home.md

@@ -5,13 +5,13 @@ This wiki provides instructions on general and EUREKA-specific Gromacs methods
 ## Contents
 
 *  Pre-Simulation
-   -   [Generating Topologies for an Arbitrary PDB](Input-Preparation/Generating-Topologies-for-an-Arbitrary-PDB)
+   -   [Generating Topologies for an Arbitrary PDB](Pre-Simulation/Generating-Topologies-for-an-Arbitrary-PDB)
        -   Finding structures
        -   Selecting a Force Field
        -   Selecting Termini
        -   Fixing errors
            -   Atom **AAA** in residue **BBC** was not found in rtp entry **DD** with **E** atoms
-   -   [Creating Custom Force Fields and Residue Entries](Input-Preparation/Creating-custom-force-fields-and-residue-entries)
+   -   [Creating Custom Force Fields and Residue Entries](Pre-Simulation/Creating-custom-force-fields-and-residue-entries)
        -   Creating a Copy of a Force Field
        -   Understanding Residue Entries
    -   b) Unit Cells and Solvation