diff --git a/tests/core/test_custom_logging_code.py b/tests/core/test_custom_logging_code.py
new file mode 100644
index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391
diff --git a/tests/test_persistent_data.py b/tests/core/test_persistent_data.py
similarity index 100%
rename from tests/test_persistent_data.py
rename to tests/core/test_persistent_data.py
diff --git a/tests/test_return_store_memaddr.py b/tests/core/test_return_store_memaddr.py
similarity index 100%
rename from tests/test_return_store_memaddr.py
rename to tests/core/test_return_store_memaddr.py
diff --git a/tests/test_run_system.py b/tests/core/test_run_system.py
similarity index 100%
rename from tests/test_run_system.py
rename to tests/core/test_run_system.py
diff --git a/tests/extra_tests.py b/tests/extra_tests.py
new file mode 100644
index 0000000000000000000000000000000000000000..279e9d970650192dca306dc346c55b45bb33e2a4
--- /dev/null
+++ b/tests/extra_tests.py
@@ -0,0 +1,36 @@
+import subprocess
+import os
+
+# Script containing extra tests
+# TODO: store the version somewhere
+
+def test_binary_c_installed():
+ binary_c_dir = os.getenv("BINARY_C", None)
+
+ assert binary_c_dir is not None, "Error: the BINARY_C environment variable is not set."
+ assert os.path.isfile(os.path.join(binary_c_dir, 'binary_c')), "binary_c doesn't exist!"
+
+def test_binary_c_version():
+ required_binary_c_versions = ['2.1.7']
+
+ binary_c_dir = os.getenv("BINARY_C", None)
+ binary_c_config = os.path.join(binary_c_dir, "binary_c-config")
+
+ installed_binary_c_version = (
+ subprocess.run(
+ [binary_c_config, "version"], stdout=subprocess.PIPE, check=True
+ )
+ .stdout.decode("utf-8")
+ .split()
+ )[0]
+
+ message = """
+ The binary_c version that is installed ({}) does not match the binary_c versions ({})
+ that this release of the binary_c python module requires.
+ """.format(installed_binary_c_version, required_binary_c_versions)
+ assert installed_binary_c_version in required_binary_c_versions, message
+###
+
+if __name__ == "__main__":
+ test_binary_c_version()
+ test_binary_c_installed()
\ No newline at end of file
diff --git a/tests/function_tests.py b/tests/function_tests.py
index 107e19008f4466940da3bbd1745a2619ab1b1095..a10e44dbe42b6315cddd3e20608b5c2a299a6f25 100644
--- a/tests/function_tests.py
+++ b/tests/function_tests.py
@@ -1,11 +1,54 @@
-from binarycpython.utils.functions import get_help_super, get_help_all, get_help
+from binarycpython.utils.functions import (
+ get_help_super,
+ get_help_all,
+ get_help,
+)
#############################
-# File containing some tests to function. These are not unit tests where output is compared.
+# Script that contains unit tests for functions from the binarycpython.utils.functions file
+def test_get_help_super():
+ """
+ Function to test the get_help_super function
+ """
-## Help functionality
-print(get_help_super(print_help=True, return_dict=False, fail_silently=False))
-print(get_help_all(print_help=True))
-print(get_help("M_1"))
-#
+ get_help_super_output = get_help_super()
+ get_help_super_keys = get_help_super_output.keys()
+
+ assert 'stars' in get_help_super_keys, "missing section"
+ assert 'binary' in get_help_super_keys, "missing section"
+ assert 'nucsyn' in get_help_super_keys, "missing section"
+ assert 'output' in get_help_super_keys, "missing section"
+ assert 'i/o' in get_help_super_keys, "missing section"
+ assert 'algorithms' in get_help_super_keys, "missing section"
+ assert 'misc' in get_help_super_keys, "missing section"
+
+ print(get_help_super_output.keys())
+
+def test_get_help_all():
+ """
+ Function to test the get_help_all function
+ """
+
+ get_help_all_output = get_help_all(print_help=False)
+ get_help_all_keys = get_help_all_output.keys()
+
+ assert 'stars' in get_help_all_keys, "missing section"
+ assert 'binary' in get_help_all_keys, "missing section"
+ assert 'nucsyn' in get_help_all_keys, "missing section"
+ assert 'output' in get_help_all_keys, "missing section"
+ assert 'i/o' in get_help_all_keys, "missing section"
+ assert 'algorithms' in get_help_all_keys, "missing section"
+ assert 'misc' in get_help_all_keys, "missing section"
+
+def test_get_help():
+ """
+ Function to test the get_help function
+ """
+
+ assert get_help("M_1", print_help=False)['parameter_name'] == 'M_1', "get_help('M_1') should return the correct parameter name"
+
+if __name__ == "__main__":
+ test_get_help()
+ test_get_help_all()
+ test_get_help_super()
diff --git a/tests/main.py b/tests/main.py
new file mode 100644
index 0000000000000000000000000000000000000000..728e1fa1da9c1934941c14dc36c9c4f2e5525b9d
--- /dev/null
+++ b/tests/main.py
@@ -0,0 +1 @@
+# Main file for the tests. This file imports all the combined_test functions from all files.
