From 3245f073f8a3b88cd3eaa77c81df68ea757728d9 Mon Sep 17 00:00:00 2001
From: Valeria Jaramillo <m17462@login1.ice1-mgmt.eureka2.surrey.ac.uk>
Date: Fri, 2 Aug 2024 10:07:04 +0100
Subject: [PATCH] updated Figure numbering in script names
---
...and13-18_Power_ON_OFF_allsub_topo_boxplots.m} | 0
...Figure11and19_Frequency_ON_OFF_allsub_topo.m} | 0
..._Suppl_Figure3_2_ERPs_phase_reset_nm_alpha.m} | 0
..._Suppl_Figure3_2_ERPs_phase_reset_nm_theta.m} | 0
...F_Power_ON_OFF_change_psd_phasictonic_alpha.m | 0
...F_Power_ON_OFF_change_psd_phasictonic_theta.m | 0
...tivity.m => Suppl_Figure12_20_connectivity.m} | 0
README.md | 16 +++++++++++-----
8 files changed, 11 insertions(+), 5 deletions(-)
rename Figures/{Figure4A_4G_Suppl_Figure5-9and12-17_Power_ON_OFF_allsub_topo_boxplots.m => Figure4A_4G_Suppl_Figure5-9and13-18_Power_ON_OFF_allsub_topo_boxplots.m} (100%)
rename Figures/{Figure4D_4J_Suppl_Figure10and18_Frequency_ON_OFF_allsub_topo.m => Figure4D_4J_Suppl_Figure11and19_Frequency_ON_OFF_allsub_topo.m} (100%)
rename Figures/{Suppl_Figure3_2_ERPs_phase_reset_nm_alpha.m => Rev_Suppl_Figure3_2_ERPs_phase_reset_nm_alpha.m} (100%)
rename Figures/{Suppl_Figure3_2_ERPs_phase_reset_nm_theta.m => Rev_Suppl_Figure3_2_ERPs_phase_reset_nm_theta.m} (100%)
rename analyses/psd/E_TF_Power_ON_OFF_change_psd_phasictonic_alpha.m => Figures/Suppl_Figure10_TF_Power_ON_OFF_change_psd_phasictonic_alpha.m (100%)
rename analyses/psd/E_TF_Power_ON_OFF_change_psd_phasictonic_theta.m => Figures/Suppl_Figure10_TF_Power_ON_OFF_change_psd_phasictonic_theta.m (100%)
rename Figures/{Suppl_Figure11_19_connectivity.m => Suppl_Figure12_20_connectivity.m} (100%)
diff --git a/Figures/Figure4A_4G_Suppl_Figure5-9and12-17_Power_ON_OFF_allsub_topo_boxplots.m b/Figures/Figure4A_4G_Suppl_Figure5-9and13-18_Power_ON_OFF_allsub_topo_boxplots.m
similarity index 100%
rename from Figures/Figure4A_4G_Suppl_Figure5-9and12-17_Power_ON_OFF_allsub_topo_boxplots.m
rename to Figures/Figure4A_4G_Suppl_Figure5-9and13-18_Power_ON_OFF_allsub_topo_boxplots.m
diff --git a/Figures/Figure4D_4J_Suppl_Figure10and18_Frequency_ON_OFF_allsub_topo.m b/Figures/Figure4D_4J_Suppl_Figure11and19_Frequency_ON_OFF_allsub_topo.m
similarity index 100%
rename from Figures/Figure4D_4J_Suppl_Figure10and18_Frequency_ON_OFF_allsub_topo.m
rename to Figures/Figure4D_4J_Suppl_Figure11and19_Frequency_ON_OFF_allsub_topo.m
diff --git a/Figures/Suppl_Figure3_2_ERPs_phase_reset_nm_alpha.m b/Figures/Rev_Suppl_Figure3_2_ERPs_phase_reset_nm_alpha.m
similarity index 100%
rename from Figures/Suppl_Figure3_2_ERPs_phase_reset_nm_alpha.m
rename to Figures/Rev_Suppl_Figure3_2_ERPs_phase_reset_nm_alpha.m
diff --git a/Figures/Suppl_Figure3_2_ERPs_phase_reset_nm_theta.m b/Figures/Rev_Suppl_Figure3_2_ERPs_phase_reset_nm_theta.m
similarity index 100%
rename from Figures/Suppl_Figure3_2_ERPs_phase_reset_nm_theta.m
rename to Figures/Rev_Suppl_Figure3_2_ERPs_phase_reset_nm_theta.m
diff --git a/analyses/psd/E_TF_Power_ON_OFF_change_psd_phasictonic_alpha.m b/Figures/Suppl_Figure10_TF_Power_ON_OFF_change_psd_phasictonic_alpha.m
similarity index 100%
rename from analyses/psd/E_TF_Power_ON_OFF_change_psd_phasictonic_alpha.m
rename to Figures/Suppl_Figure10_TF_Power_ON_OFF_change_psd_phasictonic_alpha.m
diff --git a/analyses/psd/E_TF_Power_ON_OFF_change_psd_phasictonic_theta.m b/Figures/Suppl_Figure10_TF_Power_ON_OFF_change_psd_phasictonic_theta.m
similarity index 100%
rename from analyses/psd/E_TF_Power_ON_OFF_change_psd_phasictonic_theta.m
