory</span><span class="p">[</span><span class="s2">"max_memory_use_per_thread"</span><span class="p">][</span><span class="n">ID</span><span class="p">]</span> <span class="o">=</span> <span class="n">m</span>
@@ -1628,16 +1628,16 @@
<span class="c1"># Check if we need to log info again</span>
<span class="c1"># TODO: Check if we can put this functionality elsewhere</span>
- <span class="k">if</span> <span class="n">now</span> <span class="o">></span> <span class="n">next_log_time</span><span class="p">:</span>
+ <span class="k">if</span> <span class="n">time_now</span> <span class="o">></span> <span class="n">next_log_time</span><span class="p">:</span>
<span class="c1"># we have exceeded the next log time : output and update timers</span>
<span class="c1"># Lock the threads. TODO: Do we need to release this?</span>
<span class="n">lock</span> <span class="o">=</span> <span class="n">multiprocessing</span><span class="o">.</span><span class="n">Lock</span><span class="p">()</span>
<span class="c1"># Do the printing itself</span>
- <span class="bp">self</span><span class="o">.</span><span class="n">vb1print</span><span class="p">(</span><span class="n">ID</span><span class="p">,</span> <span class="n">now</span><span class="p">,</span> <span class="n">system_number</span><span class="p">,</span> <span class="n">system_dict</span><span class="p">)</span>
+ <span class="bp">self</span><span class="o">.</span><span class="n">vb1print</span><span class="p">(</span><span class="n">ID</span><span class="p">,</span> <span class="n">time_now</span><span class="p">,</span> <span class="n">system_number</span><span class="p">,</span> <span class="n">system_dict</span><span class="p">)</span>
<span class="c1"># Set some values for next time</span>
- <span class="n">next_log_time</span> <span class="o">=</span> <span class="n">now</span> <span class="o">+</span> <span class="bp">self</span><span class="o">.</span><span class="n">grid_options</span><span class="p">[</span><span class="s2">"log_dt"</span><span class="p">]</span>
+ <span class="n">next_log_time</span> <span class="o">=</span> <span class="n">time_now</span> <span class="o">+</span> <span class="bp">self</span><span class="o">.</span><span class="n">grid_options</span><span class="p">[</span><span class="s2">"log_dt"</span><span class="p">]</span>
<span class="c1"># print("PREV ",self.shared_memory["prev_log_time"])</span>
<span class="c1"># print("N LOG STATS",self.shared_memory["n_saved_log_stats"].value)</span>
@@ -1655,7 +1655,7 @@
<span class="p">]</span>
<span class="c1"># set the current time and system number</span>
- <span class="bp">self</span><span class="o">.</span><span class="n">shared_memory</span><span class="p">[</span><span class="s2">"prev_log_time"</span><span class="p">][</span><span class="mi">0</span><span class="p">]</span> <span class="o">=</span> <span class="n">now</span>
+ <span class="bp">self</span><span class="o">.</span><span class="n">shared_memory</span><span class="p">[</span><span class="s2">"prev_log_time"</span><span class="p">][</span><span class="mi">0</span><span class="p">]</span> <span class="o">=</span> <span class="n">time_now</span>
<span class="bp">self</span><span class="o">.</span><span class="n">shared_memory</span><span class="p">[</span><span class="s2">"prev_log_system_number"</span><span class="p">][</span><span class="mi">0</span><span class="p">]</span> <span class="o">=</span> <span class="n">system_number</span>
<span class="c1"># increase the number of stats</span>
@@ -2469,7 +2469,7 @@
provided by <a href="https://readthedocs.org">Read the Docs</a>.
<br><br>
-Generated on binarycpython git branch: development_0.9.3/2.2.1 git revision 65c361290c607d015366bca40731b634b361cfa0 url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c-python/-/tree/development_0.9.3/2.2.1">git url</a>.
+Generated on binarycpython git branch: development_0.9.3/2.2.1 git revision 7e2b822d04dcc5482eabcc79ac1fe76bc42a6ece url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c-python/-/tree/development_0.9.3/2.2.1">git url</a>.
<br><br>
Using binary_c with bit branch branch_david: git revision: "5845:20220107:201620bd7" url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c/-/tree/branch_david">git url</a>.
diff --git a/docs/build/html/_modules/binarycpython/utils/plot_functions.html b/docs/build/html/_modules/binarycpython/utils/plot_functions.html
index edc3327bc..edac88deb 100644
--- a/docs/build/html/_modules/binarycpython/utils/plot_functions.html
+++ b/docs/build/html/_modules/binarycpython/utils/plot_functions.html
@@ -713,7 +713,7 @@
provided by <a href="https://readthedocs.org">Read the Docs</a>.
<br><br>
-Generated on binarycpython git branch: development_0.9.3/2.2.1 git revision 65c361290c607d015366bca40731b634b361cfa0 url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c-python/-/tree/development_0.9.3/2.2.1">git url</a>.
+Generated on binarycpython git branch: development_0.9.3/2.2.1 git revision 7e2b822d04dcc5482eabcc79ac1fe76bc42a6ece url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c-python/-/tree/development_0.9.3/2.2.1">git url</a>.
<br><br>
Using binary_c with bit branch branch_david: git revision: "5845:20220107:201620bd7" url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c/-/tree/branch_david">git url</a>.
diff --git a/docs/build/html/_modules/binarycpython/utils/population_extensions/HPC.html b/docs/build/html/_modules/binarycpython/utils/population_extensions/HPC.html
index 2b31fe576..8208ba4e0 100644
--- a/docs/build/html/_modules/binarycpython/utils/population_extensions/HPC.html
+++ b/docs/build/html/_modules/binarycpython/utils/population_extensions/HPC.html
@@ -802,7 +802,7 @@
provided by <a href="https://readthedocs.org">Read the Docs</a>.
<br><br>
-Generated on binarycpython git branch: development_0.9.3/2.2.1 git revision 65c361290c607d015366bca40731b634b361cfa0 url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c-python/-/tree/development_0.9.3/2.2.1">git url</a>.
+Generated on binarycpython git branch: development_0.9.3/2.2.1 git revision 7e2b822d04dcc5482eabcc79ac1fe76bc42a6ece url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c-python/-/tree/development_0.9.3/2.2.1">git url</a>.
<br><br>
Using binary_c with bit branch branch_david: git revision: "5845:20220107:201620bd7" url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c/-/tree/branch_david">git url</a>.
diff --git a/docs/build/html/_modules/binarycpython/utils/population_extensions/Moe_di_Stefano_2017.html b/docs/build/html/_modules/binarycpython/utils/population_extensions/Moe_di_Stefano_2017.html
index 07fb1cc45..b89f2b979 100644
--- a/docs/build/html/_modules/binarycpython/utils/population_extensions/Moe_di_Stefano_2017.html
+++ b/docs/build/html/_modules/binarycpython/utils/population_extensions/Moe_di_Stefano_2017.html
@@ -1317,7 +1317,7 @@
provided by <a href="https://readthedocs.org">Read the Docs</a>.
<br><br>
-Generated on binarycpython git branch: development_0.9.3/2.2.1 git revision 65c361290c607d015366bca40731b634b361cfa0 url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c-python/-/tree/development_0.9.3/2.2.1">git url</a>.
+Generated on binarycpython git branch: development_0.9.3/2.2.1 git revision 7e2b822d04dcc5482eabcc79ac1fe76bc42a6ece url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c-python/-/tree/development_0.9.3/2.2.1">git url</a>.
<br><br>
Using binary_c with bit branch branch_david: git revision: "5845:20220107:201620bd7" url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c/-/tree/branch_david">git url</a>.
diff --git a/docs/build/html/_modules/binarycpython/utils/population_extensions/analytics.html b/docs/build/html/_modules/binarycpython/utils/population_extensions/analytics.html
index 0c630b38a..9b3e86004 100644
--- a/docs/build/html/_modules/binarycpython/utils/population_extensions/analytics.html
+++ b/docs/build/html/_modules/binarycpython/utils/population_extensions/analytics.html
@@ -205,7 +205,7 @@
provided by <a href="https://readthedocs.org">Read the Docs</a>.
<br><br>
-Generated on binarycpython git branch: development_0.9.3/2.2.1 git revision 65c361290c607d015366bca40731b634b361cfa0 url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c-python/-/tree/development_0.9.3/2.2.1">git url</a>.
+Generated on binarycpython git branch: development_0.9.3/2.2.1 git revision 7e2b822d04dcc5482eabcc79ac1fe76bc42a6ece url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c-python/-/tree/development_0.9.3/2.2.1">git url</a>.
<br><br>
Using binary_c with bit branch branch_david: git revision: "5845:20220107:201620bd7" url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c/-/tree/branch_david">git url</a>.
diff --git a/docs/build/html/_modules/binarycpython/utils/population_extensions/cache.html b/docs/build/html/_modules/binarycpython/utils/population_extensions/cache.html
index fcf688fd0..c102d48a5 100644
--- a/docs/build/html/_modules/binarycpython/utils/population_extensions/cache.html
+++ b/docs/build/html/_modules/binarycpython/utils/population_extensions/cache.html
@@ -451,7 +451,7 @@
provided by <a href="https://readthedocs.org">Read the Docs</a>.
<br><br>
-Generated on binarycpython git branch: development_0.9.3/2.2.1 git revision 65c361290c607d015366bca40731b634b361cfa0 url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c-python/-/tree/development_0.9.3/2.2.1">git url</a>.
+Generated on binarycpython git branch: development_0.9.3/2.2.1 git revision 7e2b822d04dcc5482eabcc79ac1fe76bc42a6ece url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c-python/-/tree/development_0.9.3/2.2.1">git url</a>.
<br><br>
Using binary_c with bit branch branch_david: git revision: "5845:20220107:201620bd7" url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c/-/tree/branch_david">git url</a>.
diff --git a/docs/build/html/_modules/binarycpython/utils/population_extensions/condor.html b/docs/build/html/_modules/binarycpython/utils/population_extensions/condor.html
index a110a2bd7..2da637e8e 100644
--- a/docs/build/html/_modules/binarycpython/utils/population_extensions/condor.html
+++ b/docs/build/html/_modules/binarycpython/utils/population_extensions/condor.html
@@ -641,7 +641,7 @@
provided by <a href="https://readthedocs.org">Read the Docs</a>.
<br><br>
-Generated on binarycpython git branch: development_0.9.3/2.2.1 git revision 65c361290c607d015366bca40731b634b361cfa0 url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c-python/-/tree/development_0.9.3/2.2.1">git url</a>.
+Generated on binarycpython git branch: development_0.9.3/2.2.1 git revision 7e2b822d04dcc5482eabcc79ac1fe76bc42a6ece url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c-python/-/tree/development_0.9.3/2.2.1">git url</a>.
<br><br>
Using binary_c with bit branch branch_david: git revision: "5845:20220107:201620bd7" url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c/-/tree/branch_david">git url</a>.
diff --git a/docs/build/html/_modules/binarycpython/utils/population_extensions/dataIO.html b/docs/build/html/_modules/binarycpython/utils/population_extensions/dataIO.html
index e9ad8cbd6..a816bf532 100644
--- a/docs/build/html/_modules/binarycpython/utils/population_extensions/dataIO.html
+++ b/docs/build/html/_modules/binarycpython/utils/population_extensions/dataIO.html
@@ -93,6 +93,7 @@
<span class="kn">from</span> <span class="nn">binarycpython.utils.ensemble</span> <span class="kn">import</span> <span class="p">(</span>
<span class="n">ensemble_file_type</span><span class="p">,</span>
+ <span class="n">ensemble_compression</span>
<span class="p">)</span>
<span class="kn">from</span> <span class="nn">binarycpython.utils.dicts</span> <span class="kn">import</span> <span class="p">(</span>
<span class="n">merge_dicts</span><span class="p">,</span>
@@ -431,8 +432,8 @@
<span class="p">)</span>
<span class="bp">self</span><span class="o">.</span><span class="n">exit</span><span class="p">(</span><span class="n">code</span><span class="o">=</span><span class="mi">1</span><span class="p">)</span>
<span class="k">else</span><span class="p">:</span>
- <span class="n">f</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">open</span><span class="p">(</span><span class="n">output_file</span><span class="p">,</span> <span class="s2">"wt"</span><span class="p">,</span> <span class="n">encoding</span><span class="o">=</span><span class="n">encoding</span><span class="p">)</span>
<span class="k">if</span> <span class="n">file_type</span> <span class="o">==</span> <span class="s2">"JSON"</span><span class="p">:</span>
+ <span class="n">f</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">open</span><span class="p">(</span><span class="n">output_file</span><span class="p">,</span> <span class="s2">"wt"</span><span class="p">,</span> <span class="n">encoding</span><span class="o">=</span><span class="n">encoding</span><span class="p">)</span>
<span class="c1"># JSON output</span>
<span class="n">f</span><span class="o">.</span><span class="n">write</span><span class="p">(</span>
<span class="n">json</span><span class="o">.</span><span class="n">dumps</span><span class="p">(</span>
@@ -443,8 +444,11 @@
<span class="p">)</span>
<span class="p">)</span>
<span class="k">elif</span> <span class="n">file_type</span> <span class="o">==</span> <span class="s2">"msgpack"</span><span class="p">:</span>
+ <span class="n">f</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">open</span><span class="p">(</span><span class="n">output_file</span><span class="p">,</span> <span class="s2">"w"</span><span class="p">)</span> <span class="c1"># TODO: i think something is going wrong here. not sure but doing msgpack and .gz e.g gives an error about str input rather than bytes. i think this is because the self.open does not take into account that the msgpack stream requires different properties.</span>
+
<span class="c1"># msgpack output</span>
<span class="n">msgpack</span><span class="o">.</span><span class="n">dump</span><span class="p">(</span><span class="n">data</span><span class="p">,</span> <span class="n">f</span><span class="p">)</span>
+
<span class="n">f</span><span class="o">.</span><span class="n">close</span><span class="p">()</span>
<span class="nb">print</span><span class="p">(</span>
@@ -883,7 +887,7 @@
provided by <a href="https://readthedocs.org">Read the Docs</a>.