\ No newline at end of file
diff --git a/tests/population/grid_tests.py b/tests/population/grid_tests.py
index b1874816134afc09dbf43b6dd6af52150bc3d2ed..2b87c8f3f686e55807e7782fab5cf3d9703a37d6 100644
--- a/tests/population/grid_tests.py
+++ b/tests/population/grid_tests.py
@@ -4,218 +4,289 @@ import time
import pickle
import sys
-import matplotlib.pyplot as plt
-
+# import matplotlib.pyplot as plt
from binarycpython.utils.grid import Population
-from binarycpython.utils.functions import get_help_all, get_help
-
-## Script is intended for some testing of grid functionality. Its a bit random, not really structured tbh
-test_pop = Population()
-
-## Setting values
-# print(test_pop.bse_options['M_1'])
-# print(test_pop.bse_options['M_2'])
-# test_pop.set(M_1=10, M_2=500)
-# print(test_pop.bse_options['M_1'])
-# print(test_pop.bse_options['M_2'])
-test_pop.set(
- M_1=10,
- separation=0,
- orbital_period=4580,
- max_evolution_time=15000,
- eccentricity=0.02,
+from binarycpython.utils.functions import (
+ get_help_all,
+ get_help,
+ output_lines,
)
-# print(test_pop.bse_options)
-# print(len(test_pop.return_binary_c_defaults()))
-# print('\n\n')
-# print(len(test_pop.cleanup_defaults()))
+def test_setup_population():
+ """
+ Unit test for setting up the population object
+ """
-line = test_pop.return_argline(test_pop.cleanup_defaults())
+ test_pop = Population()
-## Testing single evolution
-# test_pop.evolve_single()
-# test_pop.test_evolve_single()
+ assert isinstance(test_pop, Population), "Population object not created properly"
-## Setting custom value
-# test_pop.set(data_dir=os.path.join(os.environ['BINARYC_DATA_ROOT'], 'development_example'))
-# print(test_pop.custom_options['data_dir'])
+def test_set_value_population():
+ """
+ Unit test for setting values in the population object
+ """
-## printing all options
-# print(json.dumps(test_pop.return_population_settings(), indent=4))
+ test_pop = Population()
+
+ test_pop.set(
+ verbosity=1,
+ )
+
+ test_pop.set(
+ M_1=10,
+ data_dir='/tmp/binary-c/output',
+ ensemble_filter_SUPERNOVAE=1,
+ )
-## return arglines:
-# test_pop.set(M_1=10, M_2=500)
-# print(test_pop.return_argline())
-# test_pop.return_argline()
+ assert test_pop.bse_options['M_1'] == 10, 'BSE options not correctly set'
+ assert test_pop.grid_options['verbosity'] == 1, 'Grid options not correctly set'
+ assert test_pop.custom_options['data_dir'] == '/tmp/binary-c/output', 'Custom options not correctly set'
+ assert test_pop.bse_options['ensemble_filter_SUPERNOVAE'] == 1, "Parameters are not getting caught correctly (The wildcards of parameters with %d in their name)"
-## return version info
-# version_info = test_pop.return_binary_c_version_info()
-# print(version_info)
+def test_set_argline_output_population():
+ """
+ Unit test for setting values in the population object
+ """
+ test_pop = Population()
-## Use custom arg file
-# test_pop.evolve_population(custom_arg_file='/home/david/projects/binary_c_root/binary_c-python/tests/population/custom_arg_file.txt')
+ test_pop.set(
+ M_1=10,
+ M_2 = 14.0, # Msun
+ separation = 0, # 0 = ignored, use period
+ orbital_period = 4530.0, # days
+ eccentricity = 0.0,
+ metallicity = 0.02,
+ max_evolution_time = 15000,
+ verbosity=1,
+ )
-## Custom logging:
-# test_pop.set(C_auto_logging={'MY_HEADER_LINE': ['star[0].mass', 'star[1].mass', 'model.probability']})
-# test_pop.set(C_logging_code='Printf("MY_STELLAR_DATA time=%g mass=%g radius=%g\\n", stardata->model.time, stardata->star[0].mass, stardata->star[0].radius);')
-# test_pop.evolve_population()
+ argline = test_pop.return_argline()
+ assert argline == "binary_c M_1 10 M_2 14.0 eccentricity 0.0 max_evolution_time 15000 metallicity 0.02 orbital_period 4530.0 separation 0", "Argline not constructed correctly. Check if values are set properly."
