diff --git a/#TODO.org# b/#TODO.org#
new file mode 100644
index 0000000000000000000000000000000000000000..807bc566c9b2ec2468cd53fdfd14828803c6f22c
--- /dev/null
+++ b/#TODO.org#
@@ -0,0 +1,18 @@
+* Todo list for the binary_c-python
+** Logging functionality:
+Idea is to be able to give a string via python that will be used in the through the libbinary_c.so so that log_every_timestep.c
+
+** General:
+*** DONE Get a more reliable way of loading the default values (running a ./tbse echo or something?)
+ CLOSED: [2019-10-29 Tue 17:44]
+*** DONE make routine that reads out all the lines, splits them into pieces and reads out the correct key
+ CLOSED: [2019-10-29 Tue 17:43]
+*** TODO Put header and other source files in a dedicated directory
+*** TODO Use sphinx or read the docs for auto generation of documentation
+*** TODO Have the compiled files put into a build directory
+*** TODO add pythonpath thing to readme
+*** TODO make script that will set up binaryc automatically so that this can become an out of the box thing
+*** TODO Test the importing of this code from different places
+** Population ideas
+*** TODO Queuing system and some multiprocessing to run many systems
+*** TODO Consider rewriting the work that perl does
diff --git a/.#TODO.org b/.#TODO.org
new file mode 120000
index 0000000000000000000000000000000000000000..a749651ea2d28e243028f0cd2d5763dfcd247491
--- /dev/null
+++ b/.#TODO.org
@@ -0,0 +1 @@
+david@david-Lenovo-IdeaPad-S340-14IWL.21326:1572369068
\ No newline at end of file
diff --git a/TODO.org b/TODO.org
index 6542d83bbacdab4cd0efb088c0b1021b70f6ffe9..3294b1e80b6b39663a7cb2650cd54f465254859d 100644
--- a/TODO.org
+++ b/TODO.org
@@ -1,19 +1,19 @@
* Todo list for the binary_c-python
----------------------
-** General:
-** DONE Get a more reliable way of loading the default values (running a ./tbse echo or something?)
- CLOSED: [2019-10-29 Tue 17:44]
-
+** Logging functionality:
+Idea is to be able to give a string via python that will be used in the
-** DONE make routine that reads out all the lines, splits them into pieces and reads out the correct key
- CLOSED: [2019-10-29 Tue 17:43]
-** TODO Put header and other source files in a dedicated directory
-** TODO Use sphinx or read the docs for auto generation of documentation
-** TODO Have the compiled files put into a build directory
-** TODO add pythonpath thing to readme
-** TODO make script that will set up binaryc automatically so that this can become an out of the box thing
-** TODO Test the importing of this code from different places
+** General:
+*** DONE Get a more reliable way of loading the default values (running a ./tbse echo or something?)
+ CLOSED: [2019-10-29 Tue 17:44]
+*** DONE make routine that reads out all the lines, splits them into pieces and reads out the correct key
+ CLOSED: [2019-10-29 Tue 17:43]
+*** TODO Put header and other source files in a dedicated directory
+*** TODO Use sphinx or read the docs for auto generation of documentation
+*** TODO Have the compiled files put into a build directory
+*** TODO add pythonpath thing to readme
+*** TODO make script that will set up binaryc automatically so that this can become an out of the box thing
+*** TODO Test the importing of this code from different places
** Population ideas
*** TODO Queuing system and some multiprocessing to run many systems
*** TODO Consider rewriting the work that perl does
diff --git a/binary_c_python.c b/binary_c_python.c
index 17d85dedd9462ae947a5b8997abeab4a2be8a541..c4103e769fc48c7592eef903ccc3b17c14c771a6 100644
--- a/binary_c_python.c
+++ b/binary_c_python.c
@@ -7,7 +7,7 @@
* Remember: variables must be passed by references
* (i.e. as pointers).
*
- * See apitest.py for an expmple of how to use these functions.
+ * See apitest.py for an example of how to use these functions.