<br><br>
-Generated on binarycpython git branch: development_0.9.3/2.2.1 git revision 65c361290c607d015366bca40731b634b361cfa0 url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c-python/-/tree/development_0.9.3/2.2.1">git url</a>.
+Generated on binarycpython git branch: development_0.9.3/2.2.1 git revision 7e2b822d04dcc5482eabcc79ac1fe76bc42a6ece url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c-python/-/tree/development_0.9.3/2.2.1">git url</a>.
<br><br>
Using binary_c with bit branch branch_david: git revision: "5845:20220107:201620bd7" url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c/-/tree/branch_david">git url</a>.
diff --git a/docs/build/html/_modules/binarycpython/utils/population_extensions/distribution_functions.html b/docs/build/html/_modules/binarycpython/utils/population_extensions/distribution_functions.html
index 7106293a7..3e30a26ef 100644
--- a/docs/build/html/_modules/binarycpython/utils/population_extensions/distribution_functions.html
+++ b/docs/build/html/_modules/binarycpython/utils/population_extensions/distribution_functions.html
@@ -2400,7 +2400,7 @@
provided by <a href="https://readthedocs.org">Read the Docs</a>.
<br><br>
-Generated on binarycpython git branch: development_0.9.3/2.2.1 git revision 65c361290c607d015366bca40731b634b361cfa0 url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c-python/-/tree/development_0.9.3/2.2.1">git url</a>.
+Generated on binarycpython git branch: development_0.9.3/2.2.1 git revision 7e2b822d04dcc5482eabcc79ac1fe76bc42a6ece url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c-python/-/tree/development_0.9.3/2.2.1">git url</a>.
<br><br>
Using binary_c with bit branch branch_david: git revision: "5845:20220107:201620bd7" url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c/-/tree/branch_david">git url</a>.
diff --git a/docs/build/html/_modules/binarycpython/utils/population_extensions/grid_logging.html b/docs/build/html/_modules/binarycpython/utils/population_extensions/grid_logging.html
index 75ce4cab8..054e1c661 100644
--- a/docs/build/html/_modules/binarycpython/utils/population_extensions/grid_logging.html
+++ b/docs/build/html/_modules/binarycpython/utils/population_extensions/grid_logging.html
@@ -552,7 +552,7 @@
provided by <a href="https://readthedocs.org">Read the Docs</a>.
<br><br>
-Generated on binarycpython git branch: development_0.9.3/2.2.1 git revision 65c361290c607d015366bca40731b634b361cfa0 url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c-python/-/tree/development_0.9.3/2.2.1">git url</a>.
+Generated on binarycpython git branch: development_0.9.3/2.2.1 git revision 7e2b822d04dcc5482eabcc79ac1fe76bc42a6ece url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c-python/-/tree/development_0.9.3/2.2.1">git url</a>.
<br><br>
Using binary_c with bit branch branch_david: git revision: "5845:20220107:201620bd7" url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c/-/tree/branch_david">git url</a>.
diff --git a/docs/build/html/_modules/binarycpython/utils/population_extensions/grid_options_defaults.html b/docs/build/html/_modules/binarycpython/utils/population_extensions/grid_options_defaults.html
index 1c17aec5f..226ea280d 100644
--- a/docs/build/html/_modules/binarycpython/utils/population_extensions/grid_options_defaults.html
+++ b/docs/build/html/_modules/binarycpython/utils/population_extensions/grid_options_defaults.html
@@ -713,7 +713,7 @@
provided by <a href="https://readthedocs.org">Read the Docs</a>.
<br><br>
-Generated on binarycpython git branch: development_0.9.3/2.2.1 git revision 65c361290c607d015366bca40731b634b361cfa0 url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c-python/-/tree/development_0.9.3/2.2.1">git url</a>.
+Generated on binarycpython git branch: development_0.9.3/2.2.1 git revision 7e2b822d04dcc5482eabcc79ac1fe76bc42a6ece url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c-python/-/tree/development_0.9.3/2.2.1">git url</a>.
<br><br>
Using binary_c with bit branch branch_david: git revision: "5845:20220107:201620bd7" url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c/-/tree/branch_david">git url</a>.
diff --git a/docs/build/html/_modules/binarycpython/utils/population_extensions/gridcode.html b/docs/build/html/_modules/binarycpython/utils/population_extensions/gridcode.html
index 484158709..2575ae263 100644
--- a/docs/build/html/_modules/binarycpython/utils/population_extensions/gridcode.html
+++ b/docs/build/html/_modules/binarycpython/utils/population_extensions/gridcode.html
@@ -180,8 +180,6 @@
<span class="s2">"import math</span><span class="se">\n</span><span class="s2">"</span><span class="p">,</span>
<span class="s2">"import numpy as np</span><span class="se">\n</span><span class="s2">"</span><span class="p">,</span>
<span class="s2">"from collections import OrderedDict</span><span class="se">\n</span><span class="s2">"</span><span class="p">,</span>
- <span class="s2">"from binarycpython.utils.distribution_functions import *</span><span class="se">\n</span><span class="s2">"</span><span class="p">,</span>
- <span class="s2">"from binarycpython.utils.spacing_functions import *</span><span class="se">\n</span><span class="s2">"</span><span class="p">,</span>
<span class="s2">"from binarycpython.utils.useful_funcs import *</span><span class="se">\n</span><span class="s2">"</span><span class="p">,</span>
<span class="s2">"import numba"</span> <span class="k">if</span> <span class="n">_numba</span> <span class="k">else</span> <span class="s2">""</span><span class="p">,</span>
<span class="s2">"</span><span class="se">\n\n</span><span class="s2">"</span><span class="p">,</span>
@@ -1075,7 +1073,7 @@
<span class="sd"> This is evaluated as a parameter and you can use it throughout</span>
<span class="sd"> the rest of the function</span>
-<span class="sd"> Examples:</span>
+<span class="sd"> Examples::</span>
<span class="sd"> name = 'lnM_1'</span>
<span class="sd"> parameter_name:</span>
@@ -1093,45 +1091,54 @@
<span class="sd"> Examples:</span>
<span class="sd"> longname = 'Primary mass'</span>
+
<span class="sd"> range:</span>
<span class="sd"> Range of values to take. Does not get used really, the samplerfunc is used to</span>
<span class="sd"> get the values from</span>
-<span class="sd"> Examples:</span>
+<span class="sd"> Examples::</span>
<span class="sd"> range = [math.log(m_min), math.log(m_max)]</span>
+
<span class="sd"> samplerfunc:</span>
<span class="sd"> Function returning a list or numpy array of samples spaced appropriately.</span>
<span class="sd"> You can either use a real function, or a string representation of a function call.</span>
-<span class="sd"> Examples:</span>
+<span class="sd"> Examples::</span>
<span class="sd"> samplerfunc = "self.const_linear(math.log(m_min), math.log(m_max), {})".format(resolution['M_1'])</span>
<span class="sd"> precode:</span>
<span class="sd"> Extra room for some code. This code will be evaluated within the loop of the</span>
<span class="sd"> sampling function (i.e. a value for lnM_1 is chosen already)</span>
-<span class="sd"> Examples:</span>
+<span class="sd"> Examples::</span>
<span class="sd"> precode = 'M_1=math.exp(lnM_1);'</span>
+
<span class="sd"> postcode:</span>
<span class="sd"> Code executed after the probability is calculated.</span>
+
<span class="sd"> probdist:</span>
<span class="sd"> Function determining the probability that gets assigned to the sampled parameter</span>
<span class="sd"> Examples:</span>
-<span class="sd"> probdist = 'Kroupa2001(M_1)*M_1'</span>
+<span class="sd"> probdist = 'self.Kroupa2001(M_1)*M_1'</span>
+
<span class="sd"> dphasevol:</span>
<span class="sd"> part of the parameter space that the total probability is calculated with. Put to -1</span>
<span class="sd"> if you want to ignore any dphasevol calculations and set the value to 1</span>
-<span class="sd"> Examples:</span>
+
+<span class="sd"> Examples::"</span>
<span class="sd"> dphasevol = 'dlnM_1'</span>
+
<span class="sd"> condition:</span>
<span class="sd"> condition that has to be met in order for the grid generation to continue</span>
-<span class="sd"> Examples:</span>
+
+<span class="sd"> Examples::</span>
<span class="sd"> condition = 'self.grid_options['binary']==1'</span>
+
<span class="sd"> gridtype:</span>
<span class="sd"> Method on how the value range is sampled. Can be either 'edge' (steps starting at</span>
<span class="sd"> the lower edge of the value range) or 'centred'</span>
-<span class="sd"> (steps starting at lower edge + 0.5 * stepsize).</span>
+<span class="sd"> (steps starting at ``lower edge + 0.5 * stepsize``).</span>
<span class="sd"> dry_parallel:</span>
<span class="sd"> If True, try to parallelize this variable in dry runs.</span>
@@ -1219,7 +1226,7 @@
provided by <a href="https://readthedocs.org">Read the Docs</a>.
<br><br>
-Generated on binarycpython git branch: development_0.9.3/2.2.1 git revision 65c361290c607d015366bca40731b634b361cfa0 url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c-python/-/tree/development_0.9.3/2.2.1">git url</a>.
+Generated on binarycpython git branch: development_0.9.3/2.2.1 git revision 7e2b822d04dcc5482eabcc79ac1fe76bc42a6ece url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c-python/-/tree/development_0.9.3/2.2.1">git url</a>.
<br><br>
Using binary_c with bit branch branch_david: git revision: "5845:20220107:201620bd7" url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c/-/tree/branch_david">git url</a>.
diff --git a/docs/build/html/_modules/binarycpython/utils/population_extensions/metadata.html b/docs/build/html/_modules/binarycpython/utils/population_extensions/metadata.html
index ae35b0677..fa4785533 100644
--- a/docs/build/html/_modules/binarycpython/utils/population_extensions/metadata.html
+++ b/docs/build/html/_modules/binarycpython/utils/population_extensions/metadata.html
@@ -234,7 +234,7 @@
provided by <a href="https://readthedocs.org">Read the Docs</a>.
<br><br>
-Generated on binarycpython git branch: development_0.9.3/2.2.1 git revision 65c361290c607d015366bca40731b634b361cfa0 url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c-python/-/tree/development_0.9.3/2.2.1">git url</a>.
+Generated on binarycpython git branch: development_0.9.3/2.2.1 git revision 7e2b822d04dcc5482eabcc79ac1fe76bc42a6ece url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c-python/-/tree/development_0.9.3/2.2.1">git url</a>.
<br><br>
Using binary_c with bit branch branch_david: git revision: "5845:20220107:201620bd7" url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c/-/tree/branch_david">git url</a>.
diff --git a/docs/build/html/_modules/binarycpython/utils/population_extensions/slurm.html b/docs/build/html/_modules/binarycpython/utils/population_extensions/slurm.html
index 3e8aeb960..3e649ba79 100644
--- a/docs/build/html/_modules/binarycpython/utils/population_extensions/slurm.html
+++ b/docs/build/html/_modules/binarycpython/utils/population_extensions/slurm.html
@@ -535,7 +535,7 @@
provided by <a href="https://readthedocs.org">Read the Docs</a>.