rename to Figures/Suppl_Figure10_TF_Power_ON_OFF_change_psd_phasictonic_theta.m
diff --git a/Figures/Suppl_Figure11_19_connectivity.m b/Figures/Suppl_Figure12_20_connectivity.m
similarity index 100%
rename from Figures/Suppl_Figure11_19_connectivity.m
rename to Figures/Suppl_Figure12_20_connectivity.m
diff --git a/README.md b/README.md
index 8b7a557..79a57e3 100644
--- a/README.md
+++ b/README.md
@@ -149,13 +149,19 @@ make figures, run after analyses
**Figure3C_3H_eBOSC_frequency_corr_nwaves**: plot correlation scatter plot between individual oscillation peak frequency and peak stimulation frequency
**Figure3D_3I_polarhistogram**: plot polar histogram of mean phase and resultant across participants
**Figure3E_3J_resultant_topo**: plot resultant for each electrode across scalp, test non-uniformity across circle
-**Figure4A_4G_Suppl_Figure5-9and12-17_Power_ON_OFF_allsub_topo_boxplots**: plot topography of power change lme F-values and significant electrode clusters
+**Figure4A_4G_Suppl_Figure5-9and13-18_Power_ON_OFF_allsub_topo_boxplots**: plot topography of power change lme F-values and significant electrode clusters
**Figure4B_4C_Power_ON_OFF_change_psd_phasictonic_alpha**: plot power changes across spectrum for alpha CLAS
-**Figure4D_4J_Suppl_Figure10and18_Frequency_ON_OFF_allsub_topo**: plot topography of frequency change lme F-values and significant electrode clusters
+**Figure4D_4J_Suppl_Figure11and19_Frequency_ON_OFF_allsub_topo**: plot topography of frequency change lme F-values and significant electrode clusters
**Figure4E-F_4K-L_Frequency_ON_OFF_change_boxplots_time**: make boxplots for frequency change and plot frequency change over time across different conditions
-**Figure4H_4I_Power_ON_OFF_change_psd_phasictonic_theta**: plot power changes across spectrum for theta CLAS
-**Suppl_Figure3_ISI_autocorr**: plot autocorrelation across ISI's
-**Suppl_Figure11_19_connectivity**: plot topography of connectivity change lme F-values and significant electrode clusters, plot significant connections and boxplots for different conditions
+**Figure4H_4I_Power_ON_OFF_change_psd_phasictonic_theta**: plot power changes across spectrum for theta CLAS
+**Rev_Suppl_Figure3_2_ERPs_phase_reset_nm_alpha**: for reviewer (not included in manuscript), plot ERP across all stimuli of alpha CLAS
+**Rev_Suppl_Figure3_2_ERPs_phase_reset_nm_theta**: for reviewer (not included in manuscript), plot ERP across all stimuli of theta CLAS
+**Suppl_Figure3_ISI_autocorr**: plot autocorrelation across ISI's
+**Suppl_Figure10_TF_Power_ON_OFF_change_psd_phasictonic_alpha**: Time-frequency plot of power changes across OFF-ON-OFF windows for alpha CLAS
+**Suppl_Figure10_TF_Power_ON_OFF_change_psd_phasictonic_theta**: Time-frequency plot of power changes across OFF-ON-OFF windows for theta CLAS
+**Suppl_Figure12_20_connectivity**: plot topography of connectivity change lme F-values and significant electrode clusters, plot significant connections and boxplots for different conditions
+**Suppl_Figure21_ERPs_phase_reset_alpha**: plots for phase-reset analysis (alpha-filtered), plot ERPs and phases from AEP block for stimuli delivered at orthogonal phases, calculate phase-reset and evaluate amplitude-dependency
+**Suppl_Figure22_ERPs_phase_reset_theta**: plots for phase-reset analysis (theta-filtered), plot ERPs and phases from AEP block for stimuli delivered at orthogonal phases, calculate phase-reset and evaluate amplitude-dependency
**Suppl_Table1_questionnaires**: make table for KSS and VAMS changes from evening to morning
--
GitLab