*
* See also
* http://www-h.eng.cam.ac.uk/help/tpl/languages/mixinglanguages.html
@@ -230,4 +230,4 @@ static PyObject* binary_c_return_arglines(PyObject *self, PyObject *args)
free(buffer);
/* Return an object containing the arg list */
return ret;
-}
\ No newline at end of file
+}
diff --git a/make_output.txt b/make_output.txt
index f5c47eae0d6573ddba2b6445bebce381a1baad45..8a6af98afa2a6ea1f48757fdeb7cb3a9a8f50777 100644
--- a/make_output.txt
+++ b/make_output.txt
@@ -1,8 +1,8 @@
-gcc -fPIC `/vol/ph/astro_code/dhendriks/binaryc/binary_c/binary_c-config --flags` -I/vol/ph/astro_code/dhendriks/binaryc/binary_c/src/ -I/vol/ph/astro_code/dhendriks/binaryc/binary_c/src/API -c -o binary_c_python_api.o binary_c_python_api.c
-gcc -DBINARY_C=/vol/ph/astro_code/dhendriks/binaryc/binary_c -fPIC `/vol/ph/astro_code/dhendriks/binaryc/binary_c/binary_c-config --flags` -I/vol/ph/astro_code/dhendriks/binaryc/binary_c/src/ -I/vol/ph/astro_code/dhendriks/binaryc/binary_c/src/API binary_c_python_api.c -c -lbinary_c `/vol/ph/astro_code/dhendriks/binaryc/binary_c/binary_c-config --libs`
-gcc -DBINARY_C=/vol/ph/astro_code/dhendriks/binaryc/binary_c -shared -o libbinary_c_api.so binary_c_python_api.o
+gcc -fPIC `/home/david/projects/binary_c_root/binary_c/binary_c-config --flags` -I/home/david/projects/binary_c_root/binary_c/src/ -I/home/david/projects/binary_c_root/binary_c/src/API -c -o binary_c_python_api.o binary_c_python_api.c
+gcc -DBINARY_C=/home/david/projects/binary_c_root/binary_c -fPIC `/home/david/projects/binary_c_root/binary_c/binary_c-config --flags` -I/home/david/projects/binary_c_root/binary_c/src/ -I/home/david/projects/binary_c_root/binary_c/src/API binary_c_python_api.c -c -lbinary_c `/home/david/projects/binary_c_root/binary_c/binary_c-config --libs`
+gcc -DBINARY_C=/home/david/projects/binary_c_root/binary_c -shared -o libbinary_c_api.so binary_c_python_api.o
python3 setup.py build_ext --inplace
running build_ext
building 'binary_c' extension
-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -DALIGNSIZE=16 -DCPUFREQ=3600 -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D__HAVE_PERF_EVENTS__ -DGIT_REVISION=1:20190808:97d7029f -DGIT_URL=gitlab@gitlab.eps.surrey.ac.uk:ri0005/binary_c.git -DGIT_BRANCH=branch_david -D__HAVE_AVX__ -D__HAVE_DRAND48__ -D__HAVE_GSL__ -DUSE_GSL -D__HAVE_LIBBSD__ -D__HAVE_MALLOC_H__ -D__HAVE_PKG_CONFIG__ -D__HAVE_VALGRIND__ -D__SHOW_STARDATA__ -DBINARY_C_API_H=/vol/ph/astro_code/dhendriks/binaryc/binary_c/src/API/binary_c_API.h -I/vol/ph/astro_code/dhendriks/binaryc/binary_c/src -I/vol/ph/astro_code/dhendriks/binaryc/binary_c/src/API -I/vol/ph/astro_code/dhendriks/binaryc/binary_c -I/usr/include -I/user/HS128/dh00601/gsl/include -I/user/HS128/dh00601/.pyenv/versions/binaryc_py3.6.4/include -I/user/HS128/dh00601/.pyenv/versions/3.6.4/include/python3.6m -c binary_c_python.c -o build/temp.linux-x86_64-3.6/binary_c_python.o
-gcc -pthread -shared -L/user/HS128/dh00601/.pyenv/versions/3.6.4/lib -L/user/HS128/dh00601/.pyenv/versions/3.6.4/lib build/temp.linux-x86_64-3.6/binary_c_python.o -L/vol/ph/astro_code/dhendriks/binaryc/binary_c/src -L./ -L-L/vol/ph/astro_code/dhendriks/binaryc/binary_c -L-L/user/HS128/dh00601/gsl/lib -Wl,--enable-new-dtags,-R/vol/ph/astro_code/dhendriks/binaryc/binary_c/src -Wl,--enable-new-dtags,-R./ -Wl,--enable-new-dtags,-R-L/vol/ph/astro_code/dhendriks/binaryc/binary_c -Wl,--enable-new-dtags,-R-L/user/HS128/dh00601/gsl/lib -lbinary_c -lgsl -lgslcblas -lm -lbsd -lc -lm -ldl -lbinary_c_api -o /vol/ph/astro_code/dhendriks/binaryc/binary_c-python/binary_c.cpython-36m-x86_64-linux-gnu.so
+gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -DALIGNSIZE=16 -DCPUFREQ=3900 -DLINUX -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D__DIFF_STARDATA__ -DGIT_REVISION=4519:20191029:e21f3501 -DGIT_URL=gitlab@gitlab.eps.surrey.ac.uk:ri0005/binary_c.git -DGIT_BRANCH=master -D__HAVE_AVX__ -D__HAVE_DRAND48__ -D__HAVE_GSL__ -DUSE_GSL -D__HAVE_MALLOC_H__ -D__HAVE_PKG_CONFIG__ -D__SHOW_STARDATA__ -DBINARY_C_API_H=/home/david/projects/binary_c_root/binary_c/src/API/binary_c_API.h -I/home/david/projects/binary_c_root/binary_c/src -I/home/david/projects/binary_c_root/binary_c/src/API -I/home/david/projects/binary_c_root/binary_c -I/usr/include -I/home/david/gsl/include -I/home/david/.pyenv/versions/3.6.4/include/python3.6m -c binary_c_python.c -o build/temp.linux-x86_64-3.6/binary_c_python.o
+gcc -pthread -shared -L/home/david/.pyenv/versions/3.6.4/lib -L/home/david/.pyenv/versions/3.6.4/lib build/temp.linux-x86_64-3.6/binary_c_python.o -L/home/david/projects/binary_c_root/binary_c/src -L./ -L-L/home/david/projects/binary_c_root/binary_c -L-L/home/david/gsl/lib -Wl,--enable-new-dtags,-R/home/david/projects/binary_c_root/binary_c/src -Wl,--enable-new-dtags,-R./ -Wl,--enable-new-dtags,-R-L/home/david/projects/binary_c_root/binary_c -Wl,--enable-new-dtags,-R-L/home/david/gsl/lib -lbinary_c -lgsl -lgslcblas -lm -lc -lm -ldl -lbinary_c_api -o /home/david/projects/binary_c_root/binary_c-python/binary_c.cpython-36m-x86_64-linux-gnu.so