<br><br>
-Generated on binarycpython git branch: development_0.9.3/2.2.1 git revision 65c361290c607d015366bca40731b634b361cfa0 url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c-python/-/tree/development_0.9.3/2.2.1">git url</a>.
+Generated on binarycpython git branch: development_0.9.3/2.2.1 git revision 7e2b822d04dcc5482eabcc79ac1fe76bc42a6ece url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c-python/-/tree/development_0.9.3/2.2.1">git url</a>.
<br><br>
Using binary_c with bit branch branch_david: git revision: "5845:20220107:201620bd7" url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c/-/tree/branch_david">git url</a>.
diff --git a/docs/build/html/_modules/binarycpython/utils/population_extensions/spacing_functions.html b/docs/build/html/_modules/binarycpython/utils/population_extensions/spacing_functions.html
index 12e087273..385bee8e9 100644
--- a/docs/build/html/_modules/binarycpython/utils/population_extensions/spacing_functions.html
+++ b/docs/build/html/_modules/binarycpython/utils/population_extensions/spacing_functions.html
@@ -773,7 +773,7 @@
provided by <a href="https://readthedocs.org">Read the Docs</a>.
<br><br>
-Generated on binarycpython git branch: development_0.9.3/2.2.1 git revision 65c361290c607d015366bca40731b634b361cfa0 url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c-python/-/tree/development_0.9.3/2.2.1">git url</a>.
+Generated on binarycpython git branch: development_0.9.3/2.2.1 git revision 7e2b822d04dcc5482eabcc79ac1fe76bc42a6ece url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c-python/-/tree/development_0.9.3/2.2.1">git url</a>.
<br><br>
Using binary_c with bit branch branch_david: git revision: "5845:20220107:201620bd7" url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c/-/tree/branch_david">git url</a>.
diff --git a/docs/build/html/_modules/binarycpython/utils/population_extensions/version_info.html b/docs/build/html/_modules/binarycpython/utils/population_extensions/version_info.html
index 9e139fb70..44d4d8d9b 100644
--- a/docs/build/html/_modules/binarycpython/utils/population_extensions/version_info.html
+++ b/docs/build/html/_modules/binarycpython/utils/population_extensions/version_info.html
@@ -521,7 +521,7 @@
provided by <a href="https://readthedocs.org">Read the Docs</a>.
<br><br>
-Generated on binarycpython git branch: development_0.9.3/2.2.1 git revision 65c361290c607d015366bca40731b634b361cfa0 url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c-python/-/tree/development_0.9.3/2.2.1">git url</a>.
+Generated on binarycpython git branch: development_0.9.3/2.2.1 git revision 7e2b822d04dcc5482eabcc79ac1fe76bc42a6ece url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c-python/-/tree/development_0.9.3/2.2.1">git url</a>.
<br><br>
Using binary_c with bit branch branch_david: git revision: "5845:20220107:201620bd7" url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c/-/tree/branch_david">git url</a>.
diff --git a/docs/build/html/_modules/binarycpython/utils/run_system_wrapper.html b/docs/build/html/_modules/binarycpython/utils/run_system_wrapper.html
index b91380f03..6d93e5bf5 100644
--- a/docs/build/html/_modules/binarycpython/utils/run_system_wrapper.html
+++ b/docs/build/html/_modules/binarycpython/utils/run_system_wrapper.html
@@ -205,7 +205,7 @@
provided by <a href="https://readthedocs.org">Read the Docs</a>.
<br><br>
-Generated on binarycpython git branch: development_0.9.3/2.2.1 git revision 65c361290c607d015366bca40731b634b361cfa0 url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c-python/-/tree/development_0.9.3/2.2.1">git url</a>.
+Generated on binarycpython git branch: development_0.9.3/2.2.1 git revision 7e2b822d04dcc5482eabcc79ac1fe76bc42a6ece url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c-python/-/tree/development_0.9.3/2.2.1">git url</a>.
<br><br>
Using binary_c with bit branch branch_david: git revision: "5845:20220107:201620bd7" url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c/-/tree/branch_david">git url</a>.
diff --git a/docs/build/html/_modules/binarycpython/utils/useful_funcs.html b/docs/build/html/_modules/binarycpython/utils/useful_funcs.html
index 697cd34f5..64b1bc526 100644
--- a/docs/build/html/_modules/binarycpython/utils/useful_funcs.html
+++ b/docs/build/html/_modules/binarycpython/utils/useful_funcs.html
@@ -471,7 +471,7 @@
provided by <a href="https://readthedocs.org">Read the Docs</a>.
<br><br>
-Generated on binarycpython git branch: development_0.9.3/2.2.1 git revision 65c361290c607d015366bca40731b634b361cfa0 url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c-python/-/tree/development_0.9.3/2.2.1">git url</a>.
+Generated on binarycpython git branch: development_0.9.3/2.2.1 git revision 7e2b822d04dcc5482eabcc79ac1fe76bc42a6ece url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c-python/-/tree/development_0.9.3/2.2.1">git url</a>.
<br><br>
Using binary_c with bit branch branch_david: git revision: "5845:20220107:201620bd7" url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c/-/tree/branch_david">git url</a>.
diff --git a/docs/build/html/_modules/index.html b/docs/build/html/_modules/index.html
index b1c1d7561..d10dce7be 100644
--- a/docs/build/html/_modules/index.html
+++ b/docs/build/html/_modules/index.html
@@ -109,7 +109,7 @@
provided by <a href="https://readthedocs.org">Read the Docs</a>.
<br><br>
-Generated on binarycpython git branch: development_0.9.3/2.2.1 git revision 65c361290c607d015366bca40731b634b361cfa0 url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c-python/-/tree/development_0.9.3/2.2.1">git url</a>.
+Generated on binarycpython git branch: development_0.9.3/2.2.1 git revision 7e2b822d04dcc5482eabcc79ac1fe76bc42a6ece url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c-python/-/tree/development_0.9.3/2.2.1">git url</a>.
<br><br>
Using binary_c with bit branch branch_david: git revision: "5845:20220107:201620bd7" url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c/-/tree/branch_david">git url</a>.
diff --git a/docs/build/html/binary_c_parameters.html b/docs/build/html/binary_c_parameters.html
index cf4a3891a..f03f2b788 100644
--- a/docs/build/html/binary_c_parameters.html
+++ b/docs/build/html/binary_c_parameters.html
@@ -3506,7 +3506,7 @@
provided by <a href="https://readthedocs.org">Read the Docs</a>.
<br><br>
-Generated on binarycpython git branch: development_0.9.3/2.2.1 git revision 65c361290c607d015366bca40731b634b361cfa0 url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c-python/-/tree/development_0.9.3/2.2.1">git url</a>.
+Generated on binarycpython git branch: development_0.9.3/2.2.1 git revision 7e2b822d04dcc5482eabcc79ac1fe76bc42a6ece url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c-python/-/tree/development_0.9.3/2.2.1">git url</a>.
<br><br>
Using binary_c with bit branch branch_david: git revision: "5845:20220107:201620bd7" url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c/-/tree/branch_david">git url</a>.
diff --git a/docs/build/html/custom_logging_functions.html b/docs/build/html/custom_logging_functions.html
index e2980117f..1c2e6f741 100644
--- a/docs/build/html/custom_logging_functions.html
+++ b/docs/build/html/custom_logging_functions.html
@@ -329,7 +329,7 @@ I recommend using this in function in combination with a function that generates
provided by <a href="https://readthedocs.org">Read the Docs</a>.
<br><br>
-Generated on binarycpython git branch: development_0.9.3/2.2.1 git revision 65c361290c607d015366bca40731b634b361cfa0 url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c-python/-/tree/development_0.9.3/2.2.1">git url</a>.
+Generated on binarycpython git branch: development_0.9.3/2.2.1 git revision 7e2b822d04dcc5482eabcc79ac1fe76bc42a6ece url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c-python/-/tree/development_0.9.3/2.2.1">git url</a>.
<br><br>
Using binary_c with bit branch branch_david: git revision: "5845:20220107:201620bd7" url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c/-/tree/branch_david">git url</a>.
diff --git a/docs/build/html/dicts.html b/docs/build/html/dicts.html
index 60f104078..7399197fb 100644
--- a/docs/build/html/dicts.html
+++ b/docs/build/html/dicts.html
@@ -155,7 +155,18 @@ print(newdict)
<dl class="py function">
<dt class="sig sig-object py" id="binarycpython.utils.dicts.count_keys_recursive">
<span class="sig-prename descclassname"><span class="pre">binarycpython.utils.dicts.</span></span><span class="sig-name descname"><span class="pre">count_keys_recursive</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">input_dict</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="_modules/binarycpython/utils/dicts.html#count_keys_recursive"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#binarycpython.utils.dicts.count_keys_recursive" title="Permalink to this definition">ïƒ</a></dt>
-<dd><p>Function to count the total number of keys in a dictionary</p>
+<dd><p>Function to recursively count the total number of keys in a dictionary.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters</dt>
+<dd class="field-odd"><p><strong>input_dict</strong> (<code class="xref py py-class docutils literal notranslate"><span class="pre">dict</span></code>) – dictionary that we want to know the total amount of keys from.</p>
+</dd>
+<dt class="field-even">Returns</dt>
+<dd class="field-even"><p>total amount of keys within the input_dict.</p>
+</dd>
+<dt class="field-odd">Return type</dt>
+<dd class="field-odd"><p>local_count</p>
+</dd>
+</dl>
</dd></dl>
<dl class="py function">
@@ -167,6 +178,14 @@ Sort that list of type names. Then find the values that fit that type.
Sort those and append them to the sorted keys list.
