Explore projects

Seurat5 base + SingleCellExperiment

a smaller and cleaner version for container-registry.surrey.ac.uk/shared-containers/bioinformatics-miniconda-r441-seurat5, but it uses R 4.3.3

This contains all the code for COM3014 group coursework

Contains dependencies for https://github.com/YuliangXiu/ECON/blob/master/docs/installation-ubuntu.md

a smaller and cleaner version for container-registry.surrey.ac.uk/shared-containers/bioinformatics-miniconda-r441-seurat5

A container for building the YingMa0107/CARD tool in R for "Spatially Informed Cell Type Deconvolution for Spatial Transcriptomics".

use podman run -it container-registry.surrey.ac.uk/shared-containers/bioinformatics-yma-card

https://www.bioconductor.org/packages/release/bioc/html/Banksy.html This container is specifically for Banksy, Spatial transcriptomic clustering.

this image comes with BITFAM and RStan

Please refer to the tutorial Transcription factor regulatory activity in single cell transcriptomics on YouTube. ]

Dachi-AdvWeb

All dependencies to run samplernn-pytorch (libexpat) https://github.com/deepsound-project/samplernn-pytorch