+def test_version_info_dict_population():
+ """
+ Unit test for setting values in the population object
-## Custom logging with bigger print statement:
-# test_pop.set(M_1=100, M_2=1, metallicity=0.0002, orbital_period=500000000)
-# test_pop.set(
-# C_logging_code="""
-# if(stardata->star[0].stellar_type>=MS)
-# {
-# if (stardata->model.time < stardata->model.max_evolution_time)
-# {
-# Printf("DAVID_SCO %30.12e %g %g %g %g %d %d\\n",
-# //
-# stardata->model.time, // 1
-
-# stardata->star[0].mass, //2
-# stardata->previous_stardata->star[0].mass, //3
-
-# stardata->star[0].radius, //4
-# stardata->previous_stardata->star[0].radius, //5
-
-# stardata->star[0].stellar_type, //6
-# stardata->previous_stardata->star[0].stellar_type //7
-# );
-# };
-# /* Kill the simulation to save time */
-# // stardata->model.max_evolution_time = stardata->model.time - stardata->model.dtm;
-# };
-# """
-# )
-# test_pop.evolve_population()
+ TODO: Add status to output of the version_info, with -1 if there are unmatched items
+ """
+ test_pop = Population()
-## Help all
-# print(get_help_all(return_dict=True))
+ # return version info
+ version_info = test_pop.return_binary_c_version_info(parsed=True)
+ version_info_keys = version_info.keys()
-# get_help_all()
-# print(get_help('M_1', print_help=False, return_dict=True))
+ assert "L_SUN" in version_info_keys, "Missing item in version info"
+ assert "ADAPTIVE_RLOF_LOG" in version_info_keys, "Missing item in version info"
+ assert "GSL_VERSION" in version_info_keys, "Missing item in version info"
+ assert "git_revision" in version_info_keys, "Missing item in version info"
+def test_settings_output_population():
+ """
+ Unit test for outputting the settings of the population dict object
+ """
+
+ test_pop = Population()
+
+ # return version info
+ population_settings = test_pop.return_population_settings()
+ population_settings_keys = population_settings.keys()
-## return all info:
-# print(json.dumps(test_pop.return_all_info(), indent=4))
-# test_pop.export_all_info(outfile=os.path.join(os.getcwd(), "test_output.txt"))
+ assert 'bse_options' in population_settings_keys, "Missing information in the population_settings dict"
+ assert 'grid_options' in population_settings_keys, "Missing information in the population_settings dict"
+ assert 'custom_options' in population_settings_keys, "Missing information in the population_settings dict"
-################# Parse function
-## Testing some stuff out with giving a parse_function.
-# test_pop.set(
-# C_logging_code="""
-# if(stardata->star[0].stellar_type>=NS)
-# {
-# if (stardata->model.time < stardata->model.max_evolution_time)
-# {
-# Printf("DAVID_SCO %30.12e %g %g %g %g %d %d\\n",
-# //
-# stardata->model.time, // 1
+def test_all_info_population():
+ """
+ Unit test for outputting all information of the population object
+ """
-# stardata->star[0].mass, //2
-# stardata->previous_stardata->star[0].mass, //3
+ test_pop = Population()
+
+ # return all info:
+ all_info_dict = test_pop.return_all_info()
+ all_info_keys = all_info_dict.keys()
-# stardata->star[0].radius, //4
-# stardata->previous_stardata->star[0].radius, //5
+ assert 'population_settings' in all_info_keys, "Missing information in the all_info settings dict"
+ assert 'binary_c_defaults' in all_info_keys, "Missing information in the all_info settings dict"
+ assert 'binary_c_version_info' in all_info_keys, "Missing information in the all_info settings dict"
+ assert 'binary_c_help_all' in all_info_keys, "Missing information in the all_info settings dict"
+
+def test_evolve_single_system_population():
+ """
+ Unit test for the evolve_single_system function of the population object
+ """
+
+ test_pop = Population()
+
+ test_pop.set(
+ M_1=10,
+ M_2 = 14.0, # Msun
+ separation = 0, # 0 = ignored, use period
+ orbital_period = 4530.0, # days
+ eccentricity = 0.0,
+ metallicity = 0.02,
+ max_evolution_time = 15000,
+ verbosity=0,
+ )
+
+ output = test_pop.evolve_single()
+
+ assert "SINGLE_STAR_LIFETIME" in output, "Failed to evolve a system"
+
+# def test_custom_logging_memory_adress():
+