This is done until all the keys are sorted.</p>
<p>All objects other than dictionary types are directly return as they are</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters</dt>
+<dd class="field-odd"><p><strong>input_dict</strong> (<code class="xref py py-class docutils literal notranslate"><span class="pre">dict</span></code>) – object which will be sorted (and returned as a new object) if its a dictionary, otherwise it will be returned without change.</p>
+</dd>
+<dt class="field-even">Return type</dt>
+<dd class="field-even"><p><code class="xref py py-class docutils literal notranslate"><span class="pre">dict</span></code></p>
+</dd>
+</dl>
</dd></dl>
<dl class="py function">
@@ -239,10 +258,23 @@ it will return the type of what the value would be in the input_dict</p>
<dl class="py function">
<dt class="sig sig-object py" id="binarycpython.utils.dicts.keys_to_floats">
-<span class="sig-prename descclassname"><span class="pre">binarycpython.utils.dicts.</span></span><span class="sig-name descname"><span class="pre">keys_to_floats</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">json_data</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="_modules/binarycpython/utils/dicts.html#keys_to_floats"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#binarycpython.utils.dicts.keys_to_floats" title="Permalink to this definition">ïƒ</a></dt>
+<span class="sig-prename descclassname"><span class="pre">binarycpython.utils.dicts.</span></span><span class="sig-name descname"><span class="pre">keys_to_floats</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">input_dict</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="_modules/binarycpython/utils/dicts.html#keys_to_floats"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#binarycpython.utils.dicts.keys_to_floats" title="Permalink to this definition">ïƒ</a></dt>
<dd><p>Function to convert all the keys of the dictionary to float to float</p>
-<p>we need to convert keys to floats:
-this is ~ a factor 10 faster than David’s recursive_change_key_to_float routine, probably because this version only does the float conversion, nothing else.</p>
+<dl class="simple">
+<dt>we need to convert keys to floats:</dt><dd><p>this is ~ a factor 10 faster than David’s <code class="docutils literal notranslate"><span class="pre">recursive_change_key_to_float</span></code> routine, probably because this version only does the float conversion, nothing else.</p>
+</dd>
+</dl>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters</dt>
+<dd class="field-odd"><p><strong>input_dict</strong> (<code class="xref py py-class docutils literal notranslate"><span class="pre">dict</span></code>) – dict of which we want to turn all the keys to float types if possible</p>
+</dd>
+<dt class="field-even">Returns</dt>
+<dd class="field-even"><p>dict of which the keys have been turned to float types where possible</p>
+</dd>
+<dt class="field-odd">Return type</dt>
+<dd class="field-odd"><p>new_dict</p>
+</dd>
+</dl>
</dd></dl>
<dl class="py function">
@@ -285,13 +317,13 @@ this is ~ a factor 10 faster than David’s recursive_change_key_to_float routin
<dl class="py function">
<dt class="sig sig-object py" id="binarycpython.utils.dicts.multiply_float_values">
-<span class="sig-prename descclassname"><span class="pre">binarycpython.utils.dicts.</span></span><span class="sig-name descname"><span class="pre">multiply_float_values</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">d</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">const</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">ignore</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="_modules/binarycpython/utils/dicts.html#multiply_float_values"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#binarycpython.utils.dicts.multiply_float_values" title="Permalink to this definition">ïƒ</a></dt>
+<span class="sig-prename descclassname"><span class="pre">binarycpython.utils.dicts.</span></span><span class="sig-name descname"><span class="pre">multiply_float_values</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">input_dict</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">factor</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">ignore</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="_modules/binarycpython/utils/dicts.html#multiply_float_values"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#binarycpython.utils.dicts.multiply_float_values" title="Permalink to this definition">ïƒ</a></dt>
<dd><p>A function to recursively multiply values of a (nested) dictionary that are floats by a constant. Nested dictionaries call this function recursively.</p>
<dl class="field-list simple">
<dt class="field-odd">Parameters</dt>
<dd class="field-odd"><ul class="simple">
-<li><p><strong>d</strong> – the dictionary</p></li>
-<li><p><strong>const</strong> – the constant that multiplies float values</p></li>
+<li><p><strong>input_dict</strong> – the dictionary</p></li>
+<li><p><strong>factor</strong> – the constant that multiplies float values</p></li>
</ul>
</dd>
</dl>
@@ -301,13 +333,39 @@ this is ~ a factor 10 faster than David’s recursive_change_key_to_float routin
<dt class="sig sig-object py" id="binarycpython.utils.dicts.multiply_values_dict">
<span class="sig-prename descclassname"><span class="pre">binarycpython.utils.dicts.</span></span><span class="sig-name descname"><span class="pre">multiply_values_dict</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">input_dict</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">factor</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="_modules/binarycpython/utils/dicts.html#multiply_values_dict"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#binarycpython.utils.dicts.multiply_values_dict" title="Permalink to this definition">ïƒ</a></dt>
<dd><p>Function that goes over dictionary recursively and multiplies the value if possible by a factor</p>
-<p>If the key equals “general_infoâ€, the multiplication gets skipped</p>
+<p>If the key equals “general_infoâ€, the multiplication gets skipped.</p>
+<p>This function changes the values in-place, so the original dict is modified</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters</dt>
+<dd class="field-odd"><ul class="simple">
+<li><p><strong>input_dict</strong> (<code class="xref py py-class docutils literal notranslate"><span class="pre">dict</span></code>) – dictionary of which we want to multiply the values by <factor></p></li>
+<li><p><strong>factor</strong> (<code class="xref py py-data docutils literal notranslate"><span class="pre">Union</span></code>[<code class="xref py py-class docutils literal notranslate"><span class="pre">int</span></code>, <code class="xref py py-class docutils literal notranslate"><span class="pre">float</span></code>, <code class="xref py py-class docutils literal notranslate"><span class="pre">complex</span></code>, <code class="xref py py-class docutils literal notranslate"><span class="pre">number</span></code>]) – factor that we want to multiply the values with</p></li>
+</ul>
+</dd>
+<dt class="field-even">Returns</dt>
+<dd class="field-even"><p>dict containing the multiplied keys. This is the same object as we passed as input.</p>
+</dd>
+<dt class="field-odd">Return type</dt>
+<dd class="field-odd"><p>multiplied_dict</p>
+</dd>
+</dl>
</dd></dl>
<dl class="py function">
<dt class="sig sig-object py" id="binarycpython.utils.dicts.normalize_dict">
<span class="sig-prename descclassname"><span class="pre">binarycpython.utils.dicts.</span></span><span class="sig-name descname"><span class="pre">normalize_dict</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">result_dict</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="_modules/binarycpython/utils/dicts.html#normalize_dict"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#binarycpython.utils.dicts.normalize_dict" title="Permalink to this definition">ïƒ</a></dt>
-<dd><p>Function to normalise a dictionary</p>
+<dd><p>Function to normalise a dictionary by summing all the values and dividing each term by the total. Designed for dictionary containing only positive values.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters</dt>
+<dd class="field-odd"><p><strong>result_dict</strong> (<code class="xref py py-class docutils literal notranslate"><span class="pre">dict</span></code>) – dictionary where values should be positive number objects</p>
+</dd>
+<dt class="field-even">Returns</dt>
+<dd class="field-even"><p>dictionary where the values are normalised to sum to 1</p>
+</dd>
+<dt class="field-odd">Return type</dt>
+<dd class="field-odd"><p>normalized_dict</p>
+</dd>
+</dl>
</dd></dl>
<dl class="py function">
@@ -333,14 +391,39 @@ so that they don’t have to be calculated each time.</p>
<dt class="sig sig-object py" id="binarycpython.utils.dicts.recursive_change_key_to_float">
<span class="sig-prename descclassname"><span class="pre">binarycpython.utils.dicts.</span></span><span class="sig-name descname"><span class="pre">recursive_change_key_to_float</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">input_dict</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="_modules/binarycpython/utils/dicts.html#recursive_change_key_to_float"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#binarycpython.utils.dicts.recursive_change_key_to_float" title="Permalink to this definition">ïƒ</a></dt>
<dd><p>Function to recursively change the key to float</p>
-<p>This only works if the dict contains just sub-dicts or numbers/strings.
-Does not work with lists as values</p>
+<p>This only works if the dict contains just sub-dicts or numbers/strings.</p>
+<p>Does not work with lists as values</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters</dt>
+<dd class="field-odd"><p><strong>input_dict</strong> (<code class="xref py py-class docutils literal notranslate"><span class="pre">dict</span></code>) – dict of which we want to turn all the keys to float types if possible</p>
+</dd>
+<dt class="field-even">Returns</dt>
+<dd class="field-even"><p>dict of which the keys have been turned to float types where possible</p>
+</dd>
+<dt class="field-odd">Return type</dt>
+<dd class="field-odd"><p>new_dict</p>
+</dd>
+</dl>
</dd></dl>
<dl class="py function">
<dt class="sig sig-object py" id="binarycpython.utils.dicts.recursive_change_key_to_string">
<span class="sig-prename descclassname"><span class="pre">binarycpython.utils.dicts.</span></span><span class="sig-name descname"><span class="pre">recursive_change_key_to_string</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">input_dict</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">custom_format</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">'{:g}'</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="_modules/binarycpython/utils/dicts.html#recursive_change_key_to_string"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#binarycpython.utils.dicts.recursive_change_key_to_string" title="Permalink to this definition">ïƒ</a></dt>
-<dd><p>Function to recursively change the key back to a string but this time in a format that we decide</p>
+<dd><p>Function to recursively change the key back to a string but this time in a format that we decide. We’ll try to turn a string key into a float key before formatting the key</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters</dt>
+<dd class="field-odd"><ul class="simple">
+<li><p><strong>input_dict</strong> (<code class="xref py py-class docutils literal notranslate"><span class="pre">dict</span></code>) – dict of which we want to turn all the keys to string types (with a custom format)</p></li>
+<li><p><strong>custom_format</strong> (<code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code>) – custom format used when turning the key to strings</p></li>
+</ul>
+</dd>
+<dt class="field-even">Returns</dt>
+<dd class="field-even"><p>dict of which the keys have been turned to string types where possible</p>
+</dd>
+<dt class="field-odd">Return type</dt>
+<dd class="field-odd"><p>new_dict</p>
+</dd>
+</dl>
</dd></dl>
<dl class="py function">
@@ -441,7 +524,7 @@ Does not work with lists as values</p>
provided by <a href="https://readthedocs.org">Read the Docs</a>.
<br><br>
-Generated on binarycpython git branch: development_0.9.3/2.2.1 git revision 65c361290c607d015366bca40731b634b361cfa0 url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c-python/-/tree/development_0.9.3/2.2.1">git url</a>.
+Generated on binarycpython git branch: development_0.9.3/2.2.1 git revision 7e2b822d04dcc5482eabcc79ac1fe76bc42a6ece url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c-python/-/tree/development_0.9.3/2.2.1">git url</a>.
<br><br>
Using binary_c with bit branch branch_david: git revision: "5845:20220107:201620bd7" url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c/-/tree/branch_david">git url</a>.
diff --git a/docs/build/html/ensemble.html b/docs/build/html/ensemble.html
index 239f3839d..925edc168 100644
--- a/docs/build/html/ensemble.html
+++ b/docs/build/html/ensemble.html
@@ -128,27 +128,27 @@
<p>Module containing functions to interact with binary_c’s
population ensemble using the binarycpython package</p>
<dl class="py class">
-<dt class="sig sig-object py" id="binarycpython.utils.ensemble.BinaryCEncoder">
-<em class="property"><span class="pre">class</span><span class="w"> </span></em><span class="sig-prename descclassname"><span class="pre">binarycpython.utils.ensemble.</span></span><span class="sig-name descname"><span class="pre">BinaryCEncoder</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="o"><span class="pre">*</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">skipkeys</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">ensure_ascii</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">True</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">check_circular</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">True</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">allow_nan</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">True</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">sort_keys</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">indent</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">separators</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">default</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="_modules/binarycpython/utils/ensemble.html#BinaryCEncoder"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#binarycpython.utils.ensemble.BinaryCEncoder" title="Permalink to this definition">ïƒ</a></dt>
-<dd><p>Bases: <code class="xref py py-class docutils literal notranslate"><span class="pre">json.encoder.JSONEncoder</span></code></p>
-<p>Encoding class function to attempt to convert things to strings.</p>
+<dt class="sig sig-object py" id="binarycpython.utils.ensemble.BinarycDecoder">
+<em class="property"><span class="pre">class</span><span class="w"> </span></em><span class="sig-prename descclassname"><span class="pre">binarycpython.utils.ensemble.</span></span><span class="sig-name descname"><span class="pre">BinarycDecoder</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="o"><span class="pre">*</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">object_hook</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">parse_float</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">parse_int</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">parse_constant</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">strict</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">True</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">object_pairs_hook</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="_modules/binarycpython/utils/ensemble.html#BinarycDecoder"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#binarycpython.utils.ensemble.BinarycDecoder" title="Permalink to this definition">ïƒ</a></dt>
+<dd><p>Bases: <code class="xref py py-class docutils literal notranslate"><span class="pre">json.decoder.JSONDecoder</span></code></p>
+<p>Custom decoder to transform the numbers that are strings to actual floats</p>
<dl class="py method">
-<dt class="sig sig-object py" id="binarycpython.utils.ensemble.BinaryCEncoder.default">
-<span class="sig-name descname"><span class="pre">default</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">o</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="_modules/binarycpython/utils/ensemble.html#BinaryCEncoder.default"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#binarycpython.utils.ensemble.BinaryCEncoder.default" title="Permalink to this definition">ïƒ</a></dt>
-<dd><p>Converting function. Well, could be more precise. look at the JSON module</p>
+<dt class="sig sig-object py" id="binarycpython.utils.ensemble.BinarycDecoder.decode">
+<span class="sig-name descname"><span class="pre">decode</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">s</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="_modules/binarycpython/utils/ensemble.html#BinarycDecoder.decode"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#binarycpython.utils.ensemble.BinarycDecoder.decode" title="Permalink to this definition">ïƒ</a></dt>
+<dd><p>Entry point function for decoding</p>
</dd></dl>
</dd></dl>
<dl class="py class">
-<dt class="sig sig-object py" id="binarycpython.utils.ensemble.binarycDecoder">
-<em class="property"><span class="pre">class</span><span class="w"> </span></em><span class="sig-prename descclassname"><span class="pre">binarycpython.utils.ensemble.</span></span><span class="sig-name descname"><span class="pre">binarycDecoder</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="o"><span class="pre">*</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">object_hook</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">parse_float</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">parse_int</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">parse_constant</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">strict</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">True</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">object_pairs_hook</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="_modules/binarycpython/utils/ensemble.html#binarycDecoder"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#binarycpython.utils.ensemble.binarycDecoder" title="Permalink to this definition">ïƒ</a></dt>
-<dd><p>Bases: <code class="xref py py-class docutils literal notranslate"><span class="pre">json.decoder.JSONDecoder</span></code></p>
-<p>Custom decoder to transform the numbers that are strings to actual floats</p>
+<dt class="sig sig-object py" id="binarycpython.utils.ensemble.BinarycEncoder">
+<em class="property"><span class="pre">class</span><span class="w"> </span></em><span class="sig-prename descclassname"><span class="pre">binarycpython.utils.ensemble.</span></span><span class="sig-name descname"><span class="pre">BinarycEncoder</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="o"><span class="pre">*</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">skipkeys</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">ensure_ascii</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">True</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">check_circular</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">True</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">allow_nan</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">True</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">sort_keys</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">False</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">indent</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">separators</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em>, <em class="sig-param"><span class="n"><span class="pre">default</span></span><span class="o"><span class="pre">=</span></span><span class="default_value"><span class="pre">None</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="_modules/binarycpython/utils/ensemble.html#BinarycEncoder"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#binarycpython.utils.ensemble.BinarycEncoder" title="Permalink to this definition">ïƒ</a></dt>
+<dd><p>Bases: <code class="xref py py-class docutils literal notranslate"><span class="pre">json.encoder.JSONEncoder</span></code></p>
+<p>Encoding class function to attempt to convert things to strings.</p>
<dl class="py method">
-<dt class="sig sig-object py" id="binarycpython.utils.ensemble.binarycDecoder.decode">
-<span class="sig-name descname"><span class="pre">decode</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">s</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="_modules/binarycpython/utils/ensemble.html#binarycDecoder.decode"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#binarycpython.utils.ensemble.binarycDecoder.decode" title="Permalink to this definition">ïƒ</a></dt>
-<dd><p>Entry point function for decoding</p>
+<dt class="sig sig-object py" id="binarycpython.utils.ensemble.BinarycEncoder.default">
+<span class="sig-name descname"><span class="pre">default</span></span><span class="sig-paren">(</span><em class="sig-param"><span class="n"><span class="pre">o</span></span></em><span class="sig-paren">)</span><a class="reference internal" href="_modules/binarycpython/utils/ensemble.html#BinarycEncoder.default"><span class="viewcode-link"><span class="pre">[source]</span></span></a><a class="headerlink" href="#binarycpython.utils.ensemble.BinarycEncoder.default" title="Permalink to this definition">ïƒ</a></dt>
+<dd><p>Converting function. Well, could be more precise. look at the JSON module</p>
</dd></dl>
</dd></dl>
@@ -228,7 +228,7 @@ creates a working JSON dictionary out of it.</p>
<dd class="field-odd"><p><strong>raw_output</strong> – raw output of the ensemble dump by binary_c</p>
</dd>
<dt class="field-even">Returns</dt>
-<dd class="field-even"><p>json.loads(raw_output, cls=binarycDecoder)</p>
+<dd class="field-even"><p>json.loads(raw_output, cls=BinarycDecoder)</p>
</dd>
</dl>
</dd></dl>
@@ -275,7 +275,7 @@ and return its contents to as a Python dictionary.</p>
provided by <a href="https://readthedocs.org">Read the Docs</a>.
<br><br>
-Generated on binarycpython git branch: development_0.9.3/2.2.1 git revision 65c361290c607d015366bca40731b634b361cfa0 url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c-python/-/tree/development_0.9.3/2.2.1">git url</a>.
+Generated on binarycpython git branch: development_0.9.3/2.2.1 git revision 7e2b822d04dcc5482eabcc79ac1fe76bc42a6ece url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c-python/-/tree/development_0.9.3/2.2.1">git url</a>.
<br><br>
Using binary_c with bit branch branch_david: git revision: "5845:20220107:201620bd7" url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c/-/tree/branch_david">git url</a>.
diff --git a/docs/build/html/example_notebooks.html b/docs/build/html/example_notebooks.html
index 9814e5b21..14115fec6 100644
--- a/docs/build/html/example_notebooks.html
+++ b/docs/build/html/example_notebooks.html
@@ -215,7 +215,7 @@
provided by <a href="https://readthedocs.org">Read the Docs</a>.
<br><br>
-Generated on binarycpython git branch: development_0.9.3/2.2.1 git revision 65c361290c607d015366bca40731b634b361cfa0 url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c-python/-/tree/development_0.9.3/2.2.1">git url</a>.
+Generated on binarycpython git branch: development_0.9.3/2.2.1 git revision 7e2b822d04dcc5482eabcc79ac1fe76bc42a6ece url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c-python/-/tree/development_0.9.3/2.2.1">git url</a>.
<br><br>
Using binary_c with bit branch branch_david: git revision: "5845:20220107:201620bd7" url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c/-/tree/branch_david">git url</a>.
diff --git a/docs/build/html/examples/notebook_BHBH.html b/docs/build/html/examples/notebook_BHBH.html
index df9e5c4a5..40d2eb5c8 100644
--- a/docs/build/html/examples/notebook_BHBH.html
+++ b/docs/build/html/examples/notebook_BHBH.html
@@ -5574,7 +5574,7 @@ system 2 / 100
provided by <a href="https://readthedocs.org">Read the Docs</a>.
<br><br>
-Generated on binarycpython git branch: development_0.9.3/2.2.1 git revision 65c361290c607d015366bca40731b634b361cfa0 url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c-python/-/tree/development_0.9.3/2.2.1">git url</a>.
+Generated on binarycpython git branch: development_0.9.3/2.2.1 git revision 7e2b822d04dcc5482eabcc79ac1fe76bc42a6ece url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c-python/-/tree/development_0.9.3/2.2.1">git url</a>.
<br><br>
Using binary_c with bit branch branch_david: git revision: "5845:20220107:201620bd7" url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c/-/tree/branch_david">git url</a>.
diff --git a/docs/build/html/examples/notebook_HRD.html b/docs/build/html/examples/notebook_HRD.html
index 34beb7a71..0be8b2b43 100644
--- a/docs/build/html/examples/notebook_HRD.html
+++ b/docs/build/html/examples/notebook_HRD.html
@@ -1366,7 +1366,7 @@ very start.</p>
provided by <a href="https://readthedocs.org">Read the Docs</a>.
<br><br>
-Generated on binarycpython git branch: development_0.9.3/2.2.1 git revision 65c361290c607d015366bca40731b634b361cfa0 url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c-python/-/tree/development_0.9.3/2.2.1">git url</a>.
+Generated on binarycpython git branch: development_0.9.3/2.2.1 git revision 7e2b822d04dcc5482eabcc79ac1fe76bc42a6ece url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c-python/-/tree/development_0.9.3/2.2.1">git url</a>.
<br><br>
Using binary_c with bit branch branch_david: git revision: "5845:20220107:201620bd7" url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c/-/tree/branch_david">git url</a>.
diff --git a/docs/build/html/examples/notebook_api_functionality.html b/docs/build/html/examples/notebook_api_functionality.html
index 5e9ba94b4..0f40b7a4b 100644
--- a/docs/build/html/examples/notebook_api_functionality.html
+++ b/docs/build/html/examples/notebook_api_functionality.html
@@ -1291,7 +1291,7 @@ MAXIMUM MASS RATIO 0.0141
provided by <a href="https://readthedocs.org">Read the Docs</a>.
<br><br>
-Generated on binarycpython git branch: development_0.9.3/2.2.1 git revision 65c361290c607d015366bca40731b634b361cfa0 url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c-python/-/tree/development_0.9.3/2.2.1">git url</a>.
+Generated on binarycpython git branch: development_0.9.3/2.2.1 git revision 7e2b822d04dcc5482eabcc79ac1fe76bc42a6ece url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c-python/-/tree/development_0.9.3/2.2.1">git url</a>.
<br><br>
Using binary_c with bit branch branch_david: git revision: "5845:20220107:201620bd7" url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c/-/tree/branch_david">git url</a>.
diff --git a/docs/build/html/examples/notebook_common_envelope_evolution.html b/docs/build/html/examples/notebook_common_envelope_evolution.html
index 1be791553..857d8658b 100644
--- a/docs/build/html/examples/notebook_common_envelope_evolution.html
+++ b/docs/build/html/examples/notebook_common_envelope_evolution.html
@@ -1131,7 +1131,7 @@ Text(0, 0.5, 'Number of stars')
provided by <a href="https://readthedocs.org">Read the Docs</a>.
<br><br>
-Generated on binarycpython git branch: development_0.9.3/2.2.1 git revision 65c361290c607d015366bca40731b634b361cfa0 url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c-python/-/tree/development_0.9.3/2.2.1">git url</a>.
+Generated on binarycpython git branch: development_0.9.3/2.2.1 git revision 7e2b822d04dcc5482eabcc79ac1fe76bc42a6ece url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c-python/-/tree/development_0.9.3/2.2.1">git url</a>.
<br><br>
Using binary_c with bit branch branch_david: git revision: "5845:20220107:201620bd7" url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c/-/tree/branch_david">git url</a>.
diff --git a/docs/build/html/examples/notebook_custom_logging.html b/docs/build/html/examples/notebook_custom_logging.html
index f819b261a..ed1c723bc 100644
--- a/docs/build/html/examples/notebook_custom_logging.html
+++ b/docs/build/html/examples/notebook_custom_logging.html
@@ -785,7 +785,7 @@ EXAMPLE_SN 1.050651207308e+01 1.59452 9.34213 20 12 13 5 1 6.55458 4
provided by <a href="https://readthedocs.org">Read the Docs</a>.
<br><br>
-Generated on binarycpython git branch: development_0.9.3/2.2.1 git revision 65c361290c607d015366bca40731b634b361cfa0 url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c-python/-/tree/development_0.9.3/2.2.1">git url</a>.
+Generated on binarycpython git branch: development_0.9.3/2.2.1 git revision 7e2b822d04dcc5482eabcc79ac1fe76bc42a6ece url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c-python/-/tree/development_0.9.3/2.2.1">git url</a>.
<br><br>
Using binary_c with bit branch branch_david: git revision: "5845:20220107:201620bd7" url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c/-/tree/branch_david">git url</a>.
diff --git a/docs/build/html/examples/notebook_extra_features.html b/docs/build/html/examples/notebook_extra_features.html
index a26d49640..844a5b0b5 100644
--- a/docs/build/html/examples/notebook_extra_features.html
+++ b/docs/build/html/examples/notebook_extra_features.html
@@ -537,7 +537,7 @@ dict_keys(['networks', 'isotopes', 'argpairs', 'ense
provided by <a href="https://readthedocs.org">Read the Docs</a>.
<br><br>
-Generated on binarycpython git branch: development_0.9.3/2.2.1 git revision 65c361290c607d015366bca40731b634b361cfa0 url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c-python/-/tree/development_0.9.3/2.2.1">git url</a>.
+Generated on binarycpython git branch: development_0.9.3/2.2.1 git revision 7e2b822d04dcc5482eabcc79ac1fe76bc42a6ece url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c-python/-/tree/development_0.9.3/2.2.1">git url</a>.
<br><br>
Using binary_c with bit branch branch_david: git revision: "5845:20220107:201620bd7" url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c/-/tree/branch_david">git url</a>.
diff --git a/docs/build/html/examples/notebook_individual_systems.html b/docs/build/html/examples/notebook_individual_systems.html
index 17d420cae..e167d4e9b 100644
--- a/docs/build/html/examples/notebook_individual_systems.html
+++ b/docs/build/html/examples/notebook_individual_systems.html
@@ -839,7 +839,7 @@ SINGLE_STAR_LIFETIME 15 14.9927
provided by <a href="https://readthedocs.org">Read the Docs</a>.
<br><br>
-Generated on binarycpython git branch: development_0.9.3/2.2.1 git revision 65c361290c607d015366bca40731b634b361cfa0 url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c-python/-/tree/development_0.9.3/2.2.1">git url</a>.
+Generated on binarycpython git branch: development_0.9.3/2.2.1 git revision 7e2b822d04dcc5482eabcc79ac1fe76bc42a6ece url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c-python/-/tree/development_0.9.3/2.2.1">git url</a>.
<br><br>
Using binary_c with bit branch branch_david: git revision: "5845:20220107:201620bd7" url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c/-/tree/branch_david">git url</a>.
diff --git a/docs/build/html/examples/notebook_luminosity_function_binaries.html b/docs/build/html/examples/notebook_luminosity_function_binaries.html
index aa92d9888..a6fad454e 100644
--- a/docs/build/html/examples/notebook_luminosity_function_binaries.html
+++ b/docs/build/html/examples/notebook_luminosity_function_binaries.html
@@ -1198,7 +1198,7 @@ Done population run!
provided by <a href="https://readthedocs.org">Read the Docs</a>.
<br><br>
-Generated on binarycpython git branch: development_0.9.3/2.2.1 git revision 65c361290c607d015366bca40731b634b361cfa0 url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c-python/-/tree/development_0.9.3/2.2.1">git url</a>.
+Generated on binarycpython git branch: development_0.9.3/2.2.1 git revision 7e2b822d04dcc5482eabcc79ac1fe76bc42a6ece url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c-python/-/tree/development_0.9.3/2.2.1">git url</a>.