+def test_C_auto_logging_population():
+ """
+ Unit test for the creating a custom logging output by setting the
+ C_auto_logging value with a list containing a headerline as key and a list of parameters as value
+ """
+
+ test_pop = Population()
+
+ test_pop.set(
+ M_1 = 14,
+ M_2 = 10.0, # Msun
+ separation = 0, # 0 = ignored, use period
+ orbital_period = 4530.0, # days
+ eccentricity = 0.0,
+ metallicity = 0.02,
+ max_evolution_time = 15000,
+ verbosity=0,
+ )
+
+
+ test_pop.set(C_auto_logging={'MY_HEADER_LINE': ['star[0].mass', 'star[1].mass', 'model.probability']})
+
+ output = test_pop.evolve_single()
-# stardata->star[0].stellar_type, //6
-# stardata->previous_stardata->star[0].stellar_type //7
-# );
-# };
-# /* Kill the simulation to save time */
-# stardata->model.max_evolution_time = stardata->model.time - stardata->model.dtm;
-# };
-# """
-# )
+ print(output.splitlines()[0].split())
+
+ first_line = output.splitlines()[0].split()
+
+ assert first_line[0] == "MY_HEADER_LINE" , "Failed to set the custom logging correctly"
+ assert first_line[1] == "14" , "Failed to set the custom logging correctly. First mass should be 14"
+ assert first_line[2] == "10" , "Failed to set the custom logging correctly. Second mass should be 10"
+ assert first_line[3] == "1" , "Failed to set the custom logging correctly. Probability should be 1"
+
+def test_C_logging_code_population():
+ """
+ Unit test for the creating a custom logging output by setting the
+ C_logging_code which contains the exact print statement (including possible logic).
+ This will be evaluated and put into binary_c
+ """
+
+ test_pop = Population()
+
+ test_pop.set(
+ M_1 = 14,
+ M_2 = 10.0, # Msun
+ separation = 10000, # 0 = ignored, use period
+ # orbital_period = 4530.0, # days
+ eccentricity = 0.0,
+ metallicity = 0.02,
+ max_evolution_time = 15000,
+ verbosity=0,
+ )
+
+ test_pop.set(C_logging_code='Printf("MY_STELLAR_DATA mass=%g separation=%g probability=%g\\n", stardata->star[0].mass, stardata->common.orbit.separation, stardata->model.probability);')
+
+ output = test_pop.evolve_single()
+ first_line = output.splitlines()[0].split()
+
+ assert first_line[0] == "MY_STELLAR_DATA" , "Failed to set the custom logging correctly. Headerline should be MY_STELLAR_DATA"
+ assert first_line[1] == "mass=14" , "Failed to set the custom logging correctly. First mass should be 14"
+ assert first_line[2] == "separation=10000" , "Failed to set the custom logging correctly. Separation should be 10000"
+ assert first_line[3] == "probability=1" , "Failed to set the custom logging correctly. Probability should be 1"
+
+def parse_function(self, output):
+ """
+ Dummy parse function for handling the output of a system
+ """
+
+ parameters = ['mass_1', 'separation', 'probability']
+ separator='\t'
+
+ outfilename = os.path.join(self.grid_options['tmp_dir'], 'output_parse_function_test.txt')
+ if os.path.isfile(outfilename):
+ os.remove(outfilename)
+
+ for el in output_lines(output):
+ headerline = el.split()[0]
+
+ if (headerline=='MY_STELLAR_DATA'):
+ values = el.split()[1:]
+ if not os.path.exists(outfilename):
+ with open(outfilename, 'w') as f:
+ f.write(separator.join(parameters)+'\n')
+
+ with open(outfilename, 'a') as f:
+ f.write(separator.join(values)+'\n')
+
+def test_parse_function_population():
+ """
+ Unit test to test the ise of a parsing function for the output
+ """
+
+ test_pop = Population()
+
+ test_pop.set(
+ M_1=10,
+ M_2 = 14.0, # Msun
+ separation = 0, # 0 = ignored, use period
+ orbital_period = 4530.0, # days
+ eccentricity = 0.0,
+ metallicity = 0.02,
+ max_evolution_time = 15000,
+ verbosity=0,
+ )
+
+ test_pop.set(
+ C_logging_code='Printf("MY_STELLAR_DATA mass=%g separation=%g probability=%g\\n", stardata->star[0].mass, stardata->common.orbit.separation, stardata->model.probability);'
+ )
+
+ test_pop.set(
+ parse_function=parse_function
+ )
+
+ # Run with parse function
+ test_pop.evolve_single(parse_function)
+
+ outfilename = os.path.join(test_pop.grid_options['tmp_dir'], 'output_parse_function_test.txt')
+ assert os.path.isfile(outfilename), "Output file not created!"