<br><br>
Using binary_c with bit branch branch_david: git revision: "5845:20220107:201620bd7" url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c/-/tree/branch_david">git url</a>.
diff --git a/docs/build/html/examples/notebook_luminosity_function_single.html b/docs/build/html/examples/notebook_luminosity_function_single.html
index dc2f2a30c..9e3c5a6b0 100644
--- a/docs/build/html/examples/notebook_luminosity_function_single.html
+++ b/docs/build/html/examples/notebook_luminosity_function_single.html
@@ -855,7 +855,7 @@ works perfectly well.</p>
provided by <a href="https://readthedocs.org">Read the Docs</a>.
<br><br>
-Generated on binarycpython git branch: development_0.9.3/2.2.1 git revision 65c361290c607d015366bca40731b634b361cfa0 url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c-python/-/tree/development_0.9.3/2.2.1">git url</a>.
+Generated on binarycpython git branch: development_0.9.3/2.2.1 git revision 7e2b822d04dcc5482eabcc79ac1fe76bc42a6ece url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c-python/-/tree/development_0.9.3/2.2.1">git url</a>.
<br><br>
Using binary_c with bit branch branch_david: git revision: "5845:20220107:201620bd7" url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c/-/tree/branch_david">git url</a>.
diff --git a/docs/build/html/examples/notebook_massive_remnants.html b/docs/build/html/examples/notebook_massive_remnants.html
index 45d13910b..da6130b5c 100644
--- a/docs/build/html/examples/notebook_massive_remnants.html
+++ b/docs/build/html/examples/notebook_massive_remnants.html
@@ -960,7 +960,7 @@ There were no errors found in this run.
provided by <a href="https://readthedocs.org">Read the Docs</a>.
<br><br>
-Generated on binarycpython git branch: development_0.9.3/2.2.1 git revision 65c361290c607d015366bca40731b634b361cfa0 url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c-python/-/tree/development_0.9.3/2.2.1">git url</a>.
+Generated on binarycpython git branch: development_0.9.3/2.2.1 git revision 7e2b822d04dcc5482eabcc79ac1fe76bc42a6ece url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c-python/-/tree/development_0.9.3/2.2.1">git url</a>.
<br><br>
Using binary_c with bit branch branch_david: git revision: "5845:20220107:201620bd7" url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c/-/tree/branch_david">git url</a>.
diff --git a/docs/build/html/examples/notebook_population.html b/docs/build/html/examples/notebook_population.html
index 8a2066a68..0e8e6ad1d 100644
--- a/docs/build/html/examples/notebook_population.html
+++ b/docs/build/html/examples/notebook_population.html
@@ -1414,7 +1414,7 @@ time mass_1 zams_mass_1 mass_2 zams_mass_2 stellar_type_1 prev_stellar_type_1 st
provided by <a href="https://readthedocs.org">Read the Docs</a>.
<br><br>
-Generated on binarycpython git branch: development_0.9.3/2.2.1 git revision 65c361290c607d015366bca40731b634b361cfa0 url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c-python/-/tree/development_0.9.3/2.2.1">git url</a>.
+Generated on binarycpython git branch: development_0.9.3/2.2.1 git revision 7e2b822d04dcc5482eabcc79ac1fe76bc42a6ece url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c-python/-/tree/development_0.9.3/2.2.1">git url</a>.
<br><br>
Using binary_c with bit branch branch_david: git revision: "5845:20220107:201620bd7" url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c/-/tree/branch_david">git url</a>.
diff --git a/docs/build/html/examples/notebook_solar_system.html b/docs/build/html/examples/notebook_solar_system.html
index 7b51cb8b1..48c1ae151 100644
--- a/docs/build/html/examples/notebook_solar_system.html
+++ b/docs/build/html/examples/notebook_solar_system.html
@@ -614,7 +614,7 @@ div.rendered_html tbody tr:hover {
provided by <a href="https://readthedocs.org">Read the Docs</a>.
<br><br>
-Generated on binarycpython git branch: development_0.9.3/2.2.1 git revision 65c361290c607d015366bca40731b634b361cfa0 url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c-python/-/tree/development_0.9.3/2.2.1">git url</a>.
+Generated on binarycpython git branch: development_0.9.3/2.2.1 git revision 7e2b822d04dcc5482eabcc79ac1fe76bc42a6ece url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c-python/-/tree/development_0.9.3/2.2.1">git url</a>.
<br><br>
Using binary_c with bit branch branch_david: git revision: "5845:20220107:201620bd7" url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c/-/tree/branch_david">git url</a>.
diff --git a/docs/build/html/examples/old/basic_example.html b/docs/build/html/examples/old/basic_example.html
index cf5dbc666..cc749b54a 100644
--- a/docs/build/html/examples/old/basic_example.html
+++ b/docs/build/html/examples/old/basic_example.html
@@ -453,7 +453,7 @@ div.rendered_html tbody tr:hover {
provided by <a href="https://readthedocs.org">Read the Docs</a>.
<br><br>
-Generated on binarycpython git branch: development_0.9.3/2.2.1 git revision 65c361290c607d015366bca40731b634b361cfa0 url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c-python/-/tree/development_0.9.3/2.2.1">git url</a>.
+Generated on binarycpython git branch: development_0.9.3/2.2.1 git revision 7e2b822d04dcc5482eabcc79ac1fe76bc42a6ece url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c-python/-/tree/development_0.9.3/2.2.1">git url</a>.
<br><br>
Using binary_c with bit branch branch_david: git revision: "5845:20220107:201620bd7" url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c/-/tree/branch_david">git url</a>.
diff --git a/docs/build/html/examples/old/workshop_example_notebook.html b/docs/build/html/examples/old/workshop_example_notebook.html
index 3be13cee8..eb52c1db3 100644
--- a/docs/build/html/examples/old/workshop_example_notebook.html
+++ b/docs/build/html/examples/old/workshop_example_notebook.html
@@ -892,7 +892,7 @@ Took 14.214274644851685s
provided by <a href="https://readthedocs.org">Read the Docs</a>.
<br><br>
-Generated on binarycpython git branch: development_0.9.3/2.2.1 git revision 65c361290c607d015366bca40731b634b361cfa0 url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c-python/-/tree/development_0.9.3/2.2.1">git url</a>.
+Generated on binarycpython git branch: development_0.9.3/2.2.1 git revision 7e2b822d04dcc5482eabcc79ac1fe76bc42a6ece url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c-python/-/tree/development_0.9.3/2.2.1">git url</a>.
<br><br>
Using binary_c with bit branch branch_david: git revision: "5845:20220107:201620bd7" url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c/-/tree/branch_david">git url</a>.
diff --git a/docs/build/html/functions.html b/docs/build/html/functions.html
index f21faa026..f884d6442 100644
--- a/docs/build/html/functions.html
+++ b/docs/build/html/functions.html
@@ -720,7 +720,7 @@ of all the binary_c parameters.</p>
provided by <a href="https://readthedocs.org">Read the Docs</a>.
<br><br>
-Generated on binarycpython git branch: development_0.9.3/2.2.1 git revision 65c361290c607d015366bca40731b634b361cfa0 url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c-python/-/tree/development_0.9.3/2.2.1">git url</a>.
+Generated on binarycpython git branch: development_0.9.3/2.2.1 git revision 7e2b822d04dcc5482eabcc79ac1fe76bc42a6ece url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c-python/-/tree/development_0.9.3/2.2.1">git url</a>.
<br><br>
Using binary_c with bit branch branch_david: git revision: "5845:20220107:201620bd7" url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c/-/tree/branch_david">git url</a>.
diff --git a/docs/build/html/genindex.html b/docs/build/html/genindex.html
index f94456426..913f76a7e 100644
--- a/docs/build/html/genindex.html
+++ b/docs/build/html/genindex.html
@@ -164,9 +164,9 @@
</li>
<li><a href="ensemble.html#binarycpython.utils.ensemble.binaryc_json_serializer">binaryc_json_serializer() (in module binarycpython.utils.ensemble)</a>
</li>
- <li><a href="ensemble.html#binarycpython.utils.ensemble.binarycDecoder">binarycDecoder (class in binarycpython.utils.ensemble)</a>
+ <li><a href="ensemble.html#binarycpython.utils.ensemble.BinarycDecoder">BinarycDecoder (class in binarycpython.utils.ensemble)</a>
</li>
- <li><a href="ensemble.html#binarycpython.utils.ensemble.BinaryCEncoder">BinaryCEncoder (class in binarycpython.utils.ensemble)</a>
+ <li><a href="ensemble.html#binarycpython.utils.ensemble.BinarycEncoder">BinarycEncoder (class in binarycpython.utils.ensemble)</a>
</li>
<li>
binarycpython.utils.custom_logging_functions
@@ -431,9 +431,9 @@
</li>
<li><a href="functions.html#binarycpython.utils.functions.datalinedict">datalinedict() (in module binarycpython.utils.functions)</a>
</li>
- <li><a href="ensemble.html#binarycpython.utils.ensemble.binarycDecoder.decode">decode() (binarycpython.utils.ensemble.binarycDecoder method)</a>
+ <li><a href="ensemble.html#binarycpython.utils.ensemble.BinarycDecoder.decode">decode() (binarycpython.utils.ensemble.BinarycDecoder method)</a>
</li>
- <li><a href="ensemble.html#binarycpython.utils.ensemble.BinaryCEncoder.default">default() (binarycpython.utils.ensemble.BinaryCEncoder method)</a>
+ <li><a href="ensemble.html#binarycpython.utils.ensemble.BinarycEncoder.default">default() (binarycpython.utils.ensemble.BinarycEncoder method)</a>
</li>
<li><a href="population_extensions/cache.html#binarycpython.utils.population_extensions.cache.cache.default_cache_dir">default_cache_dir() (binarycpython.utils.population_extensions.cache.cache method)</a>
@@ -1074,7 +1074,7 @@
provided by <a href="https://readthedocs.org">Read the Docs</a>.
<br><br>
-Generated on binarycpython git branch: development_0.9.3/2.2.1 git revision 65c361290c607d015366bca40731b634b361cfa0 url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c-python/-/tree/development_0.9.3/2.2.1">git url</a>.
+Generated on binarycpython git branch: development_0.9.3/2.2.1 git revision 7e2b822d04dcc5482eabcc79ac1fe76bc42a6ece url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c-python/-/tree/development_0.9.3/2.2.1">git url</a>.
<br><br>
Using binary_c with bit branch branch_david: git revision: "5845:20220107:201620bd7" url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c/-/tree/branch_david">git url</a>.
diff --git a/docs/build/html/grid.html b/docs/build/html/grid.html
index 93fbd756b..9b04bd91a 100644
--- a/docs/build/html/grid.html
+++ b/docs/build/html/grid.html
@@ -376,7 +376,7 @@ in the self.grid_options</p>
provided by <a href="https://readthedocs.org">Read the Docs</a>.
<br><br>
-Generated on binarycpython git branch: development_0.9.3/2.2.1 git revision 65c361290c607d015366bca40731b634b361cfa0 url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c-python/-/tree/development_0.9.3/2.2.1">git url</a>.
+Generated on binarycpython git branch: development_0.9.3/2.2.1 git revision 7e2b822d04dcc5482eabcc79ac1fe76bc42a6ece url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c-python/-/tree/development_0.9.3/2.2.1">git url</a>.
<br><br>
Using binary_c with bit branch branch_david: git revision: "5845:20220107:201620bd7" url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c/-/tree/branch_david">git url</a>.
diff --git a/docs/build/html/grid_options_descriptions.html b/docs/build/html/grid_options_descriptions.html
index cabcf934a..45833b167 100644
--- a/docs/build/html/grid_options_descriptions.html
+++ b/docs/build/html/grid_options_descriptions.html
@@ -643,7 +643,7 @@ q extrapolation (below 0.15) method
provided by <a href="https://readthedocs.org">Read the Docs</a>.
<br><br>
-Generated on binarycpython git branch: development_0.9.3/2.2.1 git revision 65c361290c607d015366bca40731b634b361cfa0 url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c-python/-/tree/development_0.9.3/2.2.1">git url</a>.
+Generated on binarycpython git branch: development_0.9.3/2.2.1 git revision 7e2b822d04dcc5482eabcc79ac1fe76bc42a6ece url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c-python/-/tree/development_0.9.3/2.2.1">git url</a>.
<br><br>
Using binary_c with bit branch branch_david: git revision: "5845:20220107:201620bd7" url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c/-/tree/branch_david">git url</a>.
diff --git a/docs/build/html/index.html b/docs/build/html/index.html
index 3cb10d587..7fbbc9c5e 100644
--- a/docs/build/html/index.html
+++ b/docs/build/html/index.html
@@ -309,7 +309,7 @@
provided by <a href="https://readthedocs.org">Read the Docs</a>.
<br><br>
-Generated on binarycpython git branch: development_0.9.3/2.2.1 git revision 65c361290c607d015366bca40731b634b361cfa0 url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c-python/-/tree/development_0.9.3/2.2.1">git url</a>.
+Generated on binarycpython git branch: development_0.9.3/2.2.1 git revision 7e2b822d04dcc5482eabcc79ac1fe76bc42a6ece url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c-python/-/tree/development_0.9.3/2.2.1">git url</a>.
<br><br>
Using binary_c with bit branch branch_david: git revision: "5845:20220107:201620bd7" url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c/-/tree/branch_david">git url</a>.
diff --git a/docs/build/html/modules.html b/docs/build/html/modules.html
index 4a6dcd70f..893b741ec 100644
--- a/docs/build/html/modules.html
+++ b/docs/build/html/modules.html
@@ -173,7 +173,7 @@
provided by <a href="https://readthedocs.org">Read the Docs</a>.
<br><br>
-Generated on binarycpython git branch: development_0.9.3/2.2.1 git revision 65c361290c607d015366bca40731b634b361cfa0 url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c-python/-/tree/development_0.9.3/2.2.1">git url</a>.
+Generated on binarycpython git branch: development_0.9.3/2.2.1 git revision 7e2b822d04dcc5482eabcc79ac1fe76bc42a6ece url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c-python/-/tree/development_0.9.3/2.2.1">git url</a>.
<br><br>
Using binary_c with bit branch branch_david: git revision: "5845:20220107:201620bd7" url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c/-/tree/branch_david">git url</a>.
diff --git a/docs/build/html/objects.inv b/docs/build/html/objects.inv
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e|HQ^1KaF38RkXVA-bT}FmA~Grt^W_2mqJ>bL2qdQ
diff --git a/docs/build/html/plot_functions.html b/docs/build/html/plot_functions.html
index 1506174c6..5121512fd 100644
--- a/docs/build/html/plot_functions.html
+++ b/docs/build/html/plot_functions.html
@@ -377,7 +377,7 @@ This is not included in all the plotting routines.</p></li>
provided by <a href="https://readthedocs.org">Read the Docs</a>.
<br><br>
-Generated on binarycpython git branch: development_0.9.3/2.2.1 git revision 65c361290c607d015366bca40731b634b361cfa0 url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c-python/-/tree/development_0.9.3/2.2.1">git url</a>.
+Generated on binarycpython git branch: development_0.9.3/2.2.1 git revision 7e2b822d04dcc5482eabcc79ac1fe76bc42a6ece url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c-python/-/tree/development_0.9.3/2.2.1">git url</a>.
<br><br>
Using binary_c with bit branch branch_david: git revision: "5845:20220107:201620bd7" url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c/-/tree/branch_david">git url</a>.
diff --git a/docs/build/html/population_extensions/HPC.html b/docs/build/html/population_extensions/HPC.html
index aa5dd71d8..1117c346f 100644
--- a/docs/build/html/population_extensions/HPC.html
+++ b/docs/build/html/population_extensions/HPC.html
@@ -372,7 +372,7 @@ and (if given) the string passed in.</p>
provided by <a href="https://readthedocs.org">Read the Docs</a>.
<br><br>
-Generated on binarycpython git branch: development_0.9.3/2.2.1 git revision 65c361290c607d015366bca40731b634b361cfa0 url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c-python/-/tree/development_0.9.3/2.2.1">git url</a>.
+Generated on binarycpython git branch: development_0.9.3/2.2.1 git revision 7e2b822d04dcc5482eabcc79ac1fe76bc42a6ece url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c-python/-/tree/development_0.9.3/2.2.1">git url</a>.
<br><br>
Using binary_c with bit branch branch_david: git revision: "5845:20220107:201620bd7" url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c/-/tree/branch_david">git url</a>.
diff --git a/docs/build/html/population_extensions/Moe_di_Stefano_2017.html b/docs/build/html/population_extensions/Moe_di_Stefano_2017.html
index ce2c2b3aa..1cf74ec60 100644
--- a/docs/build/html/population_extensions/Moe_di_Stefano_2017.html
+++ b/docs/build/html/population_extensions/Moe_di_Stefano_2017.html
@@ -192,7 +192,7 @@ then set the distribution functions</p>
provided by <a href="https://readthedocs.org">Read the Docs</a>.
<br><br>
-Generated on binarycpython git branch: development_0.9.3/2.2.1 git revision 65c361290c607d015366bca40731b634b361cfa0 url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c-python/-/tree/development_0.9.3/2.2.1">git url</a>.
+Generated on binarycpython git branch: development_0.9.3/2.2.1 git revision 7e2b822d04dcc5482eabcc79ac1fe76bc42a6ece url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c-python/-/tree/development_0.9.3/2.2.1">git url</a>.
<br><br>
Using binary_c with bit branch branch_david: git revision: "5845:20220107:201620bd7" url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c/-/tree/branch_david">git url</a>.
diff --git a/docs/build/html/population_extensions/analytics.html b/docs/build/html/population_extensions/analytics.html
index e4b388e96..9d1384b75 100644
--- a/docs/build/html/population_extensions/analytics.html
+++ b/docs/build/html/population_extensions/analytics.html
@@ -181,7 +181,7 @@ the time elapsed if otherwise or if force is True</p>
provided by <a href="https://readthedocs.org">Read the Docs</a>.
<br><br>
-Generated on binarycpython git branch: development_0.9.3/2.2.1 git revision 65c361290c607d015366bca40731b634b361cfa0 url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c-python/-/tree/development_0.9.3/2.2.1">git url</a>.
+Generated on binarycpython git branch: development_0.9.3/2.2.1 git revision 7e2b822d04dcc5482eabcc79ac1fe76bc42a6ece url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c-python/-/tree/development_0.9.3/2.2.1">git url</a>.
<br><br>
Using binary_c with bit branch branch_david: git revision: "5845:20220107:201620bd7" url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c/-/tree/branch_david">git url</a>.
diff --git a/docs/build/html/population_extensions/cache.html b/docs/build/html/population_extensions/cache.html
index 9b7283d44..cb7e145c6 100644
--- a/docs/build/html/population_extensions/cache.html
+++ b/docs/build/html/population_extensions/cache.html
@@ -215,7 +215,7 @@ given caches of size self.grid_options[‘function_cache_size’][func]</p>
provided by <a href="https://readthedocs.org">Read the Docs</a>.
<br><br>
-Generated on binarycpython git branch: development_0.9.3/2.2.1 git revision 65c361290c607d015366bca40731b634b361cfa0 url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c-python/-/tree/development_0.9.3/2.2.1">git url</a>.
+Generated on binarycpython git branch: development_0.9.3/2.2.1 git revision 7e2b822d04dcc5482eabcc79ac1fe76bc42a6ece url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c-python/-/tree/development_0.9.3/2.2.1">git url</a>.
<br><br>
Using binary_c with bit branch branch_david: git revision: "5845:20220107:201620bd7" url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c/-/tree/branch_david">git url</a>.
diff --git a/docs/build/html/population_extensions/condor.html b/docs/build/html/population_extensions/condor.html
index 84b3bc63b..404180eee 100644
--- a/docs/build/html/population_extensions/condor.html
+++ b/docs/build/html/population_extensions/condor.html
@@ -232,7 +232,7 @@ if grid_options[‘condor’]==3, we are being called from the jobs to run the g
provided by <a href="https://readthedocs.org">Read the Docs</a>.
<br><br>
-Generated on binarycpython git branch: development_0.9.3/2.2.1 git revision 65c361290c607d015366bca40731b634b361cfa0 url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c-python/-/tree/development_0.9.3/2.2.1">git url</a>.
+Generated on binarycpython git branch: development_0.9.3/2.2.1 git revision 7e2b822d04dcc5482eabcc79ac1fe76bc42a6ece url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c-python/-/tree/development_0.9.3/2.2.1">git url</a>.
<br><br>
Using binary_c with bit branch branch_david: git revision: "5845:20220107:201620bd7" url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c/-/tree/branch_david">git url</a>.
diff --git a/docs/build/html/population_extensions/dataIO.html b/docs/build/html/population_extensions/dataIO.html
index 4ec89d89c..cc4b5fdfa 100644
--- a/docs/build/html/population_extensions/dataIO.html
+++ b/docs/build/html/population_extensions/dataIO.html
@@ -393,7 +393,7 @@ passed to json.dumps)</p></li>
provided by <a href="https://readthedocs.org">Read the Docs</a>.
<br><br>
-Generated on binarycpython git branch: development_0.9.3/2.2.1 git revision 65c361290c607d015366bca40731b634b361cfa0 url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c-python/-/tree/development_0.9.3/2.2.1">git url</a>.
+Generated on binarycpython git branch: development_0.9.3/2.2.1 git revision 7e2b822d04dcc5482eabcc79ac1fe76bc42a6ece url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c-python/-/tree/development_0.9.3/2.2.1">git url</a>.
<br><br>
Using binary_c with bit branch branch_david: git revision: "5845:20220107:201620bd7" url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c/-/tree/branch_david">git url</a>.
diff --git a/docs/build/html/population_extensions/distribution_functions.html b/docs/build/html/population_extensions/distribution_functions.html
index e42d537c4..f4898a794 100644
--- a/docs/build/html/population_extensions/distribution_functions.html
+++ b/docs/build/html/population_extensions/distribution_functions.html
@@ -833,7 +833,7 @@ and is be given by dp/dlogP ~ (logP)^p for all other binary configurations (defa
provided by <a href="https://readthedocs.org">Read the Docs</a>.
<br><br>
-Generated on binarycpython git branch: development_0.9.3/2.2.1 git revision 65c361290c607d015366bca40731b634b361cfa0 url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c-python/-/tree/development_0.9.3/2.2.1">git url</a>.
+Generated on binarycpython git branch: development_0.9.3/2.2.1 git revision 7e2b822d04dcc5482eabcc79ac1fe76bc42a6ece url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c-python/-/tree/development_0.9.3/2.2.1">git url</a>.
<br><br>
Using binary_c with bit branch branch_david: git revision: "5845:20220107:201620bd7" url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c/-/tree/branch_david">git url</a>.
diff --git a/docs/build/html/population_extensions/grid_logging.html b/docs/build/html/population_extensions/grid_logging.html
index 2317a1e57..9221cf65a 100644
--- a/docs/build/html/population_extensions/grid_logging.html
+++ b/docs/build/html/population_extensions/grid_logging.html
@@ -179,7 +179,7 @@ system_number: the system number</p>
provided by <a href="https://readthedocs.org">Read the Docs</a>.
<br><br>
-Generated on binarycpython git branch: development_0.9.3/2.2.1 git revision 65c361290c607d015366bca40731b634b361cfa0 url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c-python/-/tree/development_0.9.3/2.2.1">git url</a>.
+Generated on binarycpython git branch: development_0.9.3/2.2.1 git revision 7e2b822d04dcc5482eabcc79ac1fe76bc42a6ece url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c-python/-/tree/development_0.9.3/2.2.1">git url</a>.
<br><br>
Using binary_c with bit branch branch_david: git revision: "5845:20220107:201620bd7" url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c/-/tree/branch_david">git url</a>.
diff --git a/docs/build/html/population_extensions/grid_options_defaults.html b/docs/build/html/population_extensions/grid_options_defaults.html
index 48fefdc7e..9d073af62 100644
--- a/docs/build/html/population_extensions/grid_options_defaults.html
+++ b/docs/build/html/population_extensions/grid_options_defaults.html
@@ -242,7 +242,7 @@
provided by <a href="https://readthedocs.org">Read the Docs</a>.
<br><br>
-Generated on binarycpython git branch: development_0.9.3/2.2.1 git revision 65c361290c607d015366bca40731b634b361cfa0 url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c-python/-/tree/development_0.9.3/2.2.1">git url</a>.
+Generated on binarycpython git branch: development_0.9.3/2.2.1 git revision 7e2b822d04dcc5482eabcc79ac1fe76bc42a6ece url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c-python/-/tree/development_0.9.3/2.2.1">git url</a>.