+
+ with open(outfilename, 'r') as outfile:
+ output = outfile.readlines()
+ first_line_split = output[0].strip().split("\t")
+
+ assert first_line_split[0] == 'mass_1', "Output header not created correctly"
+ assert first_line_split[1] == 'separation', "Output header not created correctly"
+ assert first_line_split[2] == 'probability', "Output header not created correctly"
+ assert len(output) > 1, "File doesn't seem to contain any real data"
+
+if __name__ == "__main__":
+ # test_setup_population()
+ # test_set_value_population()
+ # test_set_argline_output_population()
+ # test_version_info_dict_population()
+ # test_settings_output_population()
+ # test_all_info_population()
+ # test_evolve_single_system_population()
+ # test_C_auto_logging_population()
+ # test_C_logging_code_population()
+ # test_parse_function_population()
+ print('yo')
+
+quit()
-# def output_lines(output):
-# """
-# Function that outputs the lines that were recieved from the binary_c run.
-# """
-# return output.splitlines()
-
-# def parse_function(self, output):
-# # extract info from the population instance
-# # TODO: think about whether this is smart. Passing around this object might be an overkill
-
-# # Get some information from the
-# data_dir = self.custom_options['data_dir']
-# base_filename = self.custom_options['base_filename']
-# outfilename = os.path.join(data_dir, base_filename)
-
-# # TODO: make population settings available in this function
-# for el in output_lines(output):
-# headerline = el.split()[0]
-
-# if (headerline=='DAVID_SCO'):
-# parameters = ['time', 'mass_1', 'prev_mass_1', 'radius_1', 'prev_radius_1', 'stellar_type_1', 'prev_stellar_type_1']
-# values = el.split()[1:]
-# seperator='\t'
-
-# if not os.path.exists(outfilename):
-# with open(outfilename, 'w') as f:
-# f.write(seperator.join(parameters)+'\n')
-
-# with open(outfilename, 'a') as f:
-# f.write(seperator.join(values)+'\n')
-
-
-# #test_pop.evolve_single(parse_function)
-# test_pop.set(M_1=90, data_dir=os.path.join(os.environ['BINARYC_DATA_ROOT'], 'testing_python'), base_filename='test_pop.dat')
-# test_pop.evolve_single(parse_function)
-# test_pop.set(M_1=80)
-# test_pop.evolve_single(parse_function)
-# test_pop.set(M_1=70)
-# test_pop.evolve_single(parse_function)
-# test_pop.set(M_1=60)
-# test_pop.evolve_single(parse_function)
-
-##################
-## CHeck size of commands:
-## Using pickle to dump it.
-## https://stackoverflow.com/questions/563840/how-can-i-check-the-memory-usage-of-objects-in-ipython/565382#565382
-
-# def generate_commands_return_size(amt_systems):
-# print("Doing {} systems".format(amt_systems))
-# start_generate_time = time.time()
-# commands = [test_pop.return_argline() for el in range(amt_systems)]
-# stop_generate_time = time.time()
-
-# size = sys.getsizeof(pickle.dumps(commands))
-# size_in_mb = size/(1024*1024)
-# return size_in_mb
-
-# amounts = [1, 10, 100, 1000, 10000, 100000, 1000000, 10000000]
-# sizes = []
-# for amount in amounts:
-# sizes.append(generate_commands_return_size(amount))
-
-
-# plt.title('size scaling for binary_c commands with:\n`{}`'.format(test_pop.return_argline()))
-# plt.plot(amounts, sizes, 'bo', label='MB for ')
-# plt.legend()
-# plt.xlabel("Amount of systems")
-# plt.ylabel("Size in MB")
-# plt.xscale('log')
-# plt.yscale('log')
-# plt.savefig('sizes_for_commands.png')
-# plt.show()
-
-# def ding(val):
-# return val
-# test_pop.set(extra_prob_function=ding)
-
-
-### Cleaning up custom logging code
-
-# test_pop.set(C_logging_code='Printf("MY_STELLAR_DATA time=%g mass=%g radius=%g\\n", stardata->model.time, stardata->star[0].mass, stardata->star[0].radius);')
-# print(test_pop.evolve_single())
-# quit()
+# print(len(test_pop.return_binary_c_defaults()))
+# print('\n\n')
+# print(len(test_pop.cleanup_defaults()))
+
+## Use custom arg file
+# test_pop.evolve_population(custom_arg_file='/home/david/projects/binary_c_root/binary_c-python/tests/population/custom_arg_file.txt')
### Grid generating testing
diff --git a/tests/population/surreypc_errorlog.txt b/tests/population/surreypc_errorlog.txt
deleted file mode 100644
index 399653eacf83b1f17618043935584d0dfd7612d1..0000000000000000000000000000000000000000
--- a/tests/population/surreypc_errorlog.txt
+++ /dev/null
@@ -1,81 +0,0 @@
-adding: C_logging_code=
-if(stardata->star[0].SN_type != SN_NONE)
-{
- if (stardata->model.time < stardata->model.max_evolution_time)
- {
- Printf("DAVID_SN %30.12e %g %g %g %d\n",
- //
- stardata->model.time, // 1
- stardata->star[0].mass, //2
- stardata->previous_stardata->star[0].mass, //3
- stardata->star[0].pms_mass, //4
- stardata->star[0].SN_type //5
- );
- };
- /* Kill the simulation to save time */
- stardata->model.max_evolution_time = stardata->model.time - stardata->model.dtm;
-};
- to grid_options
-adding: separation=1000000000 to BSE_options
-adding: orbital_period=400000000 to BSE_options
-adding: metallicity=0.002 to BSE_options
-!! Key doesnt match previously known parameter: adding: data_dir=/vol/ph/astro_code/dhendriks/binaryc/results/testing_python/multiprocessing2/surreypc to custom_options
-/usr/bin/ld: /tmp/ccca3KKm.o: relocation R_X86_64_32 against `.rodata.str1.1' can not be used when making a shared object; recompile with -fPIC
-/tmp/ccca3KKm.o: error adding symbols: Bad value
-collect2: error: ld returned 1 exit status
-Traceback (most recent call last):
- File "multiprocessing_via_population_comparison.py", line 106, in <module>
- res = test_pop.evolve_population_comparison(parse_function, amt=int(amt_systems), nodes=int(amt_nodes))
- File "/vol/ph/astro_code/dhendriks/binaryc/binary_c-python/binarycpython/utils/grid.py", line 456, in evolve_population_comparison
- self.set_custom_logging()
- File "/vol/ph/astro_code/dhendriks/binaryc/binary_c-python/binarycpython/utils/grid.py", line 364, in set_custom_logging
- ] = create_and_load_logging_function(custom_logging_code)
- File "/vol/ph/astro_code/dhendriks/binaryc/binary_c-python/binarycpython/utils/custom_logging_functions.py", line 302, in create_and_load_logging_function
- outfile_name=library_name,
- File "/vol/ph/astro_code/dhendriks/binaryc/binary_c-python/binarycpython/utils/custom_logging_functions.py", line 262, in compile_shared_lib
- res = subprocess.check_output("{command}".format(command=command), shell=True)
- File "/user/HS128/dh00601/.pyenv/versions/3.6.4/lib/python3.6/subprocess.py", line 336, in check_output
- **kwargs).stdout
- File "/user/HS128/dh00601/.pyenv/versions/3.6.4/lib/python3.6/subprocess.py", line 418, in run
- output=stdout, stderr=stderr)
-subprocess.CalledProcessError: Command 'gcc -DALIGNSIZE=8 -std=gnu99 -march=native -mtune=native -ffast-math -fno-associative-math -fno-finite-math-only -fsignaling-nans -fomit-frame-pointer -DCPUFREQ=3600 -DOPERATING_SYSTEM=linux -DLINUX -DPOSIX -DLARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DFPU_CONTROL -DGIT_REVISION=4797:20200127:369f3df -DGIT_URL=gitlab@gitlab.eps.surrey.ac.uk:ri0005/binary_c.git -D__HAVE_LIBC__ -D__HAVE_LIBGSL__ -I/user/HS128/dh00601/.local/include -DUSE_GSL -D__HAVE_LIBGSLCBLAS__ -D__HAVE_LIBBACKTRACE__ -D__HAVE_LIBBSD__ -D__HAVE_LIBM__ -D__HAVE_IEEE754_H__ -D__HAVE_DRAND48__ -D__HAVE_HSEARCH_DATA__ -D__HAVE_MALLOC_H__ -D__HAVE_SETITIMER__ -D__HAVE_PKG_CONFIG__ -D__HAVE_VALGRIND__ -D__SHOW_STARDATA__ -D__DIFF_STARDATA__ -O3 -shared -D_SEARCH_H -L/vol/ph/astro_code/dhendriks/binaryc/binary_c/src -L/user/HS128/dh00601/.local/lib -L/vol/ph/astro_code/dhendriks/binaryc/binary_c/src -lbinary_c -lc -lgsl -lgsl -lgslcblas -lm -lgslcblas -lbacktrace -lbsd -lm -o /tmp/binary_c_python/libcustom_logging_db727f25d8e14d4fbeaed42a32f23764.so /tmp/binary_c_python/custom_logging.c -I/vol/ph/astro_code/dhendriks/binaryc/binary_c -I/vol/ph/astro_code/dhendriks/binaryc/binary_c/src -I/usr/include -I/usr/local/include -I/vol/ph/astro_code/dhendriks/binaryc/binary_c/src' returned non-zero exit status 1.