<br><br>
Using binary_c with bit branch branch_david: git revision: "5845:20220107:201620bd7" url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c/-/tree/branch_david">git url</a>.
diff --git a/docs/build/html/population_extensions/gridcode.html b/docs/build/html/population_extensions/gridcode.html
index 043113bf3..e7144b601 100644
--- a/docs/build/html/population_extensions/gridcode.html
+++ b/docs/build/html/population_extensions/gridcode.html
@@ -148,8 +148,10 @@ Use at own risk.</p>
<li><p><strong>name</strong> (<code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code>) – <p>name of parameter used in the grid Python code.
This is evaluated as a parameter and you can use it throughout
the rest of the function</p>
-<p class="rubric">Examples</p>
-<p>name = ‘lnM_1’</p>
+<dl class="simple">
+<dt>Examples::</dt><dd><p>name = ‘lnM_1’</p>
+</dd>
+</dl>
</p></li>
<li><p><strong>parameter_name</strong> (<code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code>) – <p>name of the parameter in binary_c</p>
<p>This name must correspond to a Python variable of the same name,
@@ -166,36 +168,46 @@ called parameter_name</p>
</p></li>
<li><p><strong>range</strong> – <p>Range of values to take. Does not get used really, the samplerfunc is used to
get the values from</p>
-<p class="rubric">Examples</p>
-<p>range = [math.log(m_min), math.log(m_max)]</p>
+<dl class="simple">
+<dt>Examples::</dt><dd><p>range = [math.log(m_min), math.log(m_max)]</p>
+</dd>
+</dl>
</p></li>
<li><p><strong>samplerfunc</strong> (<code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code>) – <p>Function returning a list or numpy array of samples spaced appropriately.
You can either use a real function, or a string representation of a function call.</p>
-<p class="rubric">Examples</p>
-<p>samplerfunc = “self.const_linear(math.log(m_min), math.log(m_max), {})â€.format(resolution[‘M_1’])</p>
+<dl class="simple">
+<dt>Examples::</dt><dd><p>samplerfunc = “self.const_linear(math.log(m_min), math.log(m_max), {})â€.format(resolution[‘M_1’])</p>
+</dd>
+</dl>
</p></li>
<li><p><strong>precode</strong> (<code class="xref py py-data docutils literal notranslate"><span class="pre">Optional</span></code>[<code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code>]) – <p>Extra room for some code. This code will be evaluated within the loop of the
sampling function (i.e. a value for lnM_1 is chosen already)</p>
-<p class="rubric">Examples</p>
-<p>precode = ‘M_1=math.exp(lnM_1);’</p>
+<dl class="simple">
+<dt>Examples::</dt><dd><p>precode = ‘M_1=math.exp(lnM_1);’</p>
+</dd>
+</dl>
</p></li>
<li><p><strong>postcode</strong> (<code class="xref py py-data docutils literal notranslate"><span class="pre">Optional</span></code>[<code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code>]) – Code executed after the probability is calculated.</p></li>
<li><p><strong>probdist</strong> (<code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code>) – <p>Function determining the probability that gets assigned to the sampled parameter</p>
<p class="rubric">Examples</p>
-<p>probdist = ‘Kroupa2001(M_1)*M_1’</p>
+<p>probdist = ‘self.Kroupa2001(M_1)*M_1’</p>
</p></li>
<li><p><strong>dphasevol</strong> (<code class="xref py py-data docutils literal notranslate"><span class="pre">Union</span></code>[<code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code>, <code class="xref py py-class docutils literal notranslate"><span class="pre">int</span></code>]) – <p>part of the parameter space that the total probability is calculated with. Put to -1
-if you want to ignore any dphasevol calculations and set the value to 1
-.. rubric:: Examples</p>
-<p>dphasevol = ‘dlnM_1’</p>
+if you want to ignore any dphasevol calculations and set the value to 1</p>
+<dl class="simple">
+<dt>Examples::â€</dt><dd><p>dphasevol = ‘dlnM_1’</p>
+</dd>
+</dl>
</p></li>
-<li><p><strong>condition</strong> (<code class="xref py py-data docutils literal notranslate"><span class="pre">Optional</span></code>[<code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code>]) – <p>condition that has to be met in order for the grid generation to continue
-.. rubric:: Examples</p>
-<p>condition = ‘self.grid_options[‘binary’]==1’</p>
+<li><p><strong>condition</strong> (<code class="xref py py-data docutils literal notranslate"><span class="pre">Optional</span></code>[<code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code>]) – <p>condition that has to be met in order for the grid generation to continue</p>
+<dl class="simple">
+<dt>Examples::</dt><dd><p>condition = ‘self.grid_options[‘binary’]==1’</p>
+</dd>
+</dl>
</p></li>
<li><p><strong>gridtype</strong> (<code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code>) – Method on how the value range is sampled. Can be either ‘edge’ (steps starting at
the lower edge of the value range) or ‘centred’
-(steps starting at lower edge + 0.5 * stepsize).</p></li>
+(steps starting at <code class="docutils literal notranslate"><span class="pre">lower</span> <span class="pre">edge</span> <span class="pre">+</span> <span class="pre">0.5</span> <span class="pre">*</span> <span class="pre">stepsize</span></code>).</p></li>
<li><p><strong>dry_parallel</strong> (<code class="xref py py-data docutils literal notranslate"><span class="pre">Optional</span></code>[<code class="xref py py-class docutils literal notranslate"><span class="pre">bool</span></code>]) – If True, try to parallelize this variable in dry runs.</p></li>
<li><p><strong>topcode</strong> (<code class="xref py py-data docutils literal notranslate"><span class="pre">Optional</span></code>[<code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code>]) – Code added at the very top of the block.</p></li>
<li><p><strong>bottomcode</strong> (<code class="xref py py-data docutils literal notranslate"><span class="pre">Optional</span></code>[<code class="xref py py-class docutils literal notranslate"><span class="pre">str</span></code>]) – Code added at the very bottom of the block.</p></li>
@@ -282,7 +294,7 @@ of the self.grid_options[“_grid_variablesâ€] dictionary.</p>
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@@ -233,7 +233,7 @@ if grid_options[‘slurm’]==3, we are being called from the jobs to run the gr
provided by <a href="https://readthedocs.org">Read the Docs</a>.
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@@ -322,7 +322,7 @@ not that the integral is 1.0</p>
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index e57725141..28ee9f31e 100644
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@@ -199,7 +199,7 @@ dictionary</p>
provided by <a href="https://readthedocs.org">Read the Docs</a>.
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@@ -193,7 +193,7 @@ and returns what the parse_function returns</p>
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zytkow:[0,7]},titles:["Binary_c parameters","custom_logging_functions module","dicts module","ensemble module","Example notebooks","Example use case: Binary black hole systems","Example use case: Hertzsprung-Russell diagrams","Tutorial: Using the API functionality of binary_c-python","Example use case: Common-envelope evolution","Tutorial: Using custom logging routines with binary_c-python","Tutorial: Extra features and functionality of binary_c-python","Tutorial: Running individual systems with binary_c-python","Example use case: Zero-age stellar luminosity function in binaries","Example use case: Zero-age stellar luminosity function","Example use case: Massive star luminosity","Tutorial: Running populations with binary_c-python","Example use case: Solar system using the API functionality","Basic example","Binary_c and python example notebook","functions module","Population class module","Population grid code options","Welcome to binary_c-python\u2019s documentation!","Binarycpython code","plot_functions module","Population class extension: HPC module","Population class extension: Moe_di_Stefano_2017 module","Population class extension: analytics module","Population class extension: cache module","Population class extension: condor module","Population class extension: dataIO module","Population class extension: distribution_functions module","Population class extension: grid_logging module","Population class extension: grid_options_defaults module","Population class extension: gridcode module","Population class extension: metadata module","Population class extension: slurm module","Population class extension: spacing_functions module","Population class extension: version_info module","Python module for binary_c","run_system_wrapper module","stellar_types module","useful_funcs 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parameters","custom_logging_functions module","dicts module","ensemble module","Example notebooks","Example use case: Binary black hole systems","Example use case: Hertzsprung-Russell diagrams","Tutorial: Using the API functionality of binary_c-python","Example use case: Common-envelope evolution","Tutorial: Using custom logging routines with binary_c-python","Tutorial: Extra features and functionality of binary_c-python","Tutorial: Running individual systems with binary_c-python","Example use case: Zero-age stellar luminosity function in binaries","Example use case: Zero-age stellar luminosity function","Example use case: Massive star luminosity","Tutorial: Running populations with binary_c-python","Example use case: Solar system using the API functionality","Basic example","Binary_c and python example notebook","functions module","Population class module","Population grid code options","Welcome to binary_c-python\u2019s documentation!","Binarycpython code","plot_functions 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\ No newline at end of file
diff --git a/docs/build/html/stellar_types.html b/docs/build/html/stellar_types.html
index c9dd80431..c14f0d2e5 100644
--- a/docs/build/html/stellar_types.html
+++ b/docs/build/html/stellar_types.html
@@ -153,7 +153,7 @@
provided by <a href="https://readthedocs.org">Read the Docs</a>.
<br><br>
-Generated on binarycpython git branch: development_0.9.3/2.2.1 git revision 65c361290c607d015366bca40731b634b361cfa0 url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c-python/-/tree/development_0.9.3/2.2.1">git url</a>.
+Generated on binarycpython git branch: development_0.9.3/2.2.1 git revision 7e2b822d04dcc5482eabcc79ac1fe76bc42a6ece url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c-python/-/tree/development_0.9.3/2.2.1">git url</a>.
<br><br>
Using binary_c with bit branch branch_david: git revision: "5845:20220107:201620bd7" url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c/-/tree/branch_david">git url</a>.
diff --git a/docs/build/html/useful_funcs.html b/docs/build/html/useful_funcs.html
index 6600bdf1b..afe07d32b 100644
--- a/docs/build/html/useful_funcs.html
+++ b/docs/build/html/useful_funcs.html
@@ -350,7 +350,7 @@ determine if two stars collide on the ZAMS</p>
provided by <a href="https://readthedocs.org">Read the Docs</a>.
<br><br>
-Generated on binarycpython git branch: development_0.9.3/2.2.1 git revision 65c361290c607d015366bca40731b634b361cfa0 url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c-python/-/tree/development_0.9.3/2.2.1">git url</a>.
+Generated on binarycpython git branch: development_0.9.3/2.2.1 git revision 7e2b822d04dcc5482eabcc79ac1fe76bc42a6ece url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c-python/-/tree/development_0.9.3/2.2.1">git url</a>.
<br><br>
Using binary_c with bit branch branch_david: git revision: "5845:20220107:201620bd7" url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c/-/tree/branch_david">git url</a>.
diff --git a/docs/source/_templates/footer.html b/docs/source/_templates/footer.html
index fcd772809..efaf1b9ad 100644
--- a/docs/source/_templates/footer.html
+++ b/docs/source/_templates/footer.html
@@ -2,7 +2,7 @@
{%- block extrafooter %}
<br><br>
-Generated on binarycpython git branch: development_0.9.3/2.2.1 git revision 65c361290c607d015366bca40731b634b361cfa0 url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c-python/-/tree/development_0.9.3/2.2.1">git url</a>.
+Generated on binarycpython git branch: development_0.9.3/2.2.1 git revision 7e2b822d04dcc5482eabcc79ac1fe76bc42a6ece url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c-python/-/tree/development_0.9.3/2.2.1">git url</a>.
<br><br>
Using binary_c with bit branch branch_david: git revision: "5845:20220107:201620bd7" url: <a href="https://gitlab.surrey.ac.uk/ri0005/binary_c/-/tree/branch_david">git url</a>.
diff --git a/docs/source/badges/test_coverage.svg b/docs/source/badges/test_coverage.svg
index d76f04f02..6d68f472b 100644
--- a/docs/source/badges/test_coverage.svg
+++ b/docs/source/badges/test_coverage.svg
@@ -9,13 +9,13 @@
</mask>
<g mask="url(#a)">
<path fill="#555" d="M0 0h63v20H0z"/>
- <path fill="#fe7d37" d="M63 0h36v20H63z"/>
+ <path fill="#dfb317" d="M63 0h36v20H63z"/>
<path fill="url(#b)" d="M0 0h99v20H0z"/>
</g>
<g fill="#fff" text-anchor="middle" font-family="DejaVu Sans,Verdana,Geneva,sans-serif" font-size="11">
<text x="31.5" y="15" fill="#010101" fill-opacity=".3">coverage</text>
<text x="31.5" y="14">coverage</text>
- <text x="80" y="15" fill="#010101" fill-opacity=".3">51%</text>
- <text x="80" y="14">51%</text>
+ <text x="80" y="15" fill="#010101" fill-opacity=".3">64%</text>
+ <text x="80" y="14">64%</text>
</g>
</svg>
--
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