-
-
-
-###
-https://github.com/pybind/pybind11/issues/1234 might be useful
-
-
-(binaryc_py3.6.4) ➜ population git:(population) ✗ machine_overview
-System: Host: phws71 Kernel: 4.4.0-171-generic x86_64 (64 bit gcc: 5.4.0) Desktop: Xfce 4.12.3 (Gtk 2.24.28)
- Distro: Ubuntu 16.04 xenial
-Machine: System: Dell product: OptiPlex 7050
- Mobo: Dell model: 0XHGV1 v: A01 Bios: Dell v: 1.8.3 date: 03/23/2018
-CPU: Quad core Intel Core i5-6500 (-MCP-) cache: 6144 KB
- flags: (lm nx sse sse2 sse3 sse4_1 sse4_2 ssse3 vmx) bmips: 25536
- clock speeds: max: 3600 MHz 1: 864 MHz 2: 881 MHz 3: 863 MHz 4: 849 MHz
-Graphics: Card: Intel HD Graphics 530 bus-ID: 00:02.0
- Display Server: X.Org 1.18.4 drivers: intel (unloaded: fbdev,vesa)
- Resolution: 1920x1080@60.00hz, 1920x1080@60.00hz
- GLX Renderer: Mesa DRI Intel HD Graphics 530 (Skylake GT2)
- GLX Version: 3.0 Mesa 18.0.5 Direct Rendering: Yes
-Audio: Card Intel 200 Series PCH HD Audio driver: snd_hda_intel bus-ID: 00:1f.3
- Sound: Advanced Linux Sound Architecture v: k4.4.0-171-generic
-Network: Card: Intel Ethernet Connection (5) I219-LM driver: e1000e v: 3.2.6-k bus-ID: 00:1f.6
- IF: enp0s31f6 state: up speed: 1000 Mbps duplex: full mac: 8c:ec:4b:7b:54:21
-Drives: HDD Total Size: 512.1GB (25.5% used) ID-1: /dev/sda model: ADATA_SSD_DM900 size: 512.1GB
-Partition: ID-1: / size: 184G used: 55G (32%) fs: ext4 dev: /dev/dm-0
- ID-2: /tmp size: 9.1G used: 38M (1%) fs: ext4 dev: /dev/dm-2
- ID-3: swap-1 size: 8.19GB used: 0.24GB (3%) fs: swap dev: /dev/dm-1
-RAID: No RAID devices: /proc/mdstat, md_mod kernel module present
-Sensors: System Temperatures: cpu: 29.8C mobo: 27.8C
- Fan Speeds (in rpm): cpu: N/A
-Info: Processes: 308 Uptime: 10 days Memory: 6456.8/15911.6MB Init: systemd runlevel: 5 Gcc sys: 5.4.0
- Client: Shell (zsh 5.6.2) inxi: 2.2.35
-
-(binaryc_py3.6.4) ➜ population git:(population) ✗ gcc --version
-gcc (Ubuntu 5.4.0-6ubuntu1~16.04.12) 5.4.0 20160609
-Copyright (C) 2015 Free Software Foundation, Inc.
-This is free software; see the source for copying conditions. There is NO
-warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
-
diff --git a/tests/population/profiling/profile_run.txt b/tests/profiling/profile_run.txt
similarity index 100%
rename from tests/population/profiling/profile_run.txt
rename to tests/profiling/profile_run.txt
diff --git a/tests/population/profiling/profile_test.txt b/tests/profiling/profile_test.txt
similarity index 100%
rename from tests/population/profiling/profile_test.txt
rename to tests/profiling/profile_test.txt
diff --git a/tests/population/profiling/readout_profile.py b/tests/profiling/readout_profile.py
similarity index 100%
rename from tests/population/profiling/readout_profile.py
rename to tests/profiling/readout_profile.py
diff --git a/tests/population/scaling/argparse_setup.py b/tests/scaling/argparse_setup.py
similarity index 100%
rename from tests/population/scaling/argparse_setup.py
rename to tests/scaling/argparse_setup.py
diff --git a/tests/population/scaling/plot_scaling.py b/tests/scaling/plot_scaling.py
similarity index 100%
rename from tests/population/scaling/plot_scaling.py
rename to tests/scaling/plot_scaling.py
diff --git a/tests/population/scaling/scaling_functions.py b/tests/scaling/scaling_functions.py
similarity index 100%
rename from tests/population/scaling/scaling_functions.py
rename to tests/scaling/scaling_functions.py
diff --git a/tests/scaling/scaling_plots/speedup_scaling_Astro1.eps b/tests/scaling/scaling_plots/speedup_scaling_Astro1.eps
new file mode 100644
index 0000000000000000000000000000000000000000..db04cdb492269bb70a5f374dd791b1b24f254d19
--- /dev/null
+++ b/tests/scaling/scaling_plots/speedup_scaling_Astro1.eps
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--- /dev/null
+++ b/tests/scaling/scaling_results/david-Lenovo-IdeaPad-S340-14IWL_200_systems.json
@@ -0,0 +1,24 @@
+{
+ "amt_systems": 200,
+ "hostname": "david-Lenovo-IdeaPad-S340-14IWL",
+ "amt_logical_cores": 4,
+ "amt_of_physical_cores": 2,
+ "testcase": "linear vs MP batched",
+ "linear": [
+ 16.011094570159912
+ ],
+ "mp": {
+ "1": [
+ 14.876800060272217
+ ],
+ "2": [
+ 8.265092372894287
+ ],
+ "3": [
+ 9.207342624664307
+ ],
+ "4": [
+ 8.85547423362732
+ ]
+ }
+}
\ No newline at end of file
diff --git a/tests/scaling/scaling_results/david-Lenovo-IdeaPad-S340-14IWL_2500_systems.json b/tests/scaling/scaling_results/david-Lenovo-IdeaPad-S340-14IWL_2500_systems.json
new file mode 100644
index 0000000000000000000000000000000000000000..3c1be948716bfe135295f9d641f3e84382ab7747
--- /dev/null
+++ b/tests/scaling/scaling_results/david-Lenovo-IdeaPad-S340-14IWL_2500_systems.json
@@ -0,0 +1 @@
+{"amt_systems": 2500, "linear": [535.2446541786194, 531.679586648941, 503.9523551464081, 516.4467158317566, 419.0196635723114], "mp": {"1": [324.1483242511749, 324.7180655002594, 308.04840874671936, 320.5808265209198, 269.06056094169617], "2": [198.5036120414734, 200.80192279815674, 200.7008581161499, 201.11187481880188, 195.4440987110138], "3": [177.40493178367615, 185.3030173778534, 185.9845471382141, 167.43135380744934, 176.51506352424622], "4": [168.93674492835999, 170.39990496635437, 170.85545444488525, 166.5380687713623, 154.52895426750183]}}
\ No newline at end of file
diff --git a/tests/scaling/scaling_results/speedup_scaling_Example.pdf b/tests/scaling/scaling_results/speedup_scaling_Example.pdf
new file mode 100644
index 0000000000000000000000000000000000000000..a7cd4fe2086a19953427c09d82dd38a5bb63aac5
Binary files /dev/null and b/tests/scaling/scaling_results/speedup_scaling_Example.pdf differ
diff --git a/tests/scaling/scaling_results/speedup_scaling_Example.png b/tests/scaling/scaling_results/speedup_scaling_Example.png
new file mode 100644
index 0000000000000000000000000000000000000000..20859bdc4cf27d5fa19c60c82513460cf9e828f1
Binary files /dev/null and b/tests/scaling/scaling_results/speedup_scaling_Example.png differ
diff --git a/tests/population/scaling/scaling_script.py b/tests/scaling/scaling_script.py
similarity index 100%
rename from tests/population/scaling/scaling_script.py
rename to tests/scaling/scaling